PRGDB00050637 (RPP13-like protein)

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RPP13-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 46410123 (AY487233)
Gene Class CNL
Domain Type NBS, LRR
Gene Species Arabidopsis arenosa

Comment?

Arabidopsis arenosa isolate Aren4 RPP13-like protein gene, partial cds.

DNA Sequence

AGCAAGAAGCGTGGGAGAGCTTGAAGAGAGCGTTATCGTGCAATCACGGAGGAAGTAGAGTCATCATCACTACGCGTATCAGAGCACTAGCGGAAGGCGTGGATGGGACAGTCTATGCCCATAAGTTAAGGTTCTTGACGTTTGAAGAAAGCTGGACATTGTTTGAACAGAAAGCATTCAGGAATATTGAAAAGATTGATGAGGATCTGCGGAGAACTGGAAAAGAAATGGTTCAAAAATGCGGTGGATTACCGCTTGCTATAGTCGTGCTTTCCGGGATTTTGTCTAGGAAAAGGACAAACGAGTGGCATGAGGTGTGTGCTAGTTTATGGAGACGTCTAAAGGATGACTCCATTCATGTTTGCACTGTGTTTGAYCTAAGCTTCARGGAGTTGCGGCATGAGTCCAAACTCTGTTTTCTGTACCTTAGCATCTTCCCAGAGGACTATGAGATTAATGTAGAGAAATTGATCCACTTATTTGTAGCAGAAGGATTTATACAAGAGGATGAAGAGATGATGATGGAAGACATGGCTCGATATTATATCGACGAGCTGATAGATAGAAGCCTAGTCAAAGCTGAAAGAATAGAACGAGGAAAAGTGATGTCCTGCAAAATCCATGATCTTCTGAGAGACGTGATTATCAAGAAAGCCAAAGAGCTTAACTTTGTAAATATATACAACGAGAAGCATCATTCTTCTGCTATTTGCAGAAGGGAAGTGTTTCATCTTATTAATAACAGCTTCCCGTACGACAGAAGTGTAAACAAACGGATGCGATCCTTCTTAATCATCAGAGAACGAGGGGGTATTGTCAAGACCACAAACTTGAAACTGAAGCTACTTCGAGTGCTAGATATGGGAAGCCTTTCTTTTTATAGTGGGTATTCTATCCTTACGACTTTACCAGATGTGATCGGGGATTTAATCCACCTGAGGTATCTAGGGATCGGTGATACTTATGTCAGCATTTTACCAGCTTCCATCTCCAATTTA


Protein sequences

Name Description Sequence
RPP13-like protein RPP13-like protein [Arabidopsis arenosa].

QEAWESLKRALSCNHGGSRVIITTRIRALAEGVDGTVYAHKLRFLTFEESWTLFEQKAFRNIEKIDEDLRRTGKEMVQKCGGLPLAIVVLSGILSRKRTNEWHEVCASLWRRLKDDSIHVCTVFDLSFXELRHESKLCFLYLSIFPEDYEINVEKLIHLFVAEGFIQEDEEMMMEDMARYYIDELIDRSLVKAERIERGKVMSCKIHDLLRDVIIKKAKELNFVNIYNEKHHSSAICRREVFHLINNSFPYDRSVNKRMRSFLIIRERGGIVKTTNLKLKLLRVLDMGSLSFYSGYSILTTLPDVIGDLIHLRYLGIGDTYVSILPASISNL


Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-116 SSF52540

QEAWESLKRALSCNHGGSRVIITTRIRALAEGVDGTVYAHKLRFLTFEESWTLFEQKAFRNIEKIDEDLRRTGKEMVQKCGGLPLAIVVLSGILSRKRTNEWHEVCASLWRRLKDD

HMMPanther: PTHR11017:SF14
2-324 PTHR11017:SF14

EAWESLKRALSCNHGGSRVIITTRIRALAEGVDGTVYAHKLRFLTFEESWTLFEQKAFRNIEKIDEDLRRTGKEMVQKCGGLPLAIVVLSGILSRKRTNEWHEVCASLWRRLKDDSIHVCTVFDLSFXELRHESKLCFLYLSIFPEDYEINVEKLIHLFVAEGFIQEDEEMMMEDMARYYIDELIDRSLVKAERIERGKVMSCKIHDLLRDVIIKKAKELNFVNIYNEKHHSSAICRREVFHLINNSFPYDRSVNKRMRSFLIIRERGGIVKTTNLKLKLLRVLDMGSLSFYSGYSILTTLPDVIGDLIHLRYLGIGDTYVSI

HMMPanther: PTHR11017
2-324 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

EAWESLKRALSCNHGGSRVIITTRIRALAEGVDGTVYAHKLRFLTFEESWTLFEQKAFRNIEKIDEDLRRTGKEMVQKCGGLPLAIVVLSGILSRKRTNEWHEVCASLWRRLKDDSIHVCTVFDLSFXELRHESKLCFLYLSIFPEDYEINVEKLIHLFVAEGFIQEDEEMMMEDMARYYIDELIDRSLVKAERIERGKVMSCKIHDLLRDVIIKKAKELNFVNIYNEKHHSSAICRREVFHLINNSFPYDRSVNKRMRSFLIIRERGGIVKTTNLKLKLLRVLDMGSLSFYSGYSILTTLPDVIGDLIHLRYLGIGDTYVSI

HMMPfam: PF00931
IPR002182
2-169 NB-ARC,NBS
NB-ARC

EAWESLKRALSCNHGGSRVIITTRIRALAEGVDGTVYAHKLRFLTFEESWTLFEQKAFRNIEKIDEDLRRTGKEMVQKCGGLPLAIVVLSGILSRKRTNEWHEVCASLWRRLKDDSIHVCTVFDLSFXELRHESKLCFLYLSIFPEDYEINVEKLIHLFVAEGFIQED

superfamily: SSF52058
205-332 SSF52058,LRR

KIHDLLRDVIIKKAKELNFVNIYNEKHHSSAICRREVFHLINNSFPYDRSVNKRMRSFLIIRERGGIVKTTNLKLKLLRVLDMGSLSFYSGYSILTTLPDVIGDLIHLRYLGIGDTYVSILPASISNL


List of References

Laura E Rose, Peter D Bittner-Eddy, Charles H Langley, Eric B Holub, Richard W Michelmore, Jim L Beynon
The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana.
Genetics: 2004, 166(3);1517-27
PubMed:15082565 WorldCat.org (P p)





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