PRGDB00050753 (R 11)

From PRG Wiki
Jump to: navigation, search
R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGCTGCAACAACACGTTCCCTTCCATTCATCTATGATGTGTTCCTCAGCTTCAGAGGGGAAGACACACGCTATGGTTTCACTGGCAATCTATACAGGGCTCTCTGTGAGAAGGGAATTCATACCTTCTTTGATGAAGAGAAGCTTCACGGTGGAGATGAAATAACACCTGCACTTTCGAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTCAAAACTATGCTTTTTCCTCATTTTGTTTAGATGAACTTGTAACCATCCTTCACTGCAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTACAACGTAGATCCTTCTGATCTCAGACACCAGAAAGGTAGTTATGGAGAAGCAATGATTAAGCATCAGAAAAGGTTCGAATCTAAGATGGAGAAGCTGCAGAAATGGAGGATGGCTTTGAAACAAGTAGCTGACTTGTCTGGCCATCATTTCAAAGATGGAGATGCATATGAATACAAGTTTATTGGGAGCATTGTTGAGGAGGTCTCTAGGAAGATTAATCGAGCTTCTTTACATGTTCTGGATTATCCAGTTGGTCTAGAGTCACAAGTGACAGACTTAATGAAGCTTTTGGATGTTGGATCAGATGATGTTGTCCATATCATAGGGATCCATGGGATGCGTGGGTTAGGAAAAACAACCCTTTCTCTAGCTGTTTATAATTTGATTGCTCTCCATTTTGACGAATCATGTTTTCTTCAAAATGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCCTTCTTTTAAAATTACTTGGTGAGAAGGACATCAACTTAACAAGTTGGCAAGAAGGAGCTTCAATGATTCAACATAGGCTCCGAAGAAAGAAGGTTCTCTTGATTTTAGACGATGCAGACAGGCACGAGCAATTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATCTGCTAAAATATCATGGCATTGAAAGAACTTATGAGGTGAAGGTTTTGAATGACAATGCTGCTCTTCAATTGCTTACTTGGAATGCTTTCAGAAGAGAAAAAATTGATCCAAGTTATGAGCACGTCTTGAATCGTGTGGTAGCTTATGCTTCTGGCCTTCCACTGGCTTTGGAAGTCATAGGTTCCCACTTGTTTGAAAAAACAGTAGCAGAATGGGAATATGCTGTGGAACATTATAGCAGAATTCCCATTGATGAAATCGTAGATATTCTAAAAGTAAGCTTTGATGCTACAAAGCAGGAAACACAGGGATATAAGTTCACAGTAATAAACAATGCACTGACAACCCCCGGTGGTGTGAGATTCCGTGACAAAATAGGAGCTGAATACGCAAACCGAACACTTGAGTTGGCCACCCAATTCGTATGGAGGATCTTTCAGCAAAAAAACCCTTCTGACAGAAAAAATGTGCAGAAGGTGAGCTTAGTCGTGGATGACATGGAGGGTATTGCATACACTATGAACAACGAGATTCACGTGAGTGCAAGATATGTTAATGGGTATAGTGGTGGGGATGTGAAAAGAGAGATCACAGGGGTGCTGTTTCATCAAGTTTGCTACGTTTGGCAGTGGTATGGGAATGGTGAGGCTCCTGGTGGATTAATTGGAGGTATTGCAGATTTTGTGAGGCTGAAGGCAAACTATGCAGCCAGTCATTGGAGAAAACCAGGGCAAGGACAGAGATGGGATGAGGGTTATGATATTACTGCTCATTTTTTGGATTATTGTGATTCTCTCAAAAGTGGGTTTGTGGCTCAACTTAACCAGTTGATGAGGACTGGTTATAGTGATCAGTTCTTCGTTCAGTTACTGGGAAAGCCAGTTGATCAGCTCTGGCGAGACTATAAGGCCCAGTATGGCAATCTAGCCTAA


Protein sequences

Name Description Sequence
R 14 protein R 14 protein [Glycine max].

MAATTRSLPFIYDVFLSFRGEDTRYGFTGNLYRALCEKGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKWRMALKQVADLSGHHFKDGDAYEYKFIGSIVEEVSRKINRASLHVLDYPVGLESQVTDLMKLLDVGSDDVVHIIGIHGMRGLGKTTLSLAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHGIERTYEVKVLNDNAALQLLTWNAFRREKIDPSYEHVLNRVVAYASGLPLALEVIGSHLFEKTVAEWEYAVEHYSRIPIDEIVDILKVSFDATKQETQGYKFTVINNALTTPGGVRFRDKIGAEYANRTLELATQFVWRIFQQKNPSDRKNVQKVSLVVDDMEGIAYTMNNEIHVSARYVNGYSGGDVKREITGVLFHQVCYVWQWYGNGEAPGGLIGGIADFVRLKANYAASHWRKPGQGQRWDEGYDITAHFLDYCDSLKSGFVAQLNQLMRTGYSDQFFVQLLGKPVDQLWRDYKAQYGNLA

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-153 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAATTRSLPFIYDVFLSFRGEDTRYGFTGNLYRALCEKGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKWRMALKQVADLSGH

ProfileScan: PS50104
IPR000157
10-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

FIYDVFLSFRGEDTRYGFTGNLYRALCEKGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKWRMALKQVADL

HMMSmart: SM00255
IPR000157
11-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLSFRGEDTRYGFTGNLYRALCEKGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKWRMALKQVADL

Gene3D: G3DSA:3.40.50.10140
11-140 G3DSA:3.40.50.10140

IYDVFLSFRGEDTRYGFTGNLYRALCEKGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKW

HMMPfam: PF01582
IPR000157
14-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGEDTRYGFTGNLYRALCEKGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKWRMALKQ

HMMPanther: PTHR11017
38-427 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKWRMALKQVADLSGHHFKDGDAYEYKFIGSIVEEVSRKINRASLHVLDYPVGLESQVTDLMKLLDVGSDDVVHIIGIHGMRGLGKTTLSLAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHGIERTYEVKVLNDNAALQLLTWNAFRREKIDPSYEHVLNRVVAYASGLPLALEVIGSHLFEKTVAEWEYAVEHYSRIPIDEIVDILKVSFD

HMMPanther: PTHR11017:SF20
38-427 PTHR11017:SF20,SUBFAMILY NOT NAMED

KGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMIKHQKRFESKMEKLQKWRMALKQVADLSGHHFKDGDAYEYKFIGSIVEEVSRKINRASLHVLDYPVGLESQVTDLMKLLDVGSDDVVHIIGIHGMRGLGKTTLSLAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHGIERTYEVKVLNDNAALQLLTWNAFRREKIDPSYEHVLNRVVAYASGLPLALEVIGSHLFEKTVAEWEYAVEHYSRIPIDEIVDILKVSFD

superfamily: SSF52540
171-418 SSF52540

EEVSRKINRASLHVLDYPVGLESQVTDLMKLLDVGSDDVVHIIGIHGMRGLGKTTLSLAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHGIERTYEVKVLNDNAALQLLTWNAFRREKIDPSYEHVLNRVVAYASGLPLALEVIGSHLFEKTVAEWEYAVEHYSRIPIDEI

Gene3D: G3DSA:3.40.50.300
186-334 G3DSA:3.40.50.300

DYPVGLESQVTDLMKLLDVGSDDVVHIIGIHGMRGLGKTTLSLAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLK

HMMPfam: PF00931
IPR002182
192-433 NB-ARC,NBS
NB-ARC

ESQVTDLMKLLDVGSDDVVHIIGIHGMRGLGKTTLSLAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHGIERTYEVKVLNDNAALQLLTWNAFRREKIDPSYEHVLNRVVAYASGLPLALEVIGSHLFEKTVAEWEYAVEHYSRIPIDEIVDILKVSFDATKQET

HMMSmart: SM00382
IPR003593
209-347 AAA,NBS
AAA+ ATPase domain

VVHIIGIHGMRGLGKTTLSLAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHGIERTYEVKVL

FPrintScan: PR00364
IPR000767
212-227 DISEASERSIST
Disease resistance protein

IIGIHGMRGLGKTTLS

FPrintScan: PR00364
IPR000767
288-302 DISEASERSIST
Disease resistance protein

RLRRKKVLLILDDAD

FPrintScan: PR00364
IPR000767
381-395 DISEASERSIST
Disease resistance protein

ASGLPLALEVIGSHL

HMMPfam: PF04450
IPR007541
437-633 BSP
Uncharacterised protein family, basic secretory pr

KFTVINNALTTPGGVRFRDKIGAEYANRTLELATQFVWRIFQQKNPSDRKNVQKVSLVVDDMEGIAYTMNNEIHVSARYVNGYSGGDVKREITGVLFHQVCYVWQWYGNGEAPGGLIGGIADFVRLKANYAASHWRKPGQGQRWDEGYDITAHFLDYCDSLKSGFVAQLNQLMRTGYSDQFFVQLLGKPVDQLWRDY


List of References



List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox