PRGDB00050759 (R 11)

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R 11
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 27764534 (AF541963)
Gene Class TNL
Domain Type LRR, NBS, LRR, TIR, Others
Gene Species Glycine max

Comment?

Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence.

DNA Sequence

ATGGCTGCAACAACACGTTCTCCTGCATCCATCTATGATGTGTTCCTCAGCTTCAGAGGTTTAGACACACGCCATGGTTTCACTGGAAATCTCTACAAAGCTCTTGATGACAGAGGAATCTACACTTTCATTGATGATCAGGAGCTTCCAAGAGGAGACGAAATAACACCTGCACTTTCCAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTCAAAACTATGCTTCTTCCTCGTTTTGTTTAGATGAACTTGTAACCGTCCTTCTCTGCAAGAGGAAAGGGCTGTTGGTTATACCGGTCTTTTATAACGTAGATCCTTCTGATGTCAGACAACAGAAAGGTAGTTATGGAGAAGCAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAAGAAGGAGAAACTGCAGAAATGGAGGATGGCTTTGCATCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGATGGAGATGCATATGAATACAAGTTTATCCAGAGTATTGTTGAGCAGGTTTCTAGGGAGATTAATCGTACTCCTTTACATGTTGCGGATTATCCAGTTGGTCTTGGGTCACAAGTGATAGAGGTAAGGAAGCTTTTGGATGTTGGATCCCATGATGTTGTCCACATCATAGGGATCCATGGAATGGGTGGGTTGGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTGATTGCTCTCCATTTTGATGAATCCTGTTTTCTTCAAAACGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCATTCTTTCAAAATTACTTGGTGAGAAGGACATCAACTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAACATAGGCTCCAACGAAAGAAGGTTCTCTTGATTTTAGATGATGTTGATAAGCGCCAGCAGTTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATATTCTAAAATATCATGAGGTTGAAAGAACTTATGAGGTGAAGGTTTTGAATCAGAGTGCTGCTCTTCAATTGCTTAAGTGGAATGCTTTTAAAAGAGAAAAAAATGATCCAAGTTATGAGGACGTCTTGAATCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAATCATAGGTTCCAACTTGTTTGGAAAAACTGTAGCAGAATGGGAATCTGCTATGGAACATTATAAAAGAATTCCTAGTGATGAAATCCTAGAGATTCTAAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAATGTTTTTCTTGACATTGCTTGTTGTTTAAAAGGATGCAAATTGACAGAGGTTGAACATATGCTACGCGGTCTTTATGATAACTGCATGAAACATCACATTGATGTGTTGGTTGACAAATCTCTCACAAAGGTTAGGCATGGTATAGTTGAAATGCATGACCTAATTCAGGACATGGGTAGAGAAATTGAGCGGCAGAGATCACCAGAAGAGCCAGGGAAGCGCAAGAGATTATGGTCACCAAAAGATATAATTCAAGTTTTAAAACACAACACGGGAACTAGTAAAATTGAAATCATATATGTGGATTTCTCCATATCTGACAAAGAAGAAACAGTGGAATGGAATGAAAACGCCTTCATGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGGAAAATTTTCCAAAGGTCCCAATTATTTTCCACAAGGTTTGAGAGTACTGGAATGGCACAGATATCCTTCAAATTGTTTACCGTCTAACTTTGATCCGATCAACCTTGTTATATGCAAGTTACCTGACAGTTCCATGACGTCATTTGAGTTCCATGGCTCATCGAAGTTGGGGCATCTAACAGTTTTGAAGTTTGACTGGTGCAAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAGGGAACTTTCATTTCAATGGTGTGAGAGTTTAGTTGCAGTTGATGACTCAATTGGTTTTCTGAATAAACTTAAAAAATTGAATGCTTATGGTTGCAGGAAGCTTACGAGTTTTCCGCCTCTCCACTTGACCTCTCTTGAAACACTTGAACTTTCTCACTGTTCCAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAACATAGAGAGACTTGATTTGCATGGCCTTCCGATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCCAACAGTTATCCATGTTTGGCTGTGGAATTGTTCAGTTACGATGTAGCTTAGCCATGATGCCCAAACTGTCTGCATTCAAATTTGTAAATTGCAACAGGTGGCAATGGGTAGAATCGGAAGAAGCTGAAGAAAAAGTGGGCTCAATAATATCTTCAGAGGCACGTTTTTGGACACATTCGTTTTCTGCCAAGAATTGCAATCTATGTGATGATTTTTTTTTAACAGGTTTCAAGAAGTTTGCTCATGTAGGATATTTAAATCTATCGAGGAATAATTTCACAATCCTTCCTGAATTCTTCAAAGAATTGCAATTTTTAGGAAGTCTTAACGTGAGTCATTGCAAGCATCTTCAGGAAATTAGAGGGATTCCACAGAACTTAAGGTTATTCAATGCAAGAAACTGTGCATCCTTGACATCCTCGAGTAAAAGCATGCTTTTAAATCAGGTATTGTCTTTTTTATAA


Protein sequences

Name Description Sequence
R 3 protein R 3 protein [Glycine max].

MAATTRSPASIYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGYHFKDGDAYEYKFIQSIVEQVSREINRTPLHVADYPVGLGSQVIEVRKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHILKYHEVERTYEVKVLNQSAALQLLKWNAFKREKNDPSYEDVLNRVVTYASGLPLALEIIGSNLFGKTVAEWESAMEHYKRIPSDEILEILKVSFDALGEEQKNVFLDIACCLKGCKLTEVEHMLRGLYDNCMKHHIDVLVDKSLTKVRHGIVEMHDLIQDMGREIERQRSPEEPGKRKRLWSPKDIIQVLKHNTGTSKIEIIYVDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPQGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSMTSFEFHGSSKLGHLTVLKFDWCKFLTQIPDVSDLPNLRELSFQWCESLVAVDDSIGFLNKLKKLNAYGCRKLTSFPPLHLTSLETLELSHCSSLEYFPEILGEMENIERLDLHGLPIKELPFSFQNLIGLQQLSMFGCGIVQLRCSLAMMPKLSAFKFVNCNRWQWVESEEAEEKVGSIISSEARFWTHSFSAKNCNLCDDFFLTGFKKFAHVGYLNLSRNNFTILPEFFKELQFLGSLNVSHCKHLQEIRGIPQNLRLFNARNCASLTSSSKSMLLNQVLSFL

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-153 TIR
Toll/interleukin-1 receptor homology (TIR) domain

MAATTRSPASIYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGY

ProfileScan: PS50104
IPR000157
10-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SIYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADL

Gene3D: G3DSA:3.40.50.10140
11-140 G3DSA:3.40.50.10140

IYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKW

HMMSmart: SM00255
IPR000157
11-150 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADL

HMMPfam: PF01582
IPR000157
14-145 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALH

HMMPanther: PTHR11017
38-896 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

RGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGYHFKDGDAYEYKFIQSIVEQVSREINRTPLHVADYPVGLGSQVIEVRKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHILKYHEVERTYEVKVLNQSAALQLLKWNAFKREKNDPSYEDVLNRVVTYASGLPLALEIIGSNLFGKTVAEWESAMEHYKRIPSDEILEILKVSFDALGEEQKNVFLDIACCLKGCKLTEVEHMLRGLYDNCMKHHIDVLVDKSLTKVRHGIVEMHDLIQDMGREIERQRSPEEPGKRKRLWSPKDIIQVLKHNTGTSKIEIIYVDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPQGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSMTSFEFHGSSKLGHLTVLKFDWCKFLTQIPDVSDLPNLRELSFQWCESLVAVDDSIGFLNKLKKLNAYGCRKLTSFPPLHLTSLETLELSHCSSLEYFPEILGEMENIERLDLHGLPIKELPFSFQNLIGLQQLSMFGCGIVQLRCSLAMMPKLSAFKFVNCNRWQWVESEEAEEKVGSIISSEARFWTHSFSAKNCNLCDDFFLTGFKKFAHVGYLNLSRNNFTILPEFFKELQFLGSLNVSHCKHLQEIRGIPQNLRLFNARNCASLTSSSKSMLLNQVLSF

HMMPanther: PTHR11017:SF20
38-896 PTHR11017:SF20,SUBFAMILY NOT NAMED

RGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGYHFKDGDAYEYKFIQSIVEQVSREINRTPLHVADYPVGLGSQVIEVRKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHILKYHEVERTYEVKVLNQSAALQLLKWNAFKREKNDPSYEDVLNRVVTYASGLPLALEIIGSNLFGKTVAEWESAMEHYKRIPSDEILEILKVSFDALGEEQKNVFLDIACCLKGCKLTEVEHMLRGLYDNCMKHHIDVLVDKSLTKVRHGIVEMHDLIQDMGREIERQRSPEEPGKRKRLWSPKDIIQVLKHNTGTSKIEIIYVDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPQGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSMTSFEFHGSSKLGHLTVLKFDWCKFLTQIPDVSDLPNLRELSFQWCESLVAVDDSIGFLNKLKKLNAYGCRKLTSFPPLHLTSLETLELSHCSSLEYFPEILGEMENIERLDLHGLPIKELPFSFQNLIGLQQLSMFGCGIVQLRCSLAMMPKLSAFKFVNCNRWQWVESEEAEEKVGSIISSEARFWTHSFSAKNCNLCDDFFLTGFKKFAHVGYLNLSRNNFTILPEFFKELQFLGSLNVSHCKHLQEIRGIPQNLRLFNARNCASLTSSSKSMLLNQVLSF

superfamily: SSF52540
171-418 SSF52540

EQVSREINRTPLHVADYPVGLGSQVIEVRKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHILKYHEVERTYEVKVLNQSAALQLLKWNAFKREKNDPSYEDVLNRVVTYASGLPLALEIIGSNLFGKTVAEWESAMEHYKRIPSDEI

HMMPfam: PF00931
IPR002182
198-451 NB-ARC,NBS
NB-ARC

VRKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHILKYHEVERTYEVKVLNQSAALQLLKWNAFKREKNDPSYEDVLNRVVTYASGLPLALEIIGSNLFGKTVAEWESAMEHYKRIPSDEILEILKVSFDALGEEQKNVFLDIACCLKGCKLTE

HMMSmart: SM00382
IPR003593
209-347 AAA,NBS
AAA+ ATPase domain

VVHIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHILKYHEVERTYEVKVL

Gene3D: G3DSA:3.40.50.300
211-329 G3DSA:3.40.50.300

HIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRD

FPrintScan: PR00364
IPR000767
212-227 DISEASERSIST
Disease resistance protein

IIGIHGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
288-302 DISEASERSIST
Disease resistance protein

RLQRKKVLLILDDVD

FPrintScan: PR00364
IPR000767
381-395 DISEASERSIST
Disease resistance protein

ASGLPLALEIIGSNL

superfamily: SSF46785
416-523 SSF46785

DEILEILKVSFDALGEEQKNVFLDIACCLKGCKLTEVEHMLRGLYDNCMKHHIDVLVDKSLTKVRHGIVEMHDLIQDMGREIERQRSPEEPGKRKRLWSPKDIIQVLK

superfamily: SSF52058
497-897 SSF52058,LRR

IERQRSPEEPGKRKRLWSPKDIIQVLKHNTGTSKIEIIYVDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPQGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSMTSFEFHGSSKLGHLTVLKFDWCKFLTQIPDVSDLPNLRELSFQWCESLVAVDDSIGFLNKLKKLNAYGCRKLTSFPPLHLTSLETLELSHCSSLEYFPEILGEMENIERLDLHGLPIKELPFSFQNLIGLQQLSMFGCGIVQLRCSLAMMPKLSAFKFVNCNRWQWVESEEAEEKVGSIISSEARFWTHSFSAKNCNLCDDFFLTGFKKFAHVGYLNLSRNNFTILPEFFKELQFLGSLNVSHCKHLQEIRGIPQNLRLFNARNCASLTSSSKSMLLNQVLSFL

Gene3D: G3DSA:3.80.10.10
547-773 G3DSA:3.80.10.10

VEWNENAFMKMENLKILIIRNGKFSKGPNYFPQGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSMTSFEFHGSSKLGHLTVLKFDWCKFLTQIPDVSDLPNLRELSFQWCESLVAVDDSIGFLNKLKKLNAYGCRKLTSFPPLHLTSLETLELSHCSSLEYFPEILGEMENIERLDLHGLPIKELPFSFQNLIGLQQLSMFGCGIVQLRCSLAMMPKLSAFKFVN

FPrintScan: PR00364
IPR000767
691-707 DISEASERSIST
Disease resistance protein

LHLTSLETLELSHCSSL

Gene3D: G3DSA:3.80.10.10
817-878 G3DSA:3.80.10.10

LTGFKKFAHVGYLNLSRNNFTILPEFFKELQFLGSLNVSHCKHLQEIRGIPQNLRLFNARNC

HMMPfam: PF00560
IPR001611
828-845 LRR_1
Leucine-rich repeat

YLNLSRNNFTILPEFFKE


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