PRGDB00050645 (unnamed protein product [Arabidopsis thaliana].)

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unnamed protein product [Arabidopsis thaliana].
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 2924731 (AB011481)
Gene Class TNL
Domain Type TIR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSI17.

DNA Sequence

ATGGATTCTTCTTTTCTCTCTGGTTTTTGTGCTGCTGCCATAACCTTCTTCACTCTTTTCGGTACAATATATTTCATGTTTTATAGAAAAGGCAAATCCCATCAAGAAAACAAAACAATAGCTTCTTCTTTAATATCTATTTCATCTACTCCATCTTCTTTACCTCGAAAACGGAAACACGATGTCTTCCCTAGCTTCCACGGGGCAGATGTTCGCAAAACCTTTCTTGCTCACATCCTAAAAGAGTTCAAAGGGAAAGGAGTCGTTCCATTCATTGATAATGATATCGAGAGGAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATTAGAGGATCGAAGATCGCGATCGTCTTGCTCTCAAGGAACTATGCTTCTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGATCATGAAGTGTAGAGAACAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCCAACAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGGTAAACCAAAAGAGGAAATTAAGAGATGGCAAAAAGTTTTGGAGGATGTGGCAACAATCGCTGGGGAGCATTCCCGTAACTGGTTAGCTTTCTGGATTTATATTTTGCTCTGA


Protein sequences

Name Description Sequence
unnamed protein product [Arabidopsis thaliana]. unnamed protein product [Arabidopsis thaliana].

MDSSFLSGFCAAAITFFTLFGTIYFMFYRKGKSHQENKTIASSLISISSTPSSLPRKRKHDVFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATIAGEHSRNWLAFWIYILL

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
48-199 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SSTPSSLPRKRKHDVFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATIAGE

Gene3D: G3DSA:3.40.50.10140
56-194 G3DSA:3.40.50.10140

RKRKHDVFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVA

ProfileScan: PS50104
IPR000157
58-196 TIR
Toll/interleukin-1 receptor homology (TIR) domain

RKHDVFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATI

HMMSmart: SM00255
IPR000157
59-196 TIR
Toll/interleukin-1 receptor homology (TIR) domain

KHDVFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATI

HMMPfam: PF01582
IPR000157
62-191 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFPSFHGADVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLE

HMMPanther: PTHR23155:SF297
70-204 PTHR23155:SF297

DVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATIAGEHSRNW

HMMPanther: PTHR23155
70-204 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

DVRKTFLAHILKEFKGKGVVPFIDNDIERSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKRWQKVLEDVATIAGEHSRNW


List of References

T Kaneko, H Kotani, Y Nakamura, S Sato, E Asamizu, N Miyajima, S Tabata
Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.
DNA Res.: 1998, 5(2);131-45
PubMed:9679202 WorldCat.org (P p)





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