PRGDB00050877 (YK18)

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YK18
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7243657 (AF230507)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa subsp. japonica serine/threonine protein kinase (YK18) gene, partial cds.

DNA Sequence

TTTGGGTCGGTGTACAGGGGTCGCTAAGTGACTCGACTATCATAGCAGTGAAAAGGCTTGATGGTGCTCGCCAAGGAGAGAAGCAATTCAGAGCTGAAGTGAGTTCCATAGGGATAATCCAGCATGTAAACTTGGTTAAACTGATTGGGTTTTGCTGCGAAGGTGACAGGAGGTTACTTGTTTATGAACACATGCCAAAGAGTTCTCTTGATGCCCATCTCTTCCCAAGCAGTGGTGCAGTTTTGAGTTGGACTATTAGGTACCAAATAGCCCTCGGAGTTGCAAGAGGACTAGCTTATTTGCATTCTAGTTGCCGAGACTGCATTATACACTGTGATATCAAACCAGAGAACATACTTCTTGATTCATCTTTCACTCCTAAAGTTGCAGACTTTGGAATGGCAAAGTTTCTCGGAAGGGATTTCAGTCATGTCGTAACTACAATGAGAGGAACCATAGGATATCTTGCTCCTGAGTGGATAAGCGGAACAGCTATCACATCAAAAGTGGACATCTACAGCTACGGCATA


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)].

WVGVQGSLSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDIYSYGI

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-176 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

WVGVQGSLSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDIYSYGI

Gene3D: G3DSA:3.30.200.20
5-52 G3DSA:3.30.200.20

QGSLSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCC

HMMPanther: PTHR24420
6-176 PTHR24420,FAMILY NOT NAMED

GSLSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDIYSYGI

HMMPanther: PTHR24420:SF442
6-176 PTHR24420:SF442,SUBFAMILY NOT NAMED

GSLSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDIYSYGI

superfamily: SSF56112
IPR011009
8-176 Kinase_like
Protein kinase-like domain

LSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDIYSYGI

HMMPfam: PF00069
IPR000719
9-176 Pkinase,Ser-thr
Protein kinase, catalytic domain

SDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDIYSYGI

Gene3D: G3DSA:1.10.510.10
53-176 G3DSA:1.10.510.10

EGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDIYSYGI

PatternScan: PS00108
IPR008271
108-120 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHCDIKPENILL






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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