PRGDB00050707 (serine/threonine protein kinase)

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serine/threonine protein kinase
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 31323805 (AF510988)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza rufipogon

Comment?

Oryza rufipogon isolate ys106 serine/threonine protein kinase gene, partial cds.

DNA Sequence

TTTCGGGTCGGTGTATCGGGGGAGGCTGAGCATCAAGGGGACGGTGACGGAGGCGGCGGTGAAGCAGCTGGACCGGAACGGGATGCGGGGGAACCGGGAGTTCCTTGTGGAGGTGCTGATGCTGAGCCTGCTGGCGGAGCACCCAAACCTGGTGACGCTGCTGGGGTACTGCACCGACGGCGACCACCGCATCCTGGTGTACGAGTACATGGCCCGCGGCTCCCTGGAGGACCACCTGCTTGACCTGCCCCCTGGCGCCGCGGCTCTGGACTGGACCACTCGGATGCGCATCGCGCAGGGCGCCGCCCGCGGCCTTGAGCACCTGCACGACGCTGCTCGTCCCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCCTCCTTCCAGGCCCGCCTCTCCGACTTCGGCCTCGCCAAGGTCGGCCCCGTCGGCGACAAGACCCACGTCTCCACCCGCGTCATGGGCACCTACGGCTACTGCGCCCCCGAGTACGCTCTCACCGGCAAGCTCACCACCTGCTCCGACGTCTACAGCTTCGGCAT


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza rufipogon].

FGSVYRGRLSIKGTVTEAAVKQLDRNGMRGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFG

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420:SF657
1-184 PTHR24420:SF657

FGSVYRGRLSIKGTVTEAAVKQLDRNGMRGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFG

HMMPfam: PF07714
IPR001245
1-184 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

FGSVYRGRLSIKGTVTEAAVKQLDRNGMRGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFG

Gene3D: G3DSA:3.30.200.20
1-57 G3DSA:3.30.200.20

FGSVYRGRLSIKGTVTEAAVKQLDRNGMRGNREFLVEVLMLSLLAEHPNLVTLLGYC

superfamily: SSF56112
IPR011009
1-184 Kinase_like
Protein kinase-like domain

FGSVYRGRLSIKGTVTEAAVKQLDRNGMRGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFG

HMMPanther: PTHR24420
1-184 PTHR24420,FAMILY NOT NAMED

FGSVYRGRLSIKGTVTEAAVKQLDRNGMRGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFG

ProfileScan: PS50011
IPR000719
1-184 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FGSVYRGRLSIKGTVTEAAVKQLDRNGMRGNREFLVEVLMLSLLAEHPNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFG

Gene3D: G3DSA:1.10.510.10
58-184 G3DSA:1.10.510.10

TDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRMRIAQGAARGLEHLHDAARPPVIYRDFKASNILLDSSFQARLSDFGLAKVGPVGDKTHVSTRVMGTYGYCAPEYALTGKLTTCSDVYSFG

PatternScan: PS00108
IPR008271
116-128 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

VIYRDFKASNILL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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