PRGDB00050876 (YK19)

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YK19
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7243659 (AF230508)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa subsp. japonica serine/threonine protein kinase (YK19) gene, partial cds.

DNA Sequence

TTTGGGTCGGTGTATCAGGGTACAACGCGGTTCAAGAATTCAGTATCTGACGTAGCTGTGAAGGTTTTCGATCTTGAGCAATCTGGTTCTTCTAAGAGTTTTGTAGCAGAGTGTAAGGCACTAAGCAAAATTCAACACCGGAACTTGGTTGGTGTCATAACTTGCTGCTCTTGCCCTAATTTGAACCAAAATGACTTCAAAGCCCTTGTGTTCGAGTTCATGCCTTATGGTAGTCTTGATAGGTGGATACATCCAGACATAGATCCATCAAGTCCAGTCGAAGTTCTTACGTTAATGCAGAGATTGAATATTGCTCTTGATATTGGTGCTGCACTGGACTATTTGCACAACAACTGCCAGCCAGCAATAGTTCATTGCGACTTAAAGCCCAGCAACATTCTTCTTGGGGATGGCATGGTTGCTCATGTTGGGGATTTTGGCCTTGCAAAGATTCTTACAGATCCAGAAGGTGAACAACTGATCAATTCAAAGAGTTCTGTGGGGATAATGGGTACAATTGGATATGTTGCTCCAGGTAAATCACATTTTTGCTGCAGTAGTTATTGTGCTTTGAC


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)].

FGSVYQGTTRFKNSVSDVAVKVFDLEQSGSSKSFVAECKALSKIQHRNLVGVITCCSCPNLNQNDFKALVFEFMPYGSLDRWIHPDIDPSSPVEVLTLMQRLNIALDIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKSSVGIMGTIGYVAPGKSHFCCSSYCALT

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-192 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FGSVYQGTTRFKNSVSDVAVKVFDLEQSGSSKSFVAECKALSKIQHRNLVGVITCCSCPNLNQNDFKALVFEFMPYGSLDRWIHPDIDPSSPVEVLTLMQRLNIALDIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKSSVGIMGTIGYVAPGKSHFCCSSYCALT

Gene3D: G3DSA:3.30.200.20
1-45 G3DSA:3.30.200.20

FGSVYQGTTRFKNSVSDVAVKVFDLEQSGSSKSFVAECKALSKIQ

HMMPanther: PTHR24420:SF474
1-178 PTHR24420:SF474,SUBFAMILY NOT NAMED

FGSVYQGTTRFKNSVSDVAVKVFDLEQSGSSKSFVAECKALSKIQHRNLVGVITCCSCPNLNQNDFKALVFEFMPYGSLDRWIHPDIDPSSPVEVLTLMQRLNIALDIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKSSVGIMGTIGYVAP

HMMPanther: PTHR24420
1-178 PTHR24420,FAMILY NOT NAMED

FGSVYQGTTRFKNSVSDVAVKVFDLEQSGSSKSFVAECKALSKIQHRNLVGVITCCSCPNLNQNDFKALVFEFMPYGSLDRWIHPDIDPSSPVEVLTLMQRLNIALDIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKSSVGIMGTIGYVAP

superfamily: SSF56112
IPR011009
1-178 Kinase_like
Protein kinase-like domain

FGSVYQGTTRFKNSVSDVAVKVFDLEQSGSSKSFVAECKALSKIQHRNLVGVITCCSCPNLNQNDFKALVFEFMPYGSLDRWIHPDIDPSSPVEVLTLMQRLNIALDIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKSSVGIMGTIGYVAP

HMMPfam: PF00069
IPR000719
1-178 Pkinase,Ser-thr
Protein kinase, catalytic domain

FGSVYQGTTRFKNSVSDVAVKVFDLEQSGSSKSFVAECKALSKIQHRNLVGVITCCSCPNLNQNDFKALVFEFMPYGSLDRWIHPDIDPSSPVEVLTLMQRLNIALDIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKSSVGIMGTIGYVAP

Gene3D: G3DSA:1.10.510.10
46-178 G3DSA:1.10.510.10

HRNLVGVITCCSCPNLNQNDFKALVFEFMPYGSLDRWIHPDIDPSSPVEVLTLMQRLNIALDIGAALDYLHNNCQPAIVHCDLKPSNILLGDGMVAHVGDFGLAKILTDPEGEQLINSKSSVGIMGTIGYVAP

PatternScan: PS00108
IPR008271
123-135 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IVHCDLKPSNILL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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