PRGDB00050697 (At1g31540)
| At1g31540 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 34098812 (BT010346) |
| Gene Class | TNL |
| Domain Type | LRR, LRR, NBS, TIR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGCTTCGTCATCTTCTTCTCACAATTGGTTATATGATGTTTTCTTGAGCTTCAGAGGGGAAGACGTCCGCGTAACATTCCGTAGCCACTTTCTCAAAGAGCTTGATCGGAAACTAATCACTGCTTTCAGAGACAATGAGATCGAGAGAAGCCACTCTCTCTGGCCCGATCTTGAACAAGCCATCAAGGAATCCAGGATCGCTGTGGTCGTTTTCTCAAAAAACTACGCTTCATCGAGCTGGTGTCTTAACGAGTTGCTGGAGATTGTAAACTGCAATGATAAAATTGTCATACCAGTTTTCTACCATGTGGATCCTTCCCAAGTGAGGCATCAAATCGGCGACTTCGGAAAGATCTTTGAAAATACTTGCAAGAGACAAACAGATGAGGAAGTGAAAAATCAATGGAAGAAAGCGTTGACTCTTGTAGCGAATATGCTTGGATTTGACTCTGCCAAATGGAACGACGAAGCAAAAATGATTGAAGAAATAGCCAATGATGTTTTGGGTAAACTGCTTTTAACTACACCCAAGGATTCTGAGGAACTTGTTGGCATCGAAGATCACATCGCTGAAATGAGTTTACTGCTGCAACTGGAATCTAAAGAAGTGAGAATGGTTGGTATATCGGGTTCCTCAGGGATTGGTAAGACTACCATTGCAAGAGCTCTGTTTAAACGACTTTCTCGACATTTCCAAGGTAGCACTTTCATCGACAGGGCTTTTGTATCTTATAGTCGGAATATTTATAGTGGCGCCAATCCGGACGACCCCAATATGAAGTTGCAGCTACAAGGACACTTCCTATCTGAAATTCTCGGGAAAAAAGACATAAAGATAGATGATCCAGCTGCATTGGAAGAGAGGCTAAAGCACCAAAAAGTTCTTATCATTATTGATGATTTGGATGATATAATGGTACTAGATACATTAGTGGGTCAAACTCAATGGTTTGGATATGGGAGCAGAATCATTGTGGTTACAAATGATAAGCACTTCTTGATTGCTCATGGAATTGATCATATTTATGAAGTAAGTTTCCCAACTGATGTGCATGCTTGTCAGATGTTATGTCAATCTGCATTCAAGCAAAACTATGCTCCTAAAGGTTTTGAGGATCTTGTAGTTGATGTAGTAAGACATGCGGGCAATTTTCCTTTGGGTCTTAATCTTTTGGGTAAATATTTGCGGAGGAGGGATATGGAATACTGGATGGATATGCTGCCAAGGCTTGAGAATAGTCTACGTATAGACGGTAAAATTGAAAAAATACTAAGAATCAGCTATGATGGGTTAGAGAGTGAAGATCAAGAGATATTTCGTCATATCGCATGTCTTTTCAATCATATGGAAGTCACAACCATCAAGTCCTTGCTGGCAGATAGTGATGTTAGTTTTGCACTAGAAAACCTAGCTGATAAGTCCCTCATTCATGTCAGACAAGGTTATGTGGTGATGCACCGTTCGCTACAAGAAATGGGTAGAAAAATTGTTCGCATTCAGTCCATTGACAAACCTGGAGAACGAGAATTTCTGGTGGATCCAAATGATATACATGATATACTCAATGCATGCACTGGTACTCAAAAGGTTTTAGGTATATCACTGGATATAAGGAATATTCGTGAGTTGGATGTACATGAGAGGGCCTTCAAAGGGATGTCTAATCTCCGTTTCTTAGAAATTAAGAACTTTGGTTTGAAAGAAGACGGTTTGCATTTACCTCCAAGTTTCGACTATTTGCCCCGTACACTCAAACTATTGTGCTGGTCCAAATTTCCAATGAGGTGTATGCCTTTTGGTTTTCGTCCTGAAAACCTTGTCAAGCTCGAAATGCAGTACAGCAAGCTACATAAGCTATGGGAAGGAGTTGCGCCACTTACATGTCTAAAGGAAATGGATCTGCACGGATCATCAAACCTGAAAGTAATTCCAGATCTTTCTGAAGCTACTAATCTCGAGATACTTAATCTTAAGTTTTGCGAGAGTTTGGTCGAGCTCCCGTCCTCTATACGAAATCTCAATAAACTGTTGAACTTGGACATGCTAAACTGCAAAAGTCTGAAAATTCTTCCTACCGGATTCAACCTCAAATCTCTTGACCGCCTCAATCTCTATCATTGCTCAAAGTTGAAGACTTTTCCCAAATTCTCAACCAACATCTCAGTTCTCAATCTAAATCTAACAAACATTGAAGATTTCCCTTCTAATTTACATCTCGAGAATCTTGTTGAGTTTAGAATATCAAAAGAAGAGAGTGATGAGAAACAATGGGAAGAAGAGAAGGTAAGTAGTTCTACACTTAACATTATCTCCAAACTCTTTCCCTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| At1g31540 | At1g31540 [Arabidopsis thaliana]. | MASSSSSHNWLYDVFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKALTLVANMLGFDSAKWNDEAKMIEEIANDVLGKLLLTTPKDSEELVGIEDHIAEMSLLLQLESKEVRMVGISGSSGIGKTTIARALFKRLSRHFQGSTFIDRAFVSYSRNIYSGANPDDPNMKLQLQGHFLSEILGKKDIKIDDPAALEERLKHQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLIAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPKGFEDLVVDVVRHAGNFPLGLNLLGKYLRRRDMEYWMDMLPRLENSLRIDGKIEKILRISYDGLESEDQEIFRHIACLFNHMEVTTIKSLLADSDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDKPGEREFLVDPNDIHDILNACTGTQKVLGISLDIRNIRELDVHERAFKGMSNLRFLEIKNFGLKEDGLHLPPSFDYLPRTLKLLCWSKFPMRCMPFGFRPENLVKLEMQYSKLHKLWEGVAPLTCLKEMDLHGSSNLKVIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNCKSLKILPTGFNLKSLDRLNLYHCSKLKTFPKFSTNISVLNLNLTNIEDFPSNLHLENLVEFRISKEESDEKQWEEEKVSSSTLNIISKLFP |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
1-149 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
MASSSSSHNWLYDVFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKALTLVANMLGF |
| Gene3D: G3DSA:3.40.50.10140 | 8-140 | G3DSA:3.40.50.10140 | HNWLYDVFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKAL |
| ProfileScan: PS50104 IPR000157
|
10-146 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
WLYDVFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKALTLVANM |
| HMMSmart: SM00255 IPR000157
|
11-146 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
LYDVFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKALTLVANM |
| HMMPfam: PF01582 IPR000157
|
14-140 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKAL |
| HMMPanther: PTHR11017 | 32-774 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKALTLVANMLGFDSAKWNDEAKMIEEIANDVLGKLLLTTPKDSEELVGIEDHIAEMSLLLQLESKEVRMVGISGSSGIGKTTIARALFKRLSRHFQGSTFIDRAFVSYSRNIYSGANPDDPNMKLQLQGHFLSEILGKKDIKIDDPAALEERLKHQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLIAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPKGFEDLVVDVVRHAGNFPLGLNLLGKYLRRRDMEYWMDMLPRLENSLRIDGKIEKILRISYDGLESEDQEIFRHIACLFNHMEVTTIKSLLADSDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDKPGEREFLVDPNDIHDILNACTGTQKVLGISLDIRNIRELDVHERAFKGMSNLRFLEIKNFGLKEDGLHLPPSFDYLPRTLKLLCWSKFPMRCMPFGFRPENLVKLEMQYSKLHKLWEGVAPLTCLKEMDLHGSSNLKVIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNCKSLKILPTGFNLKSLDRLNLYHCSKLKTFPKFSTNISVLNLNLTNIEDFPSNLHLENLVEFRISKEESDEKQWEEEKVSSSTLNIISKL |
| HMMPanther: PTHR11017:SF20 | 32-774 | PTHR11017:SF20,SUBFAMILY NOT NAMED | LKELDRKLITAFRDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKALTLVANMLGFDSAKWNDEAKMIEEIANDVLGKLLLTTPKDSEELVGIEDHIAEMSLLLQLESKEVRMVGISGSSGIGKTTIARALFKRLSRHFQGSTFIDRAFVSYSRNIYSGANPDDPNMKLQLQGHFLSEILGKKDIKIDDPAALEERLKHQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLIAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPKGFEDLVVDVVRHAGNFPLGLNLLGKYLRRRDMEYWMDMLPRLENSLRIDGKIEKILRISYDGLESEDQEIFRHIACLFNHMEVTTIKSLLADSDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDKPGEREFLVDPNDIHDILNACTGTQKVLGISLDIRNIRELDVHERAFKGMSNLRFLEIKNFGLKEDGLHLPPSFDYLPRTLKLLCWSKFPMRCMPFGFRPENLVKLEMQYSKLHKLWEGVAPLTCLKEMDLHGSSNLKVIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNCKSLKILPTGFNLKSLDRLNLYHCSKLKTFPKFSTNISVLNLNLTNIEDFPSNLHLENLVEFRISKEESDEKQWEEEKVSSSTLNIISKL |
| superfamily: SSF52540 | 65-441 | SSF52540 | SRIAVVVFSKNYASSSWCLNELLEIVNCNDKIVIPVFYHVDPSQVRHQIGDFGKIFENTCKRQTDEEVKNQWKKALTLVANMLGFDSAKWNDEAKMIEEIANDVLGKLLLTTPKDSEELVGIEDHIAEMSLLLQLESKEVRMVGISGSSGIGKTTIARALFKRLSRHFQGSTFIDRAFVSYSRNIYSGANPDDPNMKLQLQGHFLSEILGKKDIKIDDPAALEERLKHQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLIAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPKGFEDLVVDVVRHAGNFPLGLNLLGKYLRRRDMEYWMDMLPRLENSLRIDGKIEKILRISYDGLESEDQEIFR |
| Gene3D: G3DSA:3.40.50.300 | 177-347 | G3DSA:3.40.50.300 | PKDSEELVGIEDHIAEMSLLLQLESKEVRMVGISGSSGIGKTTIARALFKRLSRHFQGSTFIDRAFVSYSRNIYSGANPDDPNMKLQLQGHFLSEILGKKDIKIDDPAALEERLKHQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLIAHGIDHIYEVSF |
| HMMPfam: PF00931 IPR002182
|
187-454 | NB-ARC,NBS NB-ARC
|
EDHIAEMSLLLQLESKEVRMVGISGSSGIGKTTIARALFKRLSRHFQGSTFIDRAFVSYSRNIYSGANPDDPNMKLQLQGHFLSEILGKKDIKIDDPAALEERLKHQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLIAHGIDHIYEVSFPTDVHACQMLCQSAFKQNYAPKGFEDLVVDVVRHAGNFPLGLNLLGKYLRRRDMEYWMDMLPRLENSLRIDGKIEKILRISYDGLESEDQEIFRHIACLFNHMEVTT |
| HMMSmart: SM00382 IPR003593
|
203-349 | AAA,NBS AAA+ ATPase domain
|
EVRMVGISGSSGIGKTTIARALFKRLSRHFQGSTFIDRAFVSYSRNIYSGANPDDPNMKLQLQGHFLSEILGKKDIKIDDPAALEERLKHQKVLIIIDDLDDIMVLDTLVGQTQWFGYGSRIIVVTNDKHFLIAHGIDHIYEVSFPT |
| FPrintScan: PR00364 IPR000767
|
206-221 | DISEASERSIST Disease resistance protein
|
MVGISGSSGIGKTTIA |
| FPrintScan: PR00364 IPR000767
|
289-303 | DISEASERSIST Disease resistance protein
|
RLKHQKVLIIIDDLD |
| FPrintScan: PR00364 IPR000767
|
382-396 | DISEASERSIST Disease resistance protein
|
AGNFPLGLNLLGKYL |
| superfamily: SSF46785 | 419-523 | SSF46785 | GKIEKILRISYDGLESEDQEIFRHIACLFNHMEVTTIKSLLADSDVSFALENLADKSLIHVRQGYVVMHRSLQEMGRKIVRIQSIDKPGEREFLVDPNDIHDILN |
| Gene3D: G3DSA:3.40.50.300 | 468-495 | G3DSA:3.40.50.300 | LENLADKSLIHVRQGYVVMHRSLQEMGR |
| superfamily: SSF52058 | 517-749 | SSF52058,LRR | DIHDILNACTGTQKVLGISLDIRNIRELDVHERAFKGMSNLRFLEIKNFGLKEDGLHLPPSFDYLPRTLKLLCWSKFPMRCMPFGFRPENLVKLEMQYSKLHKLWEGVAPLTCLKEMDLHGSSNLKVIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNCKSLKILPTGFNLKSLDRLNLYHCSKLKTFPKFSTNISVLNLNLTNIEDFPSNLHLENLVEFRIS |
| Gene3D: G3DSA:3.80.10.10 | 536-750 | G3DSA:3.80.10.10 | LDIRNIRELDVHERAFKGMSNLRFLEIKNFGLKEDGLHLPPSFDYLPRTLKLLCWSKFPMRCMPFGFRPENLVKLEMQYSKLHKLWEGVAPLTCLKEMDLHGSSNLKVIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNCKSLKILPTGFNLKSLDRLNLYHCSKLKTFPKFSTNISVLNLNLTNIEDFPSNLHLENLVEFRISK |
| HMMPfam: PF07725 IPR011713
|
606-624 | LRR_3 Leucine-rich repeat 3
|
NLVKLEMQYSKLHKLWEGV |
| FPrintScan: PR00364 IPR000767
|
672-688 | DISEASERSIST Disease resistance protein
|
RNLNKLLNLDMLNCKSL |
List of Contributions
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