PRGDB00050756 (R 11)

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R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class TNL
Domain Type LRR, NBS, LRR, TIR, Others
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGCTGCAAAAACACGTTCCCTTGCATCCATCTATGATGTGTTCCTCAGCTTCAGAGGTTTAGACACACGCCATGGTTTCACTGGCAATCTCTACAAAGCTCTTGATGACAGGGGAATCTACACTTCCATTGATGATCAGGAGCTTCCCAGAGGAGACGAAATAACACCTGCACTTTCCAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTCAAAACTATGCTTCTTCCTCGTTTTGTTTAGATGAACTTGTAACCATCCTCCACTGCAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTATAAGGTAGATCCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGAGAAGCAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAAGAAGGAGAAGCTGCAGAAATGGAGGATGGCTTTGAAACAAGTAGCTGACTTGTCTGGCTATCATTTCGAAGATGGAGATGCATATGAATACAAGTTTATTGGGAGTATTGTTGAGGAGGTCTCTAGGAAGATTAGTCGTGCTTCTTTACATGTTGCGGATTATCCAGTTGGTCTAGAGTCACAAGTGACAGAGGTAATGAAGCTTTTGGATGTTGGATCCGATGATCTTGTCCACATCATAGGGATCCATGGAATGGGCGGGTTAGGAAAAACAACACTTGCTCTGGAAGTTTATAATTTGATTGCTCTCCATTTTGATGAATCCTGTTTTCTTCAAAACGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCCTTCTTTCAAAATTACTTGGTGAGAAGGACATCACCTTAACAAGTTGGCAAGAAGGAGCTTCAACGATACAACATAGGCTCCAGAGAAAGAAGGTTCTCTTGATTTTAGATGATGTTAACAAGCGTGAGCAATTAAAGGCTATTGTTGGAAGGCCTGATTGGTTTGGACCCGGTAGCAGAGTCATCATTACCACTCGGGACAAGCATCTGCTAAAATGTCATGAGGTTGAAAGAACTTATGAGGTGAAGGTTTTGAATCACAATGCTGCTCTTCAACTGCTTACTTGGAATGCTTTTAAAAGAGAGAAAATTGATCCAAGTTATGAGGACGTCTTGAATCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAATCATAGGTTCCAATATGTTTGGAAAAAGTGTAGCAGGATGGGAATCTGCGGTGGAACATTATAAAAGAATTCCCAACGATGAAATCCTAGAAATTCTAAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAATGTTTTTCTTGACATTGCTTTTTGCTTAAAAGGATGCAAATTGACAGAGGTTGAACATATGCTATGCAGTCTTTATGATAACTGCATGAAACATCACATTGATGTGTTGGTTGACAAATCTCTCATAAAGGTTAAGCATGGTATAGTTGAAATGCATGACCTAATTCAGGTCGTGGGTAGAGAAATTGAGCGGCAGAGATCACCAGAAGAGCCAGGGAAGCGCAAGAGATTATGGTTACCAAAAGATATAATTCATGTTTTAAAAGACAACACGGGGACTAGTAAAATTGAAATTATATGTCTGGATTTCTCCATATCTTACAAAGAAGAAACAGTAGAATTTAATGAAAACGCCTTCATGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGGCAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAGGTTTGAGAGTACTGGAATGGCACAGATATCCTTCAAATTTTTTACCGTCTAACTTTGATCCGATCAACCTTGTTATATGCAAGTTACCTGACAGTTCCATTAAGTCATTTGAGTTCCATGGCTCATCGAAGAAGTTGGGGCATCTAACAGTTTTGAAGTTTGACCGGTGCAAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAGGGAACTTTCATTTGAAGATTGTGAGAGTTTAGTTGCAGTTGATGACTCAATTGGTTTTCTGAAAAAACTTAAAAAATTGAGTGCTTATGGTTGCAGGAAGCTTACGAGTTTTCCGCCTCTCAACTTGACCTCTCTTGAAACACTTCAACTATCTTCGTGTTCCAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAACATAAGGGAACTTCGTTTGACTGGCCTTTACATAAAAGAATTGCCATTTTCATTTCAAAATCTTACTGGACTCCGTCTGTTAGCCTTGAGTGGCTGTGGAATTGTTCAGTTACCATGTAGCTTAGCCATGATGCCCGAACTGTCTTCATTCTACACTGATTATTGCAACAGGTGGCAATGGATAGAATTGGAAGAAGGTGAAGAAAAATTGGGCTCAATAATATCTTCAAAGGCACAATTGTTTTGTGCCACGAATTGCAATCTATGTGATGATTTTTTCTTAGCAGGTTTCAAGAGGTTTGCTCATGTAGGATATTTAAATCTATCGGGGAATAATTTCACAATCCTTCCTGAATTCTTCAAAGAACTGCAATTTTTAAGAACTCTTGACGTGAGTGATTGCGAGCATCTTCAGGAAATTAGAGGGCTTCCACCAATCTTAGAGTATTTTGATGCAAGAAACTGTGTATCCTTTACTTCCTCGAGTACAAGCATGCTTTTAAATCAAGTATTGTCTTATTTTATTTAA


Protein sequences

Name Description Sequence
R 4 protein R 4 protein [Glycine max].

MAAKTRSLASIYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADLSGYHFEDGDAYEYKFIGSIVEEVSRKISRASLHVADYPVGLESQVTEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALEVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASTIQHRLQRKKVLLILDDVNKREQLKAIVGRPDWFGPGSRVIITTRDKHLLKCHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEIIGSNMFGKSVAGWESAVEHYKRIPNDEILEILKVSFDALGEEQKNVFLDIAFCLKGCKLTEVEHMLCSLYDNCMKHHIDVLVDKSLIKVKHGIVEMHDLIQVVGREIERQRSPEEPGKRKRLWLPKDIIHVLKDNTGTSKIEIICLDFSISYKEETVEFNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNFLPSNFDPINLVICKLPDSSIKSFEFHGSSKKLGHLTVLKFDRCKFLTQIPDVSDLPNLRELSFEDCESLVAVDDSIGFLKKLKKLSAYGCRKLTSFPPLNLTSLETLQLSSCSSLEYFPEILGEMENIRELRLTGLYIKELPFSFQNLTGLRLLALSGCGIVQLPCSLAMMPELSSFYTDYCNRWQWIELEEGEEKLGSIISSKAQLFCATNCNLCDDFFLAGFKRFAHVGYLNLSGNNFTILPEFFKELQFLRTLDVSDCEHLQEIRGLPPILEYFDARNCVSFTSSSTSMLLNQVLSYFI

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-153 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAAKTRSLASIYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADLSGY

ProfileScan: PS50104
IPR000157
10-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SIYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADL

Gene3D: G3DSA:3.40.50.10140
11-140 G3DSA:3.40.50.10140

IYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKW

HMMSmart: SM00255
IPR000157
11-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADL

HMMPfam: PF01582
IPR000157
14-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGLDTRHGFTGNLYKALDDRGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQ

HMMPanther: PTHR11017:SF20
38-877 PTHR11017:SF20,SUBFAMILY NOT NAMED

RGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADLSGYHFEDGDAYEYKFIGSIVEEVSRKISRASLHVADYPVGLESQVTEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALEVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASTIQHRLQRKKVLLILDDVNKREQLKAIVGRPDWFGPGSRVIITTRDKHLLKCHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEIIGSNMFGKSVAGWESAVEHYKRIPNDEILEILKVSFDALGEEQKNVFLDIAFCLKGCKLTEVEHMLCSLYDNCMKHHIDVLVDKSLIKVKHGIVEMHDLIQVVGREIERQRSPEEPGKRKRLWLPKDIIHVLKDNTGTSKIEIICLDFSISYKEETVEFNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNFLPSNFDPINLVICKLPDSSIKSFEFHGSSKKLGHLTVLKFDRCKFLTQIPDVSDLPNLRELSFEDCESLVAVDDSIGFLKKLKKLSAYGCRKLTSFPPLNLTSLETLQLSSCSSLEYFPEILGEMENIRELRLTGLYIKELPFSFQNLTGLRLLALSGCGIVQLPCSLAMMPELSSFYTDYCNRWQWIELEEGEEKLGSIISSKAQLFCATNCNLCDDFFLAGFKRFAHVGYLNLSGNNFTILPEFFKELQFLRTLDVSDCEHLQEIRGLPPILEYFDARNCVS

HMMPanther: PTHR11017
38-877 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

RGIYTSIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADLSGYHFEDGDAYEYKFIGSIVEEVSRKISRASLHVADYPVGLESQVTEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALEVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASTIQHRLQRKKVLLILDDVNKREQLKAIVGRPDWFGPGSRVIITTRDKHLLKCHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEIIGSNMFGKSVAGWESAVEHYKRIPNDEILEILKVSFDALGEEQKNVFLDIAFCLKGCKLTEVEHMLCSLYDNCMKHHIDVLVDKSLIKVKHGIVEMHDLIQVVGREIERQRSPEEPGKRKRLWLPKDIIHVLKDNTGTSKIEIICLDFSISYKEETVEFNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNFLPSNFDPINLVICKLPDSSIKSFEFHGSSKKLGHLTVLKFDRCKFLTQIPDVSDLPNLRELSFEDCESLVAVDDSIGFLKKLKKLSAYGCRKLTSFPPLNLTSLETLQLSSCSSLEYFPEILGEMENIRELRLTGLYIKELPFSFQNLTGLRLLALSGCGIVQLPCSLAMMPELSSFYTDYCNRWQWIELEEGEEKLGSIISSKAQLFCATNCNLCDDFFLAGFKRFAHVGYLNLSGNNFTILPEFFKELQFLRTLDVSDCEHLQEIRGLPPILEYFDARNCVS

superfamily: SSF52540
171-418 SSF52540

EEVSRKISRASLHVADYPVGLESQVTEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALEVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASTIQHRLQRKKVLLILDDVNKREQLKAIVGRPDWFGPGSRVIITTRDKHLLKCHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEIIGSNMFGKSVAGWESAVEHYKRIPNDEI

Gene3D: G3DSA:3.40.50.300
189-334 G3DSA:3.40.50.300

VGLESQVTEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALEVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASTIQHRLQRKKVLLILDDVNKREQLKAIVGRPDWFGPGSRVIITTRDKHLLK

HMMPfam: PF00931
IPR002182
192-452 NB-ARC,NBS
NB-ARC

ESQVTEVMKLLDVGSDDLVHIIGIHGMGGLGKTTLALEVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASTIQHRLQRKKVLLILDDVNKREQLKAIVGRPDWFGPGSRVIITTRDKHLLKCHEVERTYEVKVLNHNAALQLLTWNAFKREKIDPSYEDVLNRVVTYASGLPLALEIIGSNMFGKSVAGWESAVEHYKRIPNDEILEILKVSFDALGEEQKNVFLDIAFCLKGCKLTEV

FPrintScan: PR00364
IPR000767
212-227 DISEASERSIST
Disease resistance protein

IIGIHGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
288-302 DISEASERSIST
Disease resistance protein

RLQRKKVLLILDDVN

FPrintScan: PR00364
IPR000767
381-395 DISEASERSIST
Disease resistance protein

ASGLPLALEIIGSNM

superfamily: SSF46785
416-523 SSF46785

DEILEILKVSFDALGEEQKNVFLDIAFCLKGCKLTEVEHMLCSLYDNCMKHHIDVLVDKSLIKVKHGIVEMHDLIQVVGREIERQRSPEEPGKRKRLWLPKDIIHVLK

superfamily: SSF52058
497-895 SSF52058,LRR

IERQRSPEEPGKRKRLWLPKDIIHVLKDNTGTSKIEIICLDFSISYKEETVEFNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNFLPSNFDPINLVICKLPDSSIKSFEFHGSSKKLGHLTVLKFDRCKFLTQIPDVSDLPNLRELSFEDCESLVAVDDSIGFLKKLKKLSAYGCRKLTSFPPLNLTSLETLQLSSCSSLEYFPEILGEMENIRELRLTGLYIKELPFSFQNLTGLRLLALSGCGIVQLPCSLAMMPELSSFYTDYCNRWQWIELEEGEEKLGSIISSKAQLFCATNCNLCDDFFLAGFKRFAHVGYLNLSGNNFTILPEFFKELQFLRTLDVSDCEHLQEIRGLPPILEYFDARNCVSFTSSSTSMLLNQVLSYFI

Gene3D: G3DSA:3.80.10.10
548-776 G3DSA:3.80.10.10

EFNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNFLPSNFDPINLVICKLPDSSIKSFEFHGSSKKLGHLTVLKFDRCKFLTQIPDVSDLPNLRELSFEDCESLVAVDDSIGFLKKLKKLSAYGCRKLTSFPPLNLTSLETLQLSSCSSLEYFPEILGEMENIRELRLTGLYIKELPFSFQNLTGLRLLALSGCGIVQLPCSLAMMPELSSFYTDYCN

FPrintScan: PR00364
IPR000767
692-708 DISEASERSIST
Disease resistance protein

LNLTSLETLQLSSCSSL

HMMPfam: PF13504
743-758 LRR_7,Leucine rich repeat

GLRLLALSGCGIVQLP

Gene3D: G3DSA:3.80.10.10
824-875 G3DSA:3.80.10.10

GYLNLSGNNFTILPEFFKELQFLRTLDVSDCEHLQEIRGLPPILEYFDARNC

HMMPfam: PF00560
IPR001611
825-842 LRR_1
Leucine-rich repeat

YLNLSGNNFTILPEFFKE


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