PRGDB00050749 (R 11)

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R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class TNL
Domain Type LRR, NBS, LRR, TIR, Others
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGCTGCAACAACACGTTCCCTTGCATCCATCTACGATGTGTTCCTCAACTTCAGAGGGGAAGACACGCGCTATGGTTTTACTGGCAATCTCTACAAGGCTCTTTGTGACAAGGGAATTCATACCTTCTTTGACGAAGACAAGCTTCACAGCGGAGACGACATAACACCTGCACTTTCCAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTCAAAACTATGCTTCTTCCTCGTTTTGTTTAGATGAACTTGTAACCATCCTTCACTGCAAGAGGGAAGGGTTGTTGGTTATACCGGTCTTTCATAACGTAGATCCTTCTGCTGTCAGACACCTGAAAGGTAGTTATGGAGAAGCAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAAGAAGGAGAAGCTGCAGAAATGGAGGATGGCTTTGCATCAAGTAGCTGACTTGTCCGGCTATCATTTCAAAGATGGAGATGCATATGAATACAAGTTTATTGGGAATATTGTTGAGGAGGTCTCTAGGAAGATTAATTGTGCTCCTTTACATGTTGCGGATTATCCAGTTGGTCTAGGGTCACAAGTGATAGAGGTAATGAAGCTTTTGGATGTTGGATCCGATGATCTTGTCCACATCATAGGGATCCATGGAATGGGCGGGTTAGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTTATAGCTCTCCATTTTGATGAATCCTGTTTTCTTCAAAACGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACTTTCAAAGCATCCTTCTTTCAAAATTACTTGGTGAGAAGGACATCACCTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAACATAGGCTCCGACGAAAAAAGGTTCTCTTGATTTTAGACGATGTTGACAAGCGCGAGCAATTAGAGGCTATTGTTGGAAGATCTGATTGGTTTGGTCCGGGTAGCAGAGTCATCATTACCACTCGGGACAAACATCTGCTAAAATATCATGAGGTTGAAAGAACTTATGAGGTGAAGGTTTTGAATCACAATGCTGCTCTTCAATTGCTTACGTGGAATGCTTTTAAAAGAGAAAAAATTGATCCAATTTATGACGACGTCTTGAATCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTCATAGGTTCCGACTTATTTGGAAAAACTGTAGCAGAATGGGAATCTGCAGTGGAACATTATAAAAGAATTCCGAGTGATGAAATCCTAAAGATTCTAAAAGTAAGCTTTGATGCTTTGGGAGAAGAACAAAAGAATGTGTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATGGACAGAGGTTGATGATATACTCCGTGCTTTTTATGGTAACTGCAAGAAGCATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAGCTTAACTGCTATGATAGTGGTACTGTTGAAATGCACGACCTGATTCAGGACATGGGTAGAGAAATTGAGCGGCAGAGATCACCAGAAGAGCCTTGGAAGTGCAAGAGATTATGGTCACCAAAAGATATATTTCAAGTTTTAAAACACAACACGGGAACTAGTAAAATTGAAATCATATGCCTGGATTTCTCCATATCTGACAAAGAAGAAACAGTAGAATGGAATGAAAACGCCTTCATGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGGAAAATTTTCCAAAGGTCCCAATTATTTTCCCGAAGGTTTGACAGTACTGGAATGGCACAGATATCCTTCAAATTGTCTACCATATAACTTTCATCCGAACAACCTTCTTATATGCAAGTTACCCGACAGTTCCATTACGTCATTTGAGTTGCATGGCCCATCCAAGTTTTGGCATCTAACAGTCTTGAATTTTGACCAGTGCGAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAAGGAACTTTCATTTGATTGGTGTGAGAGTTTAATTGCAGTTGATGACTCAATTGGTTTTCTGAATAAACTTAAAAAATTGAGTGCTTATGGTTGCAGGAAGCTTAGGAGTTTTCCACCTCTCAACTTGACCTCTCTTGAAACACTTCAACTTTCTGGGTGTTCCAGTCTAGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAACATAAAGGCACTTGATTTGGATGGCCTTCCCATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCTGTCGGTTAACCCTGAATAGTTGTGGAATTATTCAGTTACCATGTAGCTTAGCCATGATGCCCGAACTGTCTGTATTCCGTATTGAAAATTGCAACAGGTGGCATTGGGTAGAATCGGAAGAAGGTGAAGAAAAAGTAGGCTCAATGATATCTTCAAAGGAACTTTGGTTTATTGCCATGAACTGCAATCTATGTGATGATTTTTTTTTAACAGGTTCCAAGAGGTTTACTCGTGTAGAATATTTAGATCTATCGGGGAATAATTTCACAATCCTTCCTGAATTCTTCAAAGAATTGCAATTTTTAAGAGCACTTATGGTGAGTGATTGCGAGCATCTTCAGGAAATTAGAGGGCTTCCTCCAAACTTAGAGTATTTTGATGCAAGAAACTGTGCATCCTTGACTTCCTCGACTAAAAGCATGCTTTTAAATCAGGTATTGTCTTTTTTGTTACAGTACAGGATTCGATGA


Protein sequences

Name Description Sequence
R 1 protein R 1 protein [Glycine max].

MAATTRSLASIYDVFLNFRGEDTRYGFTGNLYKALCDKGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGYHFKDGDAYEYKFIGNIVEEVSRKINCAPLHVADYPVGLGSQVIEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALAVYNFIALHFDESCFLQNVREESNKHGLKHFQSILLSKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLEAIVGRSDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPIYDDVLNRVVTYASGLPLALEVIGSDLFGKTVAEWESAVEHYKRIPSDEILKILKVSFDALGEEQKNVFLDIACCFKGYKWTEVDDILRAFYGNCKKHHIGVLVEKSLIKLNCYDSGTVEMHDLIQDMGREIERQRSPEEPWKCKRLWSPKDIFQVLKHNTGTSKIEIICLDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLTVLEWHRYPSNCLPYNFHPNNLLICKLPDSSITSFELHGPSKFWHLTVLNFDQCEFLTQIPDVSDLPNLKELSFDWCESLIAVDDSIGFLNKLKKLSAYGCRKLRSFPPLNLTSLETLQLSGCSSLEYFPEILGEMENIKALDLDGLPIKELPFSFQNLIGLCRLTLNSCGIIQLPCSLAMMPELSVFRIENCNRWHWVESEEGEEKVGSMISSKELWFIAMNCNLCDDFFLTGSKRFTRVEYLDLSGNNFTILPEFFKELQFLRALMVSDCEHLQEIRGLPPNLEYFDARNCASLTSSTKSMLLNQVLSFLLQYRIR

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-153 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAATTRSLASIYDVFLNFRGEDTRYGFTGNLYKALCDKGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGY

ProfileScan: PS50104
IPR000157
10-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SIYDVFLNFRGEDTRYGFTGNLYKALCDKGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADL

HMMSmart: SM00255
IPR000157
11-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLNFRGEDTRYGFTGNLYKALCDKGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADL

Gene3D: G3DSA:3.40.50.10140
11-140 G3DSA:3.40.50.10140

IYDVFLNFRGEDTRYGFTGNLYKALCDKGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKW

HMMPfam: PF01582
IPR000157
14-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLNFRGEDTRYGFTGNLYKALCDKGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALH

HMMPanther: PTHR11017
38-895 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGYHFKDGDAYEYKFIGNIVEEVSRKINCAPLHVADYPVGLGSQVIEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALAVYNFIALHFDESCFLQNVREESNKHGLKHFQSILLSKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLEAIVGRSDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPIYDDVLNRVVTYASGLPLALEVIGSDLFGKTVAEWESAVEHYKRIPSDEILKILKVSFDALGEEQKNVFLDIACCFKGYKWTEVDDILRAFYGNCKKHHIGVLVEKSLIKLNCYDSGTVEMHDLIQDMGREIERQRSPEEPWKCKRLWSPKDIFQVLKHNTGTSKIEIICLDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLTVLEWHRYPSNCLPYNFHPNNLLICKLPDSSITSFELHGPSKFWHLTVLNFDQCEFLTQIPDVSDLPNLKELSFDWCESLIAVDDSIGFLNKLKKLSAYGCRKLRSFPPLNLTSLETLQLSGCSSLEYFPEILGEMENIKALDLDGLPIKELPFSFQNLIGLCRLTLNSCGIIQLPCSLAMMPELSVFRIENCNRWHWVESEEGEEKVGSMISSKELWFIAMNCNLCDDFFLTGSKRFTRVEYLDLSGNNFTILPEFFKELQFLRALMVSDCEHLQEIRGLPPNLEYFDARNCASLTSSTKSMLLNQVLSF

HMMPanther: PTHR11017:SF20
38-895 PTHR11017:SF20,SUBFAMILY NOT NAMED

KGIHTFFDEDKLHSGDDITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGYHFKDGDAYEYKFIGNIVEEVSRKINCAPLHVADYPVGLGSQVIEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALAVYNFIALHFDESCFLQNVREESNKHGLKHFQSILLSKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLEAIVGRSDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPIYDDVLNRVVTYASGLPLALEVIGSDLFGKTVAEWESAVEHYKRIPSDEILKILKVSFDALGEEQKNVFLDIACCFKGYKWTEVDDILRAFYGNCKKHHIGVLVEKSLIKLNCYDSGTVEMHDLIQDMGREIERQRSPEEPWKCKRLWSPKDIFQVLKHNTGTSKIEIICLDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLTVLEWHRYPSNCLPYNFHPNNLLICKLPDSSITSFELHGPSKFWHLTVLNFDQCEFLTQIPDVSDLPNLKELSFDWCESLIAVDDSIGFLNKLKKLSAYGCRKLRSFPPLNLTSLETLQLSGCSSLEYFPEILGEMENIKALDLDGLPIKELPFSFQNLIGLCRLTLNSCGIIQLPCSLAMMPELSVFRIENCNRWHWVESEEGEEKVGSMISSKELWFIAMNCNLCDDFFLTGSKRFTRVEYLDLSGNNFTILPEFFKELQFLRALMVSDCEHLQEIRGLPPNLEYFDARNCASLTSSTKSMLLNQVLSF

superfamily: SSF52540
171-418 SSF52540

EEVSRKINCAPLHVADYPVGLGSQVIEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALAVYNFIALHFDESCFLQNVREESNKHGLKHFQSILLSKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLEAIVGRSDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPIYDDVLNRVVTYASGLPLALEVIGSDLFGKTVAEWESAVEHYKRIPSDEI

HMMPfam: PF00931
IPR002182
196-450 NB-ARC,NBS
NB-ARC

IEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALAVYNFIALHFDESCFLQNVREESNKHGLKHFQSILLSKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLEAIVGRSDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPIYDDVLNRVVTYASGLPLALEVIGSDLFGKTVAEWESAVEHYKRIPSDEILKILKVSFDALGEEQKNVFLDIACCFKGYKWT

HMMSmart: SM00382
IPR003593
209-347 AAA,NBS
AAA+ ATPase domain

LVHIIGIHGMGGLGKTTLALAVYNFIALHFDESCFLQNVREESNKHGLKHFQSILLSKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLEAIVGRSDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVL

Gene3D: G3DSA:3.40.50.300
211-334 G3DSA:3.40.50.300

HIIGIHGMGGLGKTTLALAVYNFIALHFDESCFLQNVREESNKHGLKHFQSILLSKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLEAIVGRSDWFGPGSRVIITTRDKHLLK

FPrintScan: PR00364
IPR000767
212-227 DISEASERSIST
Disease resistance protein

IIGIHGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
288-302 DISEASERSIST
Disease resistance protein

RLRRKKVLLILDDVD

FPrintScan: PR00364
IPR000767
381-395 DISEASERSIST
Disease resistance protein

ASGLPLALEVIGSDL

superfamily: SSF46785
416-526 SSF46785

DEILKILKVSFDALGEEQKNVFLDIACCFKGYKWTEVDDILRAFYGNCKKHHIGVLVEKSLIKLNCYDSGTVEMHDLIQDMGREIERQRSPEEPWKCKRLWSPKDIFQVLK

superfamily: SSF52058
500-902 SSF52058,LRR

IERQRSPEEPWKCKRLWSPKDIFQVLKHNTGTSKIEIICLDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLTVLEWHRYPSNCLPYNFHPNNLLICKLPDSSITSFELHGPSKFWHLTVLNFDQCEFLTQIPDVSDLPNLKELSFDWCESLIAVDDSIGFLNKLKKLSAYGCRKLRSFPPLNLTSLETLQLSGCSSLEYFPEILGEMENIKALDLDGLPIKELPFSFQNLIGLCRLTLNSCGIIQLPCSLAMMPELSVFRIENCNRWHWVESEEGEEKVGSMISSKELWFIAMNCNLCDDFFLTGSKRFTRVEYLDLSGNNFTILPEFFKELQFLRALMVSDCEHLQEIRGLPPNLEYFDARNCASLTSSTKSMLLNQVLSFLLQYRIR

Gene3D: G3DSA:3.80.10.10
551-778 G3DSA:3.80.10.10

EWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLTVLEWHRYPSNCLPYNFHPNNLLICKLPDSSITSFELHGPSKFWHLTVLNFDQCEFLTQIPDVSDLPNLKELSFDWCESLIAVDDSIGFLNKLKKLSAYGCRKLRSFPPLNLTSLETLQLSGCSSLEYFPEILGEMENIKALDLDGLPIKELPFSFQNLIGLCRLTLNSCGIIQLPCSLAMMPELSVFRIENCN

FPrintScan: PR00364
IPR000767
694-710 DISEASERSIST
Disease resistance protein

LNLTSLETLQLSGCSSL

HMMPfam: PF13504
697-714 LRR_7,Leucine rich repeat

TSLETLQLSGCSSLEYFP

Gene3D: G3DSA:3.80.10.10
822-881 G3DSA:3.80.10.10

FTRVEYLDLSGNNFTILPEFFKELQFLRALMVSDCEHLQEIRGLPPNLEYFDARNCASLT

HMMPfam: PF00560
IPR001611
825-844 LRR_1
Leucine-rich repeat

VEYLDLSGNNFTILPEFFKE


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