PRGDB00050758 (R 11)

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R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class TNL
Domain Type LRR, NBS, LRR, TIR, Others
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGATGCTACAACACGTTACCGTCCATTCATCTACGATGTGTTCCTCAGCTTCATACGGGAAGACACACACCGTGGTTTCACTTTCTATCTCTACAAAGCTCTTAATGACCGGGGAATCTACACTTTCTTTTATGATCAGGAGCTTCCCAGAGAAACCGAAGTAACACCTGGACTTTACAAGGCAATTCTAGCTTCCAGGGTAGCTATTATTGTGCTTTCTGAAAACTATGCTTTTTCCTCATTTTGTTTAGATGAACTTGTAACCATCCTACACTGCGAGAGGGAAGTTATACCAGTCTTTCACAACGTAGATCCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGAGAAGCAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAAGAAGCTGCAGAAATGGAGGATGGCTTTGAAACAAGTAGCTAACTTGTGTGGCTATCATTTCAAAGATGGAGGTTCATATGAATACATGCTTATTGGGCGTATTGTCAAGCAGGTCTCTAGGATGTTTGGTCTTGCTTCTTTACACGTTGCGGATTATCCAGTTGGTCTAGAGTCACAAGTGACAGAGGTAATGAAGCTTTTGGATGTTGGATCCGATGATGTTGTCCACATCATAGGGATCCATGGAATGGGCGGGTTAGGAAAAACAACACTTGCTATGGCAGTTTATAATTTTATTGCTCCCCATTTTGATGAATCCTGTTTTCTTCAAAACGTGAGAGAAGAGTCAAATAAACATGGGTTAAAACACCTTCAAAGCGTCCTTCTTTCAAAATTACTTGGTGAGAAGGACATCACCTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAACATAGGCTCCGACTAAAGAAGATTCTCTTGATTTTAGACGATGTTGACAAGCGTGAGCAATTAAAGGCTATTGTTGGAAAACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAGCATCTGCTAAAATATCATGAGGTTGAAAGAACTTATGAGGTGAATGTTTTGAATCACGATGATGCTTTTCAATTGCTTACTTGGAATGCTTTTAAAAGAGAAAAAATTGATCCAAGTTATAAGGACGTCTTGAATCGTGTAGTAACCTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTCATAGGTTCCAACTTGTATGGAAAAACTGTAGCAGAATGGGAATCTGCCCTTGAAACTTATAAAAGAATTCCCAGTAATGAAATCTTAAAGATTCTAGAAGTAAGCTTTGATGCTTTGGAGGAAGAACAAAAGAATGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATGGACAGAGGTTTATGATATATTCCGTGCTCTTTATAGTAACTGCAAGATGCATCATATTGGGGTGTTGGTTGAAAAATCTCTCTTATTAAAGGTTAGCTGGCGTGATAATGTTGAAATGCACGACCTGATTCAGGACATGGGTAGAGACATTGAGCGGCAGAGATCACCAGAAGAGCCCGGGAAGTGCAAGAGATTATGGTCACCAAAAGATATAATTCAAGTTTTAAAACACAACACGGGAACTAGTAAACTTGAAATCATATGTCTGGATTCCTCCATATCTGACAAAGAAGAAACAGTGGAATGGAATGAAAACGCGTTCATGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGGCAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAGGTTTGAGAGTACTGGAATGGCATAGATATCCTTCAAATTGTTTACCGTCTAACTTTGATCCAATCAACCTTGTTATATGCAAGTTACCTGACAGTTCCATTACATCATTAGAGTTCCATGGCTCATCGAAGTTGGGGCATCTAACAGTTTTGAAGTTTGACAAGTGCAAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAGGGAACTTTCATTTGTAGGGTGTGAGAGTTTAGTTGCAATTGATGACTCAATTGGTTTTCTGAATAAACTTGAAATATTGAATGCTGCTGGTTGCAGGAAGCTTACGAGTTTTCCGCCTCTCAACTTGACCTCTCTTGAAACACTTGAACTTTCTCACTGTTCGAGTCTAGAGTATTTTCCAGAAATATTAGGCGAGATGGAAAACATAACGGCACTTCATTTGGAACGCCTTCCCATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCCGTGAGATAACCCTGAGGAGGTGTAGAATTGTTCGGTTACGATGTAGCTTAGCCATGATGCCCAATCTGTTTCGATTCCAAATTAGAAATTGCAACAGCTGGCAATGGGTAGAATCGGAAGCAGGTGAAGAAAAAGTGGAGGTTAGATATCCAAATGTGTTAGAGTATGAAAAAGAAAAGAAAGAAGAAGGTGTGTTAGAGTTAGAGAGCTCACTCATCAAAGGAAGTGGAATCCATATATTCAGAGAAGAAGGCAGTATGGAGGAAGATATTCGATTTGATGATCCATATCTCAGCAGCTCTGCATCAGAAAGCCCCTCCTTGCTACAAACCATAGCTTTGGGGACACGCAAGTTTTCCATTGCTTTTTTCTTATTTTTTTCATGTTTTTTTATTTTATTATTTTGGTTTCAGTCTTCAAAAAACGACTTAATCCAACTGGTGTTCGCCCTATCTTCATAA


Protein sequences

Name Description Sequence
R 12 protein R 12 protein [Glycine max].

MDATTRYRPFIYDVFLSFIREDTHRGFTFYLYKALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQVANLCGYHFKDGGSYEYMLIGRIVKQVSRMFGLASLHVADYPVGLESQVTEVMKLLDVGSDDVVHIIGIHGMGGLGKTTLAMAVYNFIAPHFDESCFLQNVREESNKHGLKHLQSVLLSKLLGEKDITLTSWQEGASMIQHRLRLKKILLILDDVDKREQLKAIVGKPDWFGPGSRVIITTRDKHLLKYHEVERTYEVNVLNHDDAFQLLTWNAFKREKIDPSYKDVLNRVVTYASGLPLALEVIGSNLYGKTVAEWESALETYKRIPSNEILKILEVSFDALEEEQKNVFLDIACCFKGYKWTEVYDIFRALYSNCKMHHIGVLVEKSLLLKVSWRDNVEMHDLIQDMGRDIERQRSPEEPGKCKRLWSPKDIIQVLKHNTGTSKLEIICLDSSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSLEFHGSSKLGHLTVLKFDKCKFLTQIPDVSDLPNLRELSFVGCESLVAIDDSIGFLNKLEILNAAGCRKLTSFPPLNLTSLETLELSHCSSLEYFPEILGEMENITALHLERLPIKELPFSFQNLIGLREITLRRCRIVRLRCSLAMMPNLFRFQIRNCNSWQWVESEAGEEKVEVRYPNVLEYEKEKKEEGVLELESSLIKGSGIHIFREEGSMEEDIRFDDPYLSSSASESPSLLQTIALGTRKFSIAFFLFFSCFFILLFWFQSSKNDLIQLVFALSS

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
4-148 TIR
Toll/interleukin-1 receptor homology (TIR) domain

TTRYRPFIYDVFLSFIREDTHRGFTFYLYKALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQVANLCGY

Gene3D: G3DSA:3.40.50.10140
10-144 G3DSA:3.40.50.10140

FIYDVFLSFIREDTHRGFTFYLYKALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQVAN

ProfileScan: PS50104
IPR000157
10-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

FIYDVFLSFIREDTHRGFTFYLYKALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQVANL

HMMSmart: SM00255
IPR000157
11-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLSFIREDTHRGFTFYLYKALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQVANL

HMMPfam: PF01582
IPR000157
14-141 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFIREDTHRGFTFYLYKALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQ

HMMPanther: PTHR11017
33-770 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQVANLCGYHFKDGGSYEYMLIGRIVKQVSRMFGLASLHVADYPVGLESQVTEVMKLLDVGSDDVVHIIGIHGMGGLGKTTLAMAVYNFIAPHFDESCFLQNVREESNKHGLKHLQSVLLSKLLGEKDITLTSWQEGASMIQHRLRLKKILLILDDVDKREQLKAIVGKPDWFGPGSRVIITTRDKHLLKYHEVERTYEVNVLNHDDAFQLLTWNAFKREKIDPSYKDVLNRVVTYASGLPLALEVIGSNLYGKTVAEWESALETYKRIPSNEILKILEVSFDALEEEQKNVFLDIACCFKGYKWTEVYDIFRALYSNCKMHHIGVLVEKSLLLKVSWRDNVEMHDLIQDMGRDIERQRSPEEPGKCKRLWSPKDIIQVLKHNTGTSKLEIICLDSSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSLEFHGSSKLGHLTVLKFDKCKFLTQIPDVSDLPNLRELSFVGCESLVAIDDSIGFLNKLEILNAAGCRKLTSFPPLNLTSLETLELSHCSSLEYFPEILGEMENITALHLERLPIKELPFSFQNLIGLREITLRRCRIVRLRCSLAMMPNLFRFQIRN

HMMPanther: PTHR11017:SF20
33-770 PTHR11017:SF20,SUBFAMILY NOT NAMED

KALNDRGIYTFFYDQELPRETEVTPGLYKAILASRVAIIVLSENYAFSSFCLDELVTILHCEREVIPVFHNVDPSDVRHQKGSYGEAMAKHQKRFKAKKLQKWRMALKQVANLCGYHFKDGGSYEYMLIGRIVKQVSRMFGLASLHVADYPVGLESQVTEVMKLLDVGSDDVVHIIGIHGMGGLGKTTLAMAVYNFIAPHFDESCFLQNVREESNKHGLKHLQSVLLSKLLGEKDITLTSWQEGASMIQHRLRLKKILLILDDVDKREQLKAIVGKPDWFGPGSRVIITTRDKHLLKYHEVERTYEVNVLNHDDAFQLLTWNAFKREKIDPSYKDVLNRVVTYASGLPLALEVIGSNLYGKTVAEWESALETYKRIPSNEILKILEVSFDALEEEQKNVFLDIACCFKGYKWTEVYDIFRALYSNCKMHHIGVLVEKSLLLKVSWRDNVEMHDLIQDMGRDIERQRSPEEPGKCKRLWSPKDIIQVLKHNTGTSKLEIICLDSSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSLEFHGSSKLGHLTVLKFDKCKFLTQIPDVSDLPNLRELSFVGCESLVAIDDSIGFLNKLEILNAAGCRKLTSFPPLNLTSLETLELSHCSSLEYFPEILGEMENITALHLERLPIKELPFSFQNLIGLREITLRRCRIVRLRCSLAMMPNLFRFQIRN

superfamily: SSF52540
166-413 SSF52540

KQVSRMFGLASLHVADYPVGLESQVTEVMKLLDVGSDDVVHIIGIHGMGGLGKTTLAMAVYNFIAPHFDESCFLQNVREESNKHGLKHLQSVLLSKLLGEKDITLTSWQEGASMIQHRLRLKKILLILDDVDKREQLKAIVGKPDWFGPGSRVIITTRDKHLLKYHEVERTYEVNVLNHDDAFQLLTWNAFKREKIDPSYKDVLNRVVTYASGLPLALEVIGSNLYGKTVAEWESALETYKRIPSNEI

Gene3D: G3DSA:3.40.50.300
183-329 G3DSA:3.40.50.300

PVGLESQVTEVMKLLDVGSDDVVHIIGIHGMGGLGKTTLAMAVYNFIAPHFDESCFLQNVREESNKHGLKHLQSVLLSKLLGEKDITLTSWQEGASMIQHRLRLKKILLILDDVDKREQLKAIVGKPDWFGPGSRVIITTRDKHLLK

HMMPfam: PF00931
IPR002182
187-446 NB-ARC,NBS
NB-ARC

ESQVTEVMKLLDVGSDDVVHIIGIHGMGGLGKTTLAMAVYNFIAPHFDESCFLQNVREESNKHGLKHLQSVLLSKLLGEKDITLTSWQEGASMIQHRLRLKKILLILDDVDKREQLKAIVGKPDWFGPGSRVIITTRDKHLLKYHEVERTYEVNVLNHDDAFQLLTWNAFKREKIDPSYKDVLNRVVTYASGLPLALEVIGSNLYGKTVAEWESALETYKRIPSNEILKILEVSFDALEEEQKNVFLDIACCFKGYKWTE

HMMSmart: SM00382
IPR003593
204-342 AAA,NBS
AAA+ ATPase domain

VVHIIGIHGMGGLGKTTLAMAVYNFIAPHFDESCFLQNVREESNKHGLKHLQSVLLSKLLGEKDITLTSWQEGASMIQHRLRLKKILLILDDVDKREQLKAIVGKPDWFGPGSRVIITTRDKHLLKYHEVERTYEVNVL

FPrintScan: PR00364
IPR000767
207-222 DISEASERSIST
Disease resistance protein

IIGIHGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
283-297 DISEASERSIST
Disease resistance protein

RLRLKKILLILDDVD

FPrintScan: PR00364
IPR000767
376-390 DISEASERSIST
Disease resistance protein

ASGLPLALEVIGSNL

superfamily: SSF46785
411-520 SSF46785

NEILKILEVSFDALEEEQKNVFLDIACCFKGYKWTEVYDIFRALYSNCKMHHIGVLVEKSLLLKVSWRDNVEMHDLIQDMGRDIERQRSPEEPGKCKRLWSPKDIIQVLK

superfamily: SSF52058
494-779 SSF52058,LRR

IERQRSPEEPGKCKRLWSPKDIIQVLKHNTGTSKLEIICLDSSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSLEFHGSSKLGHLTVLKFDKCKFLTQIPDVSDLPNLRELSFVGCESLVAIDDSIGFLNKLEILNAAGCRKLTSFPPLNLTSLETLELSHCSSLEYFPEILGEMENITALHLERLPIKELPFSFQNLIGLREITLRRCRIVRLRCSLAMMPNLFRFQIRNCNSWQWVES

Gene3D: G3DSA:3.80.10.10
544-772 G3DSA:3.80.10.10

VEWNENAFMKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSLEFHGSSKLGHLTVLKFDKCKFLTQIPDVSDLPNLRELSFVGCESLVAIDDSIGFLNKLEILNAAGCRKLTSFPPLNLTSLETLELSHCSSLEYFPEILGEMENITALHLERLPIKELPFSFQNLIGLREITLRRCRIVRLRCSLAMMPNLFRFQIRNCN

FPrintScan: PR00364
IPR000767
688-704 DISEASERSIST
Disease resistance protein

LNLTSLETLELSHCSSL


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Analyses

Blast

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