PRGDB00050620 (disease resistance-like protein)

From PRG Wiki
Jump to: navigation, search
disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 71363552 (DQ104371)
Gene Class TNL
Domain Type NBS, LRR, TIR, Others
Gene Species Populus tremula

Comment?

Populus tremula clone P1-RGA6 disease resistance-like protein gene, partial cds.

DNA Sequence

ATGCCAGGAATGGGTAAGACAACTATAGCACAAGTTGTATTTAATCAACTCTGCCATGGATTCGAGGGAAGCTGTTTTCTTTCGGATATCAATGAAAGGTCAAAACAAGTTAATGGTCTTGTTCCTTTTCAAATGCAACTTCTTCGTGATATTTTAAAACAAGATGTTGCAAACTTCGATTGTGTTGATAGAGGAAAGGTTCTGATCAAAGAGCGACTTCGTAGCAAAAGAGTTCTTGTTGTTGCTGATGATGTGGCTCATCCGGACCAGCTAAATGCATTGATGGGAGATCGAAGTTGGTTTGGTCCCAGAAGTAGACTAATTATTACAACAAGATATTCAAGTTTACTTCGTGAAGCAGATCAAACATTTCAGATCAAAGAATTGGAACCAGATGAGGCCCTTCAGCTTTTCAACTGGCATGCCTTTAAGGACACCAAGCCAGCAGAAGTTTATATTGAGCTTTCGAAGAAAGCCGTTGATTTCTGTGGAGGGCTTCCCCTGGCTCTTGAG


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Populus tremula].

MPGMGKTTIAQVVFNQLCHGFEGSCFLSDINERSKQVNGLVPFQMQLLRDILKQDVANFDCVDRGKVLIKERLRSKRVLVVADDVAHPDQLNALMGDRSWFGPRSRLIITTRYSSLLREADQTFQIKELEPDEALQLFNWHAFKDTKPAEVYIELSKKAVDFCGGLPLALE

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-171 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MPGMGKTTIAQVVFNQLCHGFEGSCFLSDINERSKQVNGLVPFQMQLLRDILKQDVANFDCVDRGKVLIKERLRSKRVLVVADDVAHPDQLNALMGDRSWFGPRSRLIITTRYSSLLREADQTFQIKELEPDEALQLFNWHAFKDTKPAEVYIELSKKAVDFCGGLPLALE

HMMPanther: PTHR11017:SF130
1-171 PTHR11017:SF130,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)

MPGMGKTTIAQVVFNQLCHGFEGSCFLSDINERSKQVNGLVPFQMQLLRDILKQDVANFDCVDRGKVLIKERLRSKRVLVVADDVAHPDQLNALMGDRSWFGPRSRLIITTRYSSLLREADQTFQIKELEPDEALQLFNWHAFKDTKPAEVYIELSKKAVDFCGGLPLALE

superfamily: SSF52540
1-170 SSF52540

MPGMGKTTIAQVVFNQLCHGFEGSCFLSDINERSKQVNGLVPFQMQLLRDILKQDVANFDCVDRGKVLIKERLRSKRVLVVADDVAHPDQLNALMGDRSWFGPRSRLIITTRYSSLLREADQTFQIKELEPDEALQLFNWHAFKDTKPAEVYIELSKKAVDFCGGLPLAL

HMMPfam: PF00931
IPR002182
1-170 NB-ARC,NBS
NB-ARC

MPGMGKTTIAQVVFNQLCHGFEGSCFLSDINERSKQVNGLVPFQMQLLRDILKQDVANFDCVDRGKVLIKERLRSKRVLVVADDVAHPDQLNALMGDRSWFGPRSRLIITTRYSSLLREADQTFQIKELEPDEALQLFNWHAFKDTKPAEVYIELSKKAVDFCGGLPLAL

Gene3D: G3DSA:3.40.50.300
2-117 G3DSA:3.40.50.300

PGMGKTTIAQVVFNQLCHGFEGSCFLSDINERSKQVNGLVPFQMQLLRDILKQDVANFDCVDRGKVLIKERLRSKRVLVVADDVAHPDQLNALMGDRSWFGPRSRLIITTRYSSLL

FPrintScan: PR00364
IPR000767
72-86 DISEASERSIST
Disease resistance protein

RLRSKRVLVVADDVA

FPrintScan: PR00364
IPR000767
163-171 DISEASERSIST
Disease resistance protein

CGGLPLALE






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox