PRGDB00050506 (T6H20.290)
| T6H20.290 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 5578750 (AL096859) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGTAGATGCGATCACAGAGTTTGTTGTGGGAAAGATCGACAACTATCTCATCGAAGAAGCGCCAATGTTGATAGGAGTCAAAGACGATCTAGAGGAGCTGAAGACAGAGTTGACGTGCATCCAAGTTTATCTCAAAAATGTTGAAGTTTGTGACAAAGAAGATGAGGTCTCAAAAGAGTGGACAAAACTGGTTTTAGACATTGCTTATGACGTCGAAGATGTTTTGGACACCTATTTTCTGAAACTAGAAAAAAGACTACACAGACTAGGCTTGATGAGATTGACCAACATAATAAGCGATAAGAAGGATGCGTACAACATACTTGATGATATCAAAACCCTCAAAAGAAGAACTTTGGATGTTACTCGCAAACTTGAGATGTATGGGATAGGAAACTTTAATGAGCATCGAGTAGTAGCGAGTACTTCAAGGGTGAGGGAAGTTCGGCGTGCTCGATCTGATGATCAGGAAGAGCGTGTAGTTGGTTTGACAGATGATGCTAAGGTTCTTTTGACAAAGCTTCTTGATGATGATGGGGATAACAAGATATATATGATCTCCATATTCGGCATGGAAGGTCTCGGGAAGACTTCTCTTGCAAGAAAGCTTTTTAACTCTAGCGATGTGAAGGAAAGCTTTGAATATCGAGTATGGACTAATGTTTCTGGAGAATGTAATACAAGAGATATACTTATGAGAATCATAAGCTCTTTGGAAGAAACATCTGAGGGAGAGCTTGAAAAGATGGCTCAGCAGGAGTTAGAAGTTTACCTTCATGATATTCTACAAGAGAAAAGATATCTTGTGGTGGTAGATGATATATGGGAGAGTGAAGCATTGGAGAGCTTGAAGCGAGCGTTACCTTGCAGCTATCAAGGAAGTAGAGTCATCATCACTACAAGTATTAGAGTCGTGGCTGAAGGCAGGGACAAGAGAGTCTACACCCATAACATAAGGTTCTTAACGTTTAAAGAAAGCTGGAACTTGTTTGAGAAGAAAGCATTTAGATATATCTTAAAGGTCGATCAAGAACTGCAGAAAATCGGAAAAGAAATGGTTCAAAAATGTGGTGGATTACCGCGTACTACAGTGGTTCTTGCCGGGCTTATGTCCAGGAAGAAGCCAAACGAGTGGAACGATGTGTGGTCCAGTTTGCGTGTAAAGGATGACAACATTCATGTCTCCAGTTTGTTTGACCTAAGCTTCAAGGATATGGGACATGAGTTAAAGCTCTGCTTTCTTTACCTTAGCGTCTTCCCCGAGGACTATGAGGTCGACGTAGAGAAATTGATACAGTTACTTGTAGCAGAAGGGTTTATACAAGAGGATGAAGAGATGACGATGGAAGATGTGGCTAGATATTATATTGAAGATCTGGTGTACATAAGCTTAGTGGAAGTCGTGAAAAGAAAGAAAGGGAAACTGATGTCTTTTAGAATCCATGATCTTGTAAGAGAATTTACTATCAAGAAATCCAAAGAGCTCAACTTTGTAAATGTTTACGACGAGCAGCATTCTTCTACTACTAGCAGAAGGGAAGTGGTTCACCATCTTATGGACGACAACTACTTGTGCGACAGACGTGTGAACACACAAATGCGATCTTTCTTGTTCTTCGGTAAACGGAGGAACGACATTACATATGTTGAAACCATTACTTTGAAACTGAAGTTACTTCGAGTGCTTAATCTTGGAGGACTTCATTTTATTTGTCAAGGATATAGCCCTTGGAGTTTACCAGATGTGATCGGAGGTTTAGTCCACTTGAGGTACCTTGGGATCGCCGATACCGTTGTGAACAACTTACCAGATTTCATCTCCAACTTACGGTTTCTACAGACACTAGATGCATCAGGCAACTCCTTCGAGCGAATGACTGATCTAAGTAACCTCACATCACTAAGGCATCTCACTGGAAGATTCATCGGAGAATTGCTTATAGGCGACGCAGTGAATCTTCAGACCTTGAGGTCTATCTCCTCCTATAGCTGGAGCAAACTAAAACATGAGTTACTCATAAATCTTCGGGACTTGGAGATCTACGAGTTCCACATATTGAACGACCAAATAAAAGTTCCTTTGGACTTAGTTTCCTTATCGAAACTCAAAAATCTTCGTGTCTTGAAGATTGAAGTAGTGTCCTTCAGCTTATTTTCCGAAGAAACAGTTCGTTTCGAACTCCTTGTCAAGCTAACACTGCATTGCGACGTAAGAAGACTTCCCAGAGACATGGATTTGATCTTTCCCAGTCTTGAGTCCCTGACACTTGTAACAAATCTCCAAGAAGACCCAATGCCTACTCTGCAAAAACTACAACGTTTAGAAAATCTAGTCTTGTATTCTTGTGTCTACCCGGGAGCGAAAATGTTCATCAACGCACAAGGTTTTGGTCGGCTGAGGAAACTTAAAGTGATCATAAAAAGATTAGATGAGTTGGAGATTGAAGAAGAAGCCATGCCATGTTTGATGAAGCTAAATCTTGACAATAAAGATGGAGCTACAAAGCTAATGATTCCCGATCGAATGCGAGCGTTTGTTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| putative protein | putative protein [Arabidopsis thaliana]. | MVDAITEFVVGKIDNYLIEEAPMLIGVKDDLEELKTELTCIQVYLKNVEVCDKEDEVSKEWTKLVLDIAYDVEDVLDTYFLKLEKRLHRLGLMRLTNIISDKKDAYNILDDIKTLKRRTLDVTRKLEMYGIGNFNEHRVVASTSRVREVRRARSDDQEERVVGLTDDAKVLLTKLLDDDGDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSLEETSEGELEKMAQQELEVYLHDILQEKRYLVVVDDIWESEALESLKRALPCSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFLTFKESWNLFEKKAFRYILKVDQELQKIGKEMVQKCGGLPRTTVVLAGLMSRKKPNEWNDVWSSLRVKDDNIHVSSLFDLSFKDMGHELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVVKRKKGKLMSFRIHDLVREFTIKKSKELNFVNVYDEQHSSTTSRREVVHHLMDDNYLCDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRVLNLGGLHFICQGYSPWSLPDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASGNSFERMTDLSNLTSLRHLTGRFIGELLIGDAVNLQTLRSISSYSWSKLKHELLINLRDLEIYEFHILNDQIKVPLDLVSLSKLKNLRVLKIEVVSFSLFSEETVRFELLVKLTLHCDVRRLPRDMDLIFPSLESLTLVTNLQEDPMPTLQKLQRLENLVLYSCVYPGAKMFINAQGFGRLRKLKVIIKRLDELEIEEEAMPCLMKLNLDNKDGATKLMIPDRMRAFV |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR11017:SF14 | 12-847 | PTHR11017:SF14 | KIDNYLIEEAPMLIGVKDDLEELKTELTCIQVYLKNVEVCDKEDEVSKEWTKLVLDIAYDVEDVLDTYFLKLEKRLHRLGLMRLTNIISDKKDAYNILDDIKTLKRRTLDVTRKLEMYGIGNFNEHRVVASTSRVREVRRARSDDQEERVVGLTDDAKVLLTKLLDDDGDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSLEETSEGELEKMAQQELEVYLHDILQEKRYLVVVDDIWESEALESLKRALPCSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFLTFKESWNLFEKKAFRYILKVDQELQKIGKEMVQKCGGLPRTTVVLAGLMSRKKPNEWNDVWSSLRVKDDNIHVSSLFDLSFKDMGHELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVVKRKKGKLMSFRIHDLVREFTIKKSKELNFVNVYDEQHSSTTSRREVVHHLMDDNYLCDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRVLNLGGLHFICQGYSPWSLPDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASGNSFERMTDLSNLTSLRHLTGRFIGELLIGDAVNLQTLRSISSYSWSKLKHELLINLRDLEIYEFHILNDQIKVPLDLVSLSKLKNLRVLKIEVVSFSLFSEETVRFELLVKLTLHCDVRRLPRDMDLIFPSLESLTLVTNLQEDPMPTLQKLQRLENLVLYSCVYPGAKMFINAQGFGRLRKLKVIIKRLDELEIEEEAMPCLMKLNLDNKDGATKLMIPDRMRAFV |
| HMMPanther: PTHR11017 | 12-847 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | KIDNYLIEEAPMLIGVKDDLEELKTELTCIQVYLKNVEVCDKEDEVSKEWTKLVLDIAYDVEDVLDTYFLKLEKRLHRLGLMRLTNIISDKKDAYNILDDIKTLKRRTLDVTRKLEMYGIGNFNEHRVVASTSRVREVRRARSDDQEERVVGLTDDAKVLLTKLLDDDGDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSLEETSEGELEKMAQQELEVYLHDILQEKRYLVVVDDIWESEALESLKRALPCSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFLTFKESWNLFEKKAFRYILKVDQELQKIGKEMVQKCGGLPRTTVVLAGLMSRKKPNEWNDVWSSLRVKDDNIHVSSLFDLSFKDMGHELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVVKRKKGKLMSFRIHDLVREFTIKKSKELNFVNVYDEQHSSTTSRREVVHHLMDDNYLCDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRVLNLGGLHFICQGYSPWSLPDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASGNSFERMTDLSNLTSLRHLTGRFIGELLIGDAVNLQTLRSISSYSWSKLKHELLINLRDLEIYEFHILNDQIKVPLDLVSLSKLKNLRVLKIEVVSFSLFSEETVRFELLVKLTLHCDVRRLPRDMDLIFPSLESLTLVTNLQEDPMPTLQKLQRLENLVLYSCVYPGAKMFINAQGFGRLRKLKVIIKRLDELEIEEEAMPCLMKLNLDNKDGATKLMIPDRMRAFV |
| superfamily: SSF52540 | 144-386 | SSF52540 | SRVREVRRARSDDQEERVVGLTDDAKVLLTKLLDDDGDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSLEETSEGELEKMAQQELEVYLHDILQEKRYLVVVDDIWESEALESLKRALPCSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFLTFKESWNLFEKKAFRYILKVDQELQKIGKEMVQKCGGLPRTTVVLAGLMSRKKPNEWNDVWSSL |
| HMMPfam: PF00931 IPR002182
|
170-444 | NB-ARC,NBS NB-ARC
|
VLLTKLLDDDGDNKIYMISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSLEETSEGELEKMAQQELEVYLHDILQEKRYLVVVDDIWESEALESLKRALPCSYQGSRVIITTSIRVVAEGRDKRVYTHNIRFLTFKESWNLFEKKAFRYILKVDQELQKIGKEMVQKCGGLPRTTVVLAGLMSRKKPNEWNDVWSSLRVKDDNIHVSSLFDLSFKDMGHELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQED |
| FPrintScan: PR00364 IPR000767
|
186-201 | DISEASERSIST Disease resistance protein
|
MISIFGMEGLGKTSLA |
| Gene3D: G3DSA:3.40.50.300 | 186-305 | G3DSA:3.40.50.300 | MISIFGMEGLGKTSLARKLFNSSDVKESFEYRVWTNVSGECNTRDILMRIISSLEETSEGELEKMAQQELEVYLHDILQEKRYLVVVDDIWESEALESLKRALPCSYQGSRVIITTSIRV |
| FPrintScan: PR00364 IPR000767
|
262-276 | DISEASERSIST Disease resistance protein
|
ILQEKRYLVVVDDIW |
| FPrintScan: PR00364 IPR000767
|
357-371 | DISEASERSIST Disease resistance protein
|
CGGLPRTTVVLAGLM |
| superfamily: SSF52058 | 480-830 | SSF52058,LRR | RIHDLVREFTIKKSKELNFVNVYDEQHSSTTSRREVVHHLMDDNYLCDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRVLNLGGLHFICQGYSPWSLPDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASGNSFERMTDLSNLTSLRHLTGRFIGELLIGDAVNLQTLRSISSYSWSKLKHELLINLRDLEIYEFHILNDQIKVPLDLVSLSKLKNLRVLKIEVVSFSLFSEETVRFELLVKLTLHCDVRRLPRDMDLIFPSLESLTLVTNLQEDPMPTLQKLQRLENLVLYSCVYPGAKMFINAQGFGRLRKLKVIIKRLDELEIEEEAMPCLMKLNLDN |
| Gene3D: G3DSA:3.80.10.10 | 544-831 | G3DSA:3.80.10.10 | RNDITYVETITLKLKLLRVLNLGGLHFICQGYSPWSLPDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASGNSFERMTDLSNLTSLRHLTGRFIGELLIGDAVNLQTLRSISSYSWSKLKHELLINLRDLEIYEFHILNDQIKVPLDLVSLSKLKNLRVLKIEVVSFSLFSEETVRFELLVKLTLHCDVRRLPRDMDLIFPSLESLTLVTNLQEDPMPTLQKLQRLENLVLYSCVYPGAKMFINAQGFGRLRKLKVIIKRLDELEIEEEAMPCLMKLNLDNK |
| FPrintScan: PR00364 IPR000767
|
608-624 | DISEASERSIST Disease resistance protein
|
SNLRFLQTLDASGNSFE |
| ProfileScan: PS51450 IPR001611
|
612-633 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
FLQTLDASGNSFERMTDLSNLT |
| ProfileScan: PS51450 IPR001611
|
751-773 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLESLTLVTNLQEDPMPTLQKLQ |
List of Contributions
There has not been any contribution yet.
