PRGDB00050603 (9E)

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9E
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 50512299 (AY569331)
Gene Class Unknown
Domain Type
Gene Species Solanum pimpinellifolium

Comment?

Lycopersicon pimpinellifolium 9DC resistance gene cluster.

DNA Sequence

GATCCAAATGCACCATATGGATTGAGACTAACAATAGAAGATTACCCTTTTGCTAGTGATGGTTTAGTACTTTGGGACATACTTAAACAATGGGTAACAAATTATGTCAACCATTATTATCCACAAGCAAATCTCATTGAATGTGATGAAGAACTACAAGCTTGGTGGTCAGAGATTAAAAATGTTGGACATGGTGACAAGAAAGATGAGCCATGGTGGCCAGAGTTAAATACCCCAAATGACTTAATTGGTATTGTCACAACAATAATTTGGGTAACTTCTGGCCATCATGCAGCTGTAAACTTTGGCCAATACAGCTATGCAGGCTATTTTCCAAATAGGCCAACAATTGCTAGGTCAAAAATGCCAACTGAAGATCCAACAGATGAAGAATGGGAAGACTTTTTGAACAAACCTGAGGAGGCATTGTTAAAATGCTTCCCTTCACAACTTCAAGCAACAAAAGTAATAGCAGTTTTGGATGTTTTATCAAACCATTCTCCAGATGAAGAATATATTGGTACAAATATTGAACCTTTTTGGAAAGATGAACCCGTAATCAACGCGGCGTTCGAGGTATTTTCGGGGAAATTGAAGGAGCTTGAAGGGATAATTGATGCTAGAAATGCTGATTGTAATTTGAAGAATAGAAATGGAGCTGGAGTTATGCCTTATGAATTATTGAAACCATTTTCTGAACCTGGAATTACTGGAAAAGGTGTACCTTATAGCATTTCCATTTGA


Protein sequences

Name Description Sequence
LoxC-like LoxC-like [Lycopersicon pimpinellifolium].

DPNAPYGLRLTIEDYPFASDGLVLWDILKQWVTNYVNHYYPQANLIECDEELQAWWSEIKNVGHGDKKDEPWWPELNTPNDLIGIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSEPGITGKGVPYSISI

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:1.20.245.10
1-247 G3DSA:1.20.245.10

DPNAPYGLRLTIEDYPFASDGLVLWDILKQWVTNYVNHYYPQANLIECDEELQAWWSEIKNVGHGDKKDEPWWPELNTPNDLIGIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSEPGITGKGVPYSISI

HMMPfam: PF00305
IPR013819
1-230 Lipoxygenase
Lipoxygenase, C-terminal

DPNAPYGLRLTIEDYPFASDGLVLWDILKQWVTNYVNHYYPQANLIECDEELQAWWSEIKNVGHGDKKDEPWWPELNTPNDLIGIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKP

superfamily: SSF48484
IPR013819
1-247 Lipoxygenase
Lipoxygenase, C-terminal

DPNAPYGLRLTIEDYPFASDGLVLWDILKQWVTNYVNHYYPQANLIECDEELQAWWSEIKNVGHGDKKDEPWWPELNTPNDLIGIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSEPGITGKGVPYSISI

ProfileScan: PS51393
IPR013819
1-247 LIPOXYGENASE_3
Lipoxygenase, C-terminal

DPNAPYGLRLTIEDYPFASDGLVLWDILKQWVTNYVNHYYPQANLIECDEELQAWWSEIKNVGHGDKKDEPWWPELNTPNDLIGIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSEPGITGKGVPYSISI

HMMPanther: PTHR11771:SF2
11-247 PTHR11771:SF2,LIPOXYGENASE

TIEDYPFASDGLVLWDILKQWVTNYVNHYYPQANLIECDEELQAWWSEIKNVGHGDKKDEPWWPELNTPNDLIGIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSEPGITGKGVPYSISI

HMMPanther: PTHR11771
IPR000907
11-247 LipOase
Lipoxygenase

TIEDYPFASDGLVLWDILKQWVTNYVNHYYPQANLIECDEELQAWWSEIKNVGHGDKKDEPWWPELNTPNDLIGIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSEPGITGKGVPYSISI


List of References

Marco Kruijt, Bas F Brandwagt, Pierre J G M de Wit
Rearrangements in the Cf-9 disease resistance gene cluster of wild tomato have resulted in three genes that mediate Avr9 responsiveness.
Genetics: 2004, 168(3);1655-63
PubMed:15579714 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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