PRGDB00050623 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 71363544 (DQ104366)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Populus tremula

Comment?

Populus tremula clone P1-RGA1 disease resistance-like protein gene, partial cds.

DNA Sequence

ATGCCAGGAGTCGGTAAGACTACTATAGCAGAAGTTGTATTTAATCAACTCTGCAATGGATTCGAGGGAAGCTGTTTTCTTTCGGATATAAATGAAAGATCAAAACAATTTAATGGTGGTCTTGTTGATTTACAAAAGCAACTTCTTCATGATATTTTAAATCAATATGTTGCAAACTTCGATTGTGCTGATAGAGGAAAGGTTCTGATCAAAGAACGACTTCGTCGCAAAAGAGTTCTTGTTGTTGCTGATGATGTTGCTCATCAGGACCAACTAAAAGCTTTGATGGGAGAGCGAAGTTGGTTTGGTCCCGGAAGTATAGTAATTATTACAACGAGAGATTCAAATCTTCTTCGTGAAGCAGATCAAACATATCGGATCAAAGAATTGACACGAGATCAGTCCCTTCGGCTTTTCAGCTGGCATGCCTTTAAGGACACCAAGCCAGGAGAAGATTATATTGAGCTTTCAAAGAAAGCAGTTGATTACTGTGGAGGCTTGCCACTCGCTCTTGAG


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Populus tremula].

MPGVGKTTIAEVVFNQLCNGFEGSCFLSDINERSKQFNGGLVDLQKQLLHDILNQYVANFDCADRGKVLIKERLRRKRVLVVADDVAHQDQLKALMGERSWFGPGSIVIITTRDSNLLREADQTYRIKELTRDQSLRLFSWHAFKDTKPGEDYIELSKKAVDYCGGLPLALE

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-171 PTHR11017:SF20,SUBFAMILY NOT NAMED

MPGVGKTTIAEVVFNQLCNGFEGSCFLSDINERSKQFNGGLVDLQKQLLHDILNQYVANFDCADRGKVLIKERLRRKRVLVVADDVAHQDQLKALMGERSWFGPGSIVIITTRDSNLLREADQTYRIKELTRDQSLRLFSWHAFKDTKPGEDYIELSKKAVDYCGGLPLAL

superfamily: SSF52540
1-171 SSF52540

MPGVGKTTIAEVVFNQLCNGFEGSCFLSDINERSKQFNGGLVDLQKQLLHDILNQYVANFDCADRGKVLIKERLRRKRVLVVADDVAHQDQLKALMGERSWFGPGSIVIITTRDSNLLREADQTYRIKELTRDQSLRLFSWHAFKDTKPGEDYIELSKKAVDYCGGLPLAL

HMMPfam: PF00931
IPR002182
1-171 NB-ARC,NBS
NB-ARC

MPGVGKTTIAEVVFNQLCNGFEGSCFLSDINERSKQFNGGLVDLQKQLLHDILNQYVANFDCADRGKVLIKERLRRKRVLVVADDVAHQDQLKALMGERSWFGPGSIVIITTRDSNLLREADQTYRIKELTRDQSLRLFSWHAFKDTKPGEDYIELSKKAVDYCGGLPLAL

HMMPanther: PTHR11017
1-171 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MPGVGKTTIAEVVFNQLCNGFEGSCFLSDINERSKQFNGGLVDLQKQLLHDILNQYVANFDCADRGKVLIKERLRRKRVLVVADDVAHQDQLKALMGERSWFGPGSIVIITTRDSNLLREADQTYRIKELTRDQSLRLFSWHAFKDTKPGEDYIELSKKAVDYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
2-122 G3DSA:3.40.50.300

PGVGKTTIAEVVFNQLCNGFEGSCFLSDINERSKQFNGGLVDLQKQLLHDILNQYVANFDCADRGKVLIKERLRRKRVLVVADDVAHQDQLKALMGERSWFGPGSIVIITTRDSNLLREAD

FPrintScan: PR00364
IPR000767
73-87 DISEASERSIST
Disease resistance protein

RLRRKRVLVVADDVA

FPrintScan: PR00364
IPR000767
164-172 DISEASERSIST
Disease resistance protein

CGGLPLALE






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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