PRGDB00050488 (NBS-LRR-like resistance protein)

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NBS-LRR-like resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 117935868 (EF059975)
Gene Class N
Domain Type NBS
Gene Species Saccharum officinarum

Comment?

Saccharum officinarum clone RGA3-NCO376 NBS-LRR-like resistance protein gene, partial cds.

DNA Sequence

GGGGGGATGGGGAAAACGCTTTCCCTCAAAAAATTATAATCACCAAAAAATAAAAGGAACATTTGACAAGCAAGCATGGATTTGTGTTTCTAAAGACTATTCTGAAGATGGTCTTTTGAAAGAAGTTCTTCGAAACATTGGGGTAGACTATAAGCATGATGAAACAGCTGGAGAACTTAGCAGGAAGCTTGCAACAGCAGTTGAAAGCAGAAGTATTTTTCTTGTGTTAGATGACATTTGGAAGCAAGAGGGATGGACTAGTCTACTAAGAACTCCATTAAATACTTCATCTAGAACAATAATTCTTGTGACTACTCGTAATGATACAGTGGCAAGAGCAATTGGCGTGCAAGATGTTCATCGAGTTGAATTGATGTCAGATGACACAGGATGGGAGCTGTTGTGGAGAAGTATGAACGTTAATGAAGAGACTGAAGTGGCAAATCTAAGGGGTATGGGGAATGAGATTGTCCGTATGTGTGGTGGCCTCCCCCTCGCCTTC


Protein sequences

Name Description Sequence
NBS-LRR-like resistance protein NBS-LRR-like resistance protein [Saccharum officinarum].

GGWGKRFPSKNYNHQKIKGTFDKQAWICVSKDYSEDGLLKEVLRNIGVDYKHDETAGELSRKLATAVESRSIFLVLDDIWKQEGWTSLLRTPLNTSSRTIILVTTRNDTVARAIGVQDVHRVELMSDDTGWELLWRSMNVNEETEVANLRGMGNEIVRMCGGLPLAF


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-166 NB-ARC,NBS
NB-ARC

GGWGKRFPSKNYNHQKIKGTFDKQAWICVSKDYSEDGLLKEVLRNIGVDYKHDETAGELSRKLATAVESRSIFLVLDDIWKQEGWTSLLRTPLNTSSRTIILVTTRNDTVARAIGVQDVHRVELMSDDTGWELLWRSMNVNEETEVANLRGMGNEIVRMCGGLPLA

superfamily: SSF52540
12-167 SSF52540

YNHQKIKGTFDKQAWICVSKDYSEDGLLKEVLRNIGVDYKHDETAGELSRKLATAVESRSIFLVLDDIWKQEGWTSLLRTPLNTSSRTIILVTTRNDTVARAIGVQDVHRVELMSDDTGWELLWRSMNVNEETEVANLRGMGNEIVRMCGGLPLAF






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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