PRGDB00050871 (YK28)

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YK28
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7243669 (AF230513)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa subsp. japonica serine/threonine protein kinase (YK28) gene, partial cds.

DNA Sequence

TTCGGGTCGGTGTATCGGGGAGTGTTGAGGGACTTGACTGTTGTAGCAGTGAAAAGGCTTGATGGTGCCCGTCAAGGCGAGAAGCAGTTCAGGGCTGAGGTGAGCTCAATCGGATTGATCCAACATATCAACCTAGTCAAGTTGATTGGTTTCTGCTGCCAAGGTGACAAGAGGCTACTTGTTTATGAACACATGTTAAACGGTTCTCTTGATACCCATCTGTTTCAGAGCAATGCTACTATACTGACGTGGAGCACGAGGTATCAAATAGCCATAGGAGTTGCTAGAGGACTTTCCTACTTGCATCAGAGTTGCCACGAATGCATCATACACTGTGATATTAAGCCACAAAACATACTTCTCGACGAATCATTTACTCCTAAAATTGCAGATTTTGGGATGGCAGTATTTGTAGGAAGGGATTTTAGCAGAGTTCTGACTACATTTAGAGGAACAGTTGGATATCTTGCCCCGGAGTGGATTAGTGGTGTCGCAATTACACCAAAAGTTGACGTCTACAGCTTTGGCATA


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)].

FGSVYRGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGI

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420:SF442
1-177 PTHR24420:SF442,SUBFAMILY NOT NAMED

FGSVYRGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGI

HMMPanther: PTHR24420
1-177 PTHR24420,FAMILY NOT NAMED

FGSVYRGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGI

HMMPfam: PF00069
IPR000719
1-177 Pkinase,Ser-thr
Protein kinase, catalytic domain

FGSVYRGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGI

Gene3D: G3DSA:3.30.200.20
1-60 G3DSA:3.30.200.20

FGSVYRGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLL

superfamily: SSF56112
IPR011009
1-177 Kinase_like
Protein kinase-like domain

FGSVYRGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGI

ProfileScan: PS50011
IPR000719
1-177 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FGSVYRGVLRDLTVVAVKRLDGARQGEKQFRAEVSSIGLIQHINLVKLIGFCCQGDKRLLVYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGI

Gene3D: G3DSA:1.10.510.10
61-177 G3DSA:1.10.510.10

VYEHMLNGSLDTHLFQSNATILTWSTRYQIAIGVARGLSYLHQSCHECIIHCDIKPQNILLDESFTPKIADFGMAVFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGI

PatternScan: PS00108
IPR008271
109-121 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHCDIKPQNILL






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Analyses

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