PRGDB00050752 (R 11)

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R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGCTGCGACAACACGTTCCCTTGCATCCATCTACGATGTGTTCCTCAGCTTCAGAGGTTTAGACACACGCAATGGTTTCACTGGCAACCTCTACAAAGCTCTTGGTGACAGGGGAATCTACACTTTCATTGATGATCAGGAGCTTCCGAGAGGAGACAAAATAACACCTGCACTCTCCAACGCAATTAACGAGTCCAGGATTGCTATTACTGTGCTTTCTGAAAACTATGCTTTTTCCTCATTTTGTTTAGATGAACTTGTAACCATCCTTCACTGCAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTACAAAGTAGATCCTTCTGATGTCAGACACCAAAAAGGTAGTTATGGAGAAACAATGACTAAGCATCAGAAAAGGTTCGAATCTAAGATGGAGAAGCTGCGGGAATGGAGGATGGCTTTGCAACAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGATGGAGATTCATATGAATACAAGTTTATTGGGAATATTGTGGAGGAGGTCTCTAGGAAGATCAATCATGCTTCTTTACATGTTGCGGATTATCCAGTTGATTTAGAGTCACAAGTGATAGAGGTAAGGAAGCTTTTGGATGTAGGATCCGATGATGTTGTCCACATCATAGGGATACATGGGATGCGTGGGTTAGGAAAAACAACCCTTGCTCTAGCTGTTTATAATTTGATTGCTCTCCATTTTGACGAATCATGTTTTCTTCAAAACGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAAAGCATCCTTCTTTTAAAATTACTTGGTGAGAAGGACATCACCTTAACAAGTTGGCAAGATGGAGCTTCAATGATACAACGTAGGCTCCGACAAAAGAAGGTTCTCTTGATTTTAGACGACGCTGACGAGCAAGAGCAATTAAAGGCTATTGTTGGAAGCCCTAATTGCTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATCTGCTAAAATATCATGGCGTTGAAAGAACTTATGAGGTGAAGGTTTTGAATCAGAATGCTGCTCTTCAATTGCTTACGTGGAATGCTTTCAAAAGTGAAAAAATTGATCCATGTTATGAGGACGTCTTGAATCGTGTGGTAGCTTATGCTTCAGGCCTTCCACGGGCTTTGGAAGCCATAGGTTCCAACTTGTTTGGTAAAACAGTAGCAGAATGGGAATATGCTGTGGAACATTACAAAACAATTCCCAGGGATGAAATCCTAGAGAGTCCAAAACTAAGCTTTGATGTTACAATACGGGAAAGACAGGGATATACGTTCACAGTAATAAACAATGCACTGACAACCCTCGGTGGTGTGAGATTCCGTGACAAAATAGGAGCTGAATACGCAAACCAAACACTTGACTCGGCCACCCAATTCATATGGGAGATCTTTCAGCAAAACAACCCTTCTGACAGAAAAAGCGTGCAGAAGGTGAGCTTATTCGTGGATGACATGGACGGGATTGCATACACTAGGAAGAACGAGATTCACGTGAGTGCAAGATATGTTAATGGGTATAGTGGTGGGGATGTGAAAAGAGAGATCACAGGGGTGCTGTTTCATCAAGTTTGCTACGTTTGGCAGTGGAAGGGGAATGGCAAGGCTCCTGGTGGATTAACTGGAGGTATTGCAGATTTTGTGAGGCTGAAGGCAAACTATGCAGCCAGTCATTGGAGAAAACCAGGGCAAGGACAGAAATGGAATGAGGGTTATGAAATTACTGCTCATTTTTTGGATTATTGTGATTCTCTCAAAAGTGGGTTTGTGGGTCAACTTAACCAGTGGATGAGGACTGATTATAGCGATGAGTTCTTCTTTCTGTTACTGGCAAAACCAGTTAATCATCTCTGGCGAGACTATAAGGCCATGTATGGCAATATAGCCTAA


Protein sequences

Name Description Sequence
R 13 protein R 13 protein [Glycine max].

MAATTRSLASIYDVFLSFRGLDTRNGFTGNLYKALGDRGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEKLREWRMALQQVADLSGYHFKDGDSYEYKFIGNIVEEVSRKINHASLHVADYPVDLESQVIEVRKLLDVGSDDVVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQDGASMIQRRLRQKKVLLILDDADEQEQLKAIVGSPNCFGPGSRVIITTRDKHLLKYHGVERTYEVKVLNQNAALQLLTWNAFKSEKIDPCYEDVLNRVVAYASGLPRALEAIGSNLFGKTVAEWEYAVEHYKTIPRDEILESPKLSFDVTIRERQGYTFTVINNALTTLGGVRFRDKIGAEYANQTLDSATQFIWEIFQQNNPSDRKSVQKVSLFVDDMDGIAYTRKNEIHVSARYVNGYSGGDVKREITGVLFHQVCYVWQWKGNGKAPGGLTGGIADFVRLKANYAASHWRKPGQGQKWNEGYEITAHFLDYCDSLKSGFVGQLNQWMRTDYSDEFFFLLLAKPVNHLWRDYKAMYGNIA

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-153 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAATTRSLASIYDVFLSFRGLDTRNGFTGNLYKALGDRGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEKLREWRMALQQVADLSGY

ProfileScan: PS50104
IPR000157
10-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SIYDVFLSFRGLDTRNGFTGNLYKALGDRGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEKLREWRMALQQVADL

HMMSmart: SM00255
IPR000157
11-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLSFRGLDTRNGFTGNLYKALGDRGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEKLREWRMALQQVADL

Gene3D: G3DSA:3.40.50.10140
11-136 G3DSA:3.40.50.10140

IYDVFLSFRGLDTRNGFTGNLYKALGDRGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEK

HMMPfam: PF01582
IPR000157
14-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGLDTRNGFTGNLYKALGDRGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEKLREWRMALQ

HMMPanther: PTHR11017
38-427 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

RGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEKLREWRMALQQVADLSGYHFKDGDSYEYKFIGNIVEEVSRKINHASLHVADYPVDLESQVIEVRKLLDVGSDDVVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQDGASMIQRRLRQKKVLLILDDADEQEQLKAIVGSPNCFGPGSRVIITTRDKHLLKYHGVERTYEVKVLNQNAALQLLTWNAFKSEKIDPCYEDVLNRVVAYASGLPRALEAIGSNLFGKTVAEWEYAVEHYKTIPRDEILESPKLSFD

HMMPanther: PTHR11017:SF20
38-427 PTHR11017:SF20,SUBFAMILY NOT NAMED

RGIYTFIDDQELPRGDKITPALSNAINESRIAITVLSENYAFSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGETMTKHQKRFESKMEKLREWRMALQQVADLSGYHFKDGDSYEYKFIGNIVEEVSRKINHASLHVADYPVDLESQVIEVRKLLDVGSDDVVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQDGASMIQRRLRQKKVLLILDDADEQEQLKAIVGSPNCFGPGSRVIITTRDKHLLKYHGVERTYEVKVLNQNAALQLLTWNAFKSEKIDPCYEDVLNRVVAYASGLPRALEAIGSNLFGKTVAEWEYAVEHYKTIPRDEILESPKLSFD

superfamily: SSF52540
171-418 SSF52540

EEVSRKINHASLHVADYPVDLESQVIEVRKLLDVGSDDVVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQDGASMIQRRLRQKKVLLILDDADEQEQLKAIVGSPNCFGPGSRVIITTRDKHLLKYHGVERTYEVKVLNQNAALQLLTWNAFKSEKIDPCYEDVLNRVVAYASGLPRALEAIGSNLFGKTVAEWEYAVEHYKTIPRDEI

Gene3D: G3DSA:3.40.50.300
189-333 G3DSA:3.40.50.300

VDLESQVIEVRKLLDVGSDDVVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQDGASMIQRRLRQKKVLLILDDADEQEQLKAIVGSPNCFGPGSRVIITTRDKHLL

HMMPfam: PF00931
IPR002182
194-414 NB-ARC,NBS
NB-ARC

QVIEVRKLLDVGSDDVVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQDGASMIQRRLRQKKVLLILDDADEQEQLKAIVGSPNCFGPGSRVIITTRDKHLLKYHGVERTYEVKVLNQNAALQLLTWNAFKSEKIDPCYEDVLNRVVAYASGLPRALEAIGSNLFGKTVAEWEYAVEHYKTIP

HMMSmart: SM00382
IPR003593
209-347 AAA,NBS
AAA+ ATPase domain

VVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQDGASMIQRRLRQKKVLLILDDADEQEQLKAIVGSPNCFGPGSRVIITTRDKHLLKYHGVERTYEVKVL

FPrintScan: PR00364
IPR000767
212-227 DISEASERSIST
Disease resistance protein

IIGIHGMRGLGKTTLA

FPrintScan: PR00364
IPR000767
288-302 DISEASERSIST
Disease resistance protein

RLRQKKVLLILDDAD

FPrintScan: PR00364
IPR000767
381-395 DISEASERSIST
Disease resistance protein

ASGLPRALEAIGSNL

HMMPfam: PF04450
IPR007541
437-633 BSP
Uncharacterised protein family, basic secretory pr

TFTVINNALTTLGGVRFRDKIGAEYANQTLDSATQFIWEIFQQNNPSDRKSVQKVSLFVDDMDGIAYTRKNEIHVSARYVNGYSGGDVKREITGVLFHQVCYVWQWKGNGKAPGGLTGGIADFVRLKANYAASHWRKPGQGQKWNEGYEITAHFLDYCDSLKSGFVGQLNQWMRTDYSDEFFFLLLAKPVNHLWRDY


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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