PRGDB00050617 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 71363559 (DQ104375)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Populus tremula

Comment?

Populus tremula clone P1-RGA10 disease resistance-like protein gene, partial cds.

DNA Sequence

ATGCCAGGAGTAGGGAAGACGACTATAGCACAAGTTGTATTTAATCAACTCTGCTATGGATTCGAGGGAAGCTGTTTTCTTTCGGATATCAATGAAAGGTCAAAACAAGTTAATGGTCTGGCTCTTTTACAAAAGCAACTTCTTCACGATATTTTAAAACAAGATGCTGCAAACTTCGATTGTGTTGATAGAGGAAAGGTTCTAATCAAAGAGCGACTTTGTCGCAAAAGAGTTCTTGTTGTTGCTGATGATGTTGCTCATCAGGACCAGCTAAAAGCTCTGATGGGAGATCGAAGTTGGTTTGGTCCCGGAAGTAGAGTAATTATCACAACAAGAGATTCAAATCTTCTTCGTGAAGCAGATCAAACATATCAGATCAAAGAACTGGAACCAGATGAGGCCCTTCAGCTTTTCAGATGGCATGCCTTTAAGGACACCAAGCCAACAGAAGATTATATTGATCTTTCGAAGGATGTAGTTGATTACTGTGGGGGGCTGCCTCTTGCTCTTGAG


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Populus tremula].

MPGVGKTTIAQVVFNQLCYGFEGSCFLSDINERSKQVNGLALLQKQLLHDILKQDAANFDCVDRGKVLIKERLCRKRVLVVADDVAHQDQLKALMGDRSWFGPGSRVIITTRDSNLLREADQTYQIKELEPDEALQLFRWHAFKDTKPTEDYIDLSKDVVDYCGGLPLALE

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-170 SSF52540

MPGVGKTTIAQVVFNQLCYGFEGSCFLSDINERSKQVNGLALLQKQLLHDILKQDAANFDCVDRGKVLIKERLCRKRVLVVADDVAHQDQLKALMGDRSWFGPGSRVIITTRDSNLLREADQTYQIKELEPDEALQLFRWHAFKDTKPTEDYIDLSKDVVDYCGGLPLAL

HMMPanther: PTHR11017:SF20
1-170 PTHR11017:SF20,SUBFAMILY NOT NAMED

MPGVGKTTIAQVVFNQLCYGFEGSCFLSDINERSKQVNGLALLQKQLLHDILKQDAANFDCVDRGKVLIKERLCRKRVLVVADDVAHQDQLKALMGDRSWFGPGSRVIITTRDSNLLREADQTYQIKELEPDEALQLFRWHAFKDTKPTEDYIDLSKDVVDYCGGLPLAL

HMMPfam: PF00931
IPR002182
1-170 NB-ARC,NBS
NB-ARC

MPGVGKTTIAQVVFNQLCYGFEGSCFLSDINERSKQVNGLALLQKQLLHDILKQDAANFDCVDRGKVLIKERLCRKRVLVVADDVAHQDQLKALMGDRSWFGPGSRVIITTRDSNLLREADQTYQIKELEPDEALQLFRWHAFKDTKPTEDYIDLSKDVVDYCGGLPLAL

HMMPanther: PTHR11017
1-170 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MPGVGKTTIAQVVFNQLCYGFEGSCFLSDINERSKQVNGLALLQKQLLHDILKQDAANFDCVDRGKVLIKERLCRKRVLVVADDVAHQDQLKALMGDRSWFGPGSRVIITTRDSNLLREADQTYQIKELEPDEALQLFRWHAFKDTKPTEDYIDLSKDVVDYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
2-128 G3DSA:3.40.50.300

PGVGKTTIAQVVFNQLCYGFEGSCFLSDINERSKQVNGLALLQKQLLHDILKQDAANFDCVDRGKVLIKERLCRKRVLVVADDVAHQDQLKALMGDRSWFGPGSRVIITTRDSNLLREADQTYQIKE

FPrintScan: PR00364
IPR000767
72-86 DISEASERSIST
Disease resistance protein

RLCRKRVLVVADDVA

FPrintScan: PR00364
IPR000767
163-171 DISEASERSIST
Disease resistance protein

CGGLPLALE






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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