PRGDB00050695 (disease resistance protein-like protein MsR1)

disease resistance protein-like protein MsR1
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	34391518 (AY145085)
Gene Class	CNL
Domain Type	LRR, NBS, Ser-Thr Kinase, Ser-Thr Kinase, Others
Gene Species	Medicago sativa
	Comment?

Medicago sativa disease resistance protein-like protein MsR1 mRNA, complete cds.

DNA Sequence

ATGAGTAGCGCCACACATATTATTACCCTTGCAACAAGATTTCAATTTCATGATGTCTTGAACAAAATATCTCAAATTGCTGAAAAAGCACAAGAGAACCAAAGTTCAAGGCGATCGTTGAGATTAATCTTAAGGAATTTATCTCCCGTTGTACAAGATATAAAGCAATACAATGATCATTTGGATCACCCCAGAGAAGAAATAAATAGTTTGATAGAAGAAAATGATGCAGAAGAAAGTGCATGCAAATGTTCTTCTGAGAATGATTCCAATGTGGTTGAGAAGCTCAAGAATGAAACTTTTGAAGCTGGACCACCTTTCAAGTGTCCTTTTGATGTTCCTGAAAATCCAAAATTCACTGTTGGGTTGGATATACCATTTAGCAAGTTGAAAATGGAGCTTTTAAGGGATGGTAGTTCCACCCTTGTGTTGACTGGCTTAGGAGGATTGGGGAAGACCACTTTGGCTACTAAGCTTTGTTGGGATCAAGAAGTTAATGGTAAATTCATGGAAAACATTATATTTGTCACCTTCTCAAAAACACCCATGTTGAAGACTATTGTAGAGAGAATACATGAACATTGTGGATATCCAGTACCTGAGTTTCAAAATGATGAAGATGCTGTCAATAGGTTAGGACTTCTGTTGAAGAAAGTTGAGGGAAGTCCATTATTGTTGGTTCTGGATGATGTTTGGCCAAGCTCAGAATCCCTTGTTGAGAAACTTCAATTCCAGATATCAGATTTCAAAATTCTGGTGACTTCAAGGGTTGCATTTCCAAGGTTTAGCACAACATGTATCCTAAAACCTCTTGCTCATGAAGACGCAGTAACGCTTTTCCATCACTATGCTCTGATGGAAAAAAATAGTTCAGATATTATCGACAAAAATCTTGTCGAAAAGGTCGTTAGAAGTTGCCAAGGTTTACCGCTTACCATTAAAGTAATTGCTACATCGCTAAAAAATCGGCCTCATGACTTGTGGCGTAAGATAGTGAAGGAACTGTCACAAGGTCATTCTATTCTTGATTCTAATACCGAATTACTTACTCGCCTCCAAAAGATCTTCGATGTTTTGGAAGATAATCCCACAATCATTGAGTGCTTCATGGACCTAGCCTTATTTCCCGAAGACCATAGAATTCCTGTCGCTGCTCTCGTTGATATGTGGGCAGAGCTGTATAGACTAGATGACACCGGAATACAAGCAATGGAAATCATCAACAAATTAGGCATCATGAATTTGGCTAATGTCATAATACCAAGGAAAGATGCAAGTGACACAGACAATAACAACTACAATAATCACTTCATCATGCTTCATGATATTCTAAGAGAACTTGGAATTTACCGAAGCACCAAGGAACCATTTGAGCAGAGAAAAAGACTGATTATTGACATGCATAAAAATAAAAGTGGGCTCACGGAGAAGCAACAAGGCTTGATGATCCGTATATTGTCAAAGTTTATGAGATTGTGTGTTAAACAGAATCCTCAACAGCTCGCTGCCCGTATATTGTCGGTATCAACTGATGAAACATGTGCGTTGGATTGGTCTCAAATGGAACCAGCTCAGGTTGAGGTTCTGATTTTAAATCTTCATACCAAGCAGTACTCATTACCCGAGTGGATTGGAAAAATGAGTAAACTAAAAGTTCTGATAATCACAAACTACACTGTCCATCCTTCTGAACTGACCAACTTTGAGCTTCTCAGTTCTTTACAGAATCTGGAAAAAATTAGACTAGAGCGAATTTCCGTTCCTTCGTTCGCCACAGTAAAGAATCTGAAAAAACTATCGCTCTACATGTGTAATACAAGACTGGCTTTTGAAAAAGGTAGCATCCTAATTTCAGATGCATTTCCAAATTTAGAAGAATTGAACATTGATTACTGCAAAGATTTGTTGGTATTGCCAACTGGTATCTGTGATATCATCTCACTAAAGAAGCTCAGTGTTACTAATTGCCACAAGATTTCTTCACTTCCTGAAGATATTGGAAAATTGGAGAATTTGGAACTTCTAAGCCTCAGTTCATGTACTGACTTGGAAGCTATACCGACTTCCATTGAAAAGCTGTTAAATCTAAAACATCTTGACATTTCAACTGCGTAA

Protein sequences

Name	Description	Sequence
disease resistance protein-like protein MsR1	disease resistance protein-like protein MsR1 [Medicago sativa].	MSSATHIITLATRFQFHDVLNKISQIAEKAQENQSSRRSLRLILRNLSPVVQDIKQYNDHLDHPREEINSLIEENDAEESACKCSSENDSNVVEKLKNETFEAGPPFKCPFDVPENPKFTVGLDIPFSKLKMELLRDGSSTLVLTGLGGLGKTTLATKLCWDQEVNGKFMENIIFVTFSKTPMLKTIVERIHEHCGYPVPEFQNDEDAVNRLGLLLKKVEGSPLLLVLDDVWPSSESLVEKLQFQISDFKILVTSRVAFPRFSTTCILKPLAHEDAVTLFHHYALMEKNSSDIIDKNLVEKVVRSCQGLPLTIKVIATSLKNRPHDLWRKIVKELSQGHSILDSNTELLTRLQKIFDVLEDNPTIIECFMDLALFPEDHRIPVAALVDMWAELYRLDDTGIQAMEIINKLGIMNLANVIIPRKDASDTDNNNYNNHFIMLHDILRELGIYRSTKEPFEQRKRLIIDMHKNKSGLTEKQQGLMIRILSKFMRLCVKQNPQQLAARILSVSTDETCALDWSQMEPAQVEVLILNLHTKQYSLPEWIGKMSKLKVLIITNYTVHPSELTNFELLSSLQNLEKIRLERISVPSFATVKNLKKLSLYMCNTRLAFEKGSILISDAFPNLEELNIDYCKDLLVLPTGICDIISLKKLSVTNCHKISSLPEDIGKLENLELLSLSSCTDLEAIPTSIEKLLNLKHLDISTA

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	108-335	SSF52540	KCPFDVPENPKFTVGLDIPFSKLKMELLRDGSSTLVLTGLGGLGKTTLATKLCWDQEVNGKFMENIIFVTFSKTPMLKTIVERIHEHCGYPVPEFQNDEDAVNRLGLLLKKVEGSPLLLVLDDVWPSSESLVEKLQFQISDFKILVTSRVAFPRFSTTCILKPLAHEDAVTLFHHYALMEKNSSDIIDKNLVEKVVRSCQGLPLTIKVIATSLKNRPHDLWRKIVKEL
HMMPanther: PTHR23155:SF239	118-702	PTHR23155:SF239,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)	KFTVGLDIPFSKLKMELLRDGSSTLVLTGLGGLGKTTLATKLCWDQEVNGKFMENIIFVTFSKTPMLKTIVERIHEHCGYPVPEFQNDEDAVNRLGLLLKKVEGSPLLLVLDDVWPSSESLVEKLQFQISDFKILVTSRVAFPRFSTTCILKPLAHEDAVTLFHHYALMEKNSSDIIDKNLVEKVVRSCQGLPLTIKVIATSLKNRPHDLWRKIVKELSQGHSILDSNTELLTRLQKIFDVLEDNPTIIECFMDLALFPEDHRIPVAALVDMWAELYRLDDTGIQAMEIINKLGIMNLANVIIPRKDASDTDNNNYNNHFIMLHDILRELGIYRSTKEPFEQRKRLIIDMHKNKSGLTEKQQGLMIRILSKFMRLCVKQNPQQLAARILSVSTDETCALDWSQMEPAQVEVLILNLHTKQYSLPEWIGKMSKLKVLIITNYTVHPSELTNFELLSSLQNLEKIRLERISVPSFATVKNLKKLSLYMCNTRLAFEKGSILISDAFPNLEELNIDYCKDLLVLPTGICDIISLKKLSVTNCHKISSLPEDIGKLENLELLSLSSCTDLEAIPTSIEKLLNLKHLDIS
HMMPanther: PTHR23155	118-702	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	KFTVGLDIPFSKLKMELLRDGSSTLVLTGLGGLGKTTLATKLCWDQEVNGKFMENIIFVTFSKTPMLKTIVERIHEHCGYPVPEFQNDEDAVNRLGLLLKKVEGSPLLLVLDDVWPSSESLVEKLQFQISDFKILVTSRVAFPRFSTTCILKPLAHEDAVTLFHHYALMEKNSSDIIDKNLVEKVVRSCQGLPLTIKVIATSLKNRPHDLWRKIVKELSQGHSILDSNTELLTRLQKIFDVLEDNPTIIECFMDLALFPEDHRIPVAALVDMWAELYRLDDTGIQAMEIINKLGIMNLANVIIPRKDASDTDNNNYNNHFIMLHDILRELGIYRSTKEPFEQRKRLIIDMHKNKSGLTEKQQGLMIRILSKFMRLCVKQNPQQLAARILSVSTDETCALDWSQMEPAQVEVLILNLHTKQYSLPEWIGKMSKLKVLIITNYTVHPSELTNFELLSSLQNLEKIRLERISVPSFATVKNLKKLSLYMCNTRLAFEKGSILISDAFPNLEELNIDYCKDLLVLPTGICDIISLKKLSVTNCHKISSLPEDIGKLENLELLSLSSCTDLEAIPTSIEKLLNLKHLDIS
HMMPfam: PF00931 IPR002182	130-392	NB-ARC,NBS NB-ARC	LKMELLRDGSSTLVLTGLGGLGKTTLATKLCWDQEVNGKFMENIIFVTFSKTPMLKTIVERIHEHCGYPVPEFQNDEDAVNRLGLLLKKVEGSPLLLVLDDVWPSSESLVEKLQFQISDFKILVTSRVAFPRFSTTCILKPLAHEDAVTLFHHYALMEKNSSDIIDKNLVEKVVRSCQGLPLTIKVIATSLKNRPHDLWRKIVKELSQGHSILDSNTELLTRLQKIFDVLEDNPTIIECFMDLALFPEDHRIPVAALVDMWAE
Gene3D: G3DSA:3.40.50.300	136-244	G3DSA:3.40.50.300	RDGSSTLVLTGLGGLGKTTLATKLCWDQEVNGKFMENIIFVTFSKTPMLKTIVERIHEHCGYPVPEFQNDEDAVNRLGLLLKKVEGSPLLLVLDDVWPSSESLVEKLQF
FPrintScan: PR00364 IPR000767	141-156	DISEASERSIST Disease resistance protein	TLVLTGLGGLGKTTLA
FPrintScan: PR00364 IPR000767	218-232	DISEASERSIST Disease resistance protein	KVEGSPLLLVLDDVW
FPrintScan: PR00364 IPR000767	306-320	DISEASERSIST Disease resistance protein	CQGLPLTIKVIATSL
Gene3D: G3DSA:3.80.10.10	531-702	G3DSA:3.80.10.10	LNLHTKQYSLPEWIGKMSKLKVLIITNYTVHPSELTNFELLSSLQNLEKIRLERISVPSFATVKNLKKLSLYMCNTRLAFEKGSILISDAFPNLEELNIDYCKDLLVLPTGICDIISLKKLSVTNCHKISSLPEDIGKLENLELLSLSSCTDLEAIPTSIEKLLNLKHLDIS
superfamily: SSF52047	539-702	SSF52047,LRR	SLPEWIGKMSKLKVLIITNYTVHPSELTNFELLSSLQNLEKIRLERISVPSFATVKNLKKLSLYMCNTRLAFEKGSILISDAFPNLEELNIDYCKDLLVLPTGICDIISLKKLSVTNCHKISSLPEDIGKLENLELLSLSSCTDLEAIPTSIEKLLNLKHLDIS
FPrintScan: PR00364 IPR000767	667-683	DISEASERSIST Disease resistance protein	GKLENLELLSLSSCTDL

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Analyses

Blast

Blast matches against Reference R-Genes. Show