PRGDB00050875 (YK20)

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YK20
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7243661 (AF230509)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa subsp. japonica serine/threonine protein kinase (YK20) gene, partial cds.

DNA Sequence

TTCGGGTCGGTGTACAGGGGACAGTTAGGTGAGGAGAAGATTGCAGTGAAGTGTTTGGATCAAGCAAGTCAAGGAAAAAGGGAATTCTTTGCAGAAGTCGAGACAATTGGAAGAATTCATCACATCAATTTGGTCAGGTTGATTGGCTTCTGTCTAGAGAAATCACACAGGCTCCTAGTGTATGAGTTTATGCCCAAGGGATCACTAGACCAATGGATCTACTACAAAGACAGCAATGATACTCTTGACTGGCGCACACGGCGCAATATCATCACCGACATTGCTAGGGCCCTTGCTTATCTTCATGAGGAGTGCACACATAAGATTGCTCATCTGGATATCAAACCACAAAATATCCTCTTAGATGATAACTTCAATGCCAAAGTTTGTGATTTTGGATTGTCTAGGCTGATACATAGGGACCAGAGTCACGTGACAACCAGAATGAGAGGAACACCTGGATATTTGTCCCCTGAATGGTTAACATCTCATATCACCGAGAAGGTTGACATCTACAGTTACGGCATA


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)].

FGSVYRGQLGEEKIAVKCLDQASQGKREFFAEVETIGRIHHINLVRLIGFCLEKSHRLLVYEFMPKGSLDQWIYYKDSNDTLDWRTRRNIITDIARALAYLHEECTHKIAHLDIKPQNILLDDNFNAKVCDFGLSRLIHRDQSHVTTRMRGTPGYLSPEWLTSHITEKVDIYSYGI

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-176 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FGSVYRGQLGEEKIAVKCLDQASQGKREFFAEVETIGRIHHINLVRLIGFCLEKSHRLLVYEFMPKGSLDQWIYYKDSNDTLDWRTRRNIITDIARALAYLHEECTHKIAHLDIKPQNILLDDNFNAKVCDFGLSRLIHRDQSHVTTRMRGTPGYLSPEWLTSHITEKVDIYSYGI

superfamily: SSF56112
IPR011009
1-176 Kinase_like
Protein kinase-like domain

FGSVYRGQLGEEKIAVKCLDQASQGKREFFAEVETIGRIHHINLVRLIGFCLEKSHRLLVYEFMPKGSLDQWIYYKDSNDTLDWRTRRNIITDIARALAYLHEECTHKIAHLDIKPQNILLDDNFNAKVCDFGLSRLIHRDQSHVTTRMRGTPGYLSPEWLTSHITEKVDIYSYGI

HMMPanther: PTHR24420:SF442
1-176 PTHR24420:SF442,SUBFAMILY NOT NAMED

FGSVYRGQLGEEKIAVKCLDQASQGKREFFAEVETIGRIHHINLVRLIGFCLEKSHRLLVYEFMPKGSLDQWIYYKDSNDTLDWRTRRNIITDIARALAYLHEECTHKIAHLDIKPQNILLDDNFNAKVCDFGLSRLIHRDQSHVTTRMRGTPGYLSPEWLTSHITEKVDIYSYGI

HMMPanther: PTHR24420
1-176 PTHR24420,FAMILY NOT NAMED

FGSVYRGQLGEEKIAVKCLDQASQGKREFFAEVETIGRIHHINLVRLIGFCLEKSHRLLVYEFMPKGSLDQWIYYKDSNDTLDWRTRRNIITDIARALAYLHEECTHKIAHLDIKPQNILLDDNFNAKVCDFGLSRLIHRDQSHVTTRMRGTPGYLSPEWLTSHITEKVDIYSYGI

HMMPfam: PF00069
IPR000719
1-176 Pkinase,Ser-thr
Protein kinase, catalytic domain

FGSVYRGQLGEEKIAVKCLDQASQGKREFFAEVETIGRIHHINLVRLIGFCLEKSHRLLVYEFMPKGSLDQWIYYKDSNDTLDWRTRRNIITDIARALAYLHEECTHKIAHLDIKPQNILLDDNFNAKVCDFGLSRLIHRDQSHVTTRMRGTPGYLSPEWLTSHITEKVDIYSYGI

Gene3D: G3DSA:3.30.200.20
1-51 G3DSA:3.30.200.20

FGSVYRGQLGEEKIAVKCLDQASQGKREFFAEVETIGRIHHINLVRLIGFC

Gene3D: G3DSA:1.10.510.10
52-176 G3DSA:1.10.510.10

LEKSHRLLVYEFMPKGSLDQWIYYKDSNDTLDWRTRRNIITDIARALAYLHEECTHKIAHLDIKPQNILLDDNFNAKVCDFGLSRLIHRDQSHVTTRMRGTPGYLSPEWLTSHITEKVDIYSYGI

PatternScan: PS00108
IPR008271
109-121 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IAHLDIKPQNILL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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