PRGDB00050878 (YK15)

From PRG Wiki
Jump to: navigation, search
YK15
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7243655 (AF230506)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa subsp. japonica serine/threonine protein kinase (YK15) gene, partial cds.

DNA Sequence

TTCGGGTCGGTGTACCGGGGAAAATTAGCGAAGAGAAAGTTGCAGTTAAACGGCTGGAAAGTGCTAGACAAGGAAAGAAAGAATTCTTGGCAGAGGTCGAGACTATTGGCAGCATTGAGCACATCAATCTTGTCAGACTGATCGGAGTTTGTGTAGAGAAGTCAAATAGGCTTCTAGTATATGAATATATGTCAAGAGGATCACTTGATAGGTGGATATATTATCACCATAACAATGCGCCTCTTGATTGGAGCACGAGGTGTAGGATAATTCTCGATATTGCCAAGGGTTTATGTTATCTTCATGAGGAATGCAGGCGAAAAATTGCTCATTTGGATATCAAACCACAGAATATTCTATTAGATGATAACTTCAATGCGAAATTGGCAGATTTTGGACTTTCTAAGCTAATAGATAGAGATCAAAGCAAGGTGATGACTGTGATGAGAGGCACACCTGGATATCTGGCACCTGAATGGTTAACATCGCAAATCACTGAAAAAGTTGACGTCTACAGTTATGGCATA


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)].

RVGVPGKISEEKVAVKRLESARQGKKEFLAEVETIGSIEHINLVRLIGVCVEKSNRLLVYEYMSRGSLDRWIYYHHNNAPLDWSTRCRIILDIAKGLCYLHEECRRKIAHLDIKPQNILLDDNFNAKLADFGLSKLIDRDQSKVMTVMRGTPGYLAPEWLTSQITEKVDVYSYGI

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-175 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

RVGVPGKISEEKVAVKRLESARQGKKEFLAEVETIGSIEHINLVRLIGVCVEKSNRLLVYEYMSRGSLDRWIYYHHNNAPLDWSTRCRIILDIAKGLCYLHEECRRKIAHLDIKPQNILLDDNFNAKLADFGLSKLIDRDQSKVMTVMRGTPGYLAPEWLTSQITEKVDVYSYGI

HMMPanther: PTHR24420:SF442
6-175 PTHR24420:SF442,SUBFAMILY NOT NAMED

GKISEEKVAVKRLESARQGKKEFLAEVETIGSIEHINLVRLIGVCVEKSNRLLVYEYMSRGSLDRWIYYHHNNAPLDWSTRCRIILDIAKGLCYLHEECRRKIAHLDIKPQNILLDDNFNAKLADFGLSKLIDRDQSKVMTVMRGTPGYLAPEWLTSQITEKVDVYSYGI

HMMPanther: PTHR24420
6-175 PTHR24420,FAMILY NOT NAMED

GKISEEKVAVKRLESARQGKKEFLAEVETIGSIEHINLVRLIGVCVEKSNRLLVYEYMSRGSLDRWIYYHHNNAPLDWSTRCRIILDIAKGLCYLHEECRRKIAHLDIKPQNILLDDNFNAKLADFGLSKLIDRDQSKVMTVMRGTPGYLAPEWLTSQITEKVDVYSYGI

superfamily: SSF56112
IPR011009
6-175 Kinase_like
Protein kinase-like domain

GKISEEKVAVKRLESARQGKKEFLAEVETIGSIEHINLVRLIGVCVEKSNRLLVYEYMSRGSLDRWIYYHHNNAPLDWSTRCRIILDIAKGLCYLHEECRRKIAHLDIKPQNILLDDNFNAKLADFGLSKLIDRDQSKVMTVMRGTPGYLAPEWLTSQITEKVDVYSYGI

HMMPfam: PF00069
IPR000719
9-175 Pkinase,Ser-thr
Protein kinase, catalytic domain

SEEKVAVKRLESARQGKKEFLAEVETIGSIEHINLVRLIGVCVEKSNRLLVYEYMSRGSLDRWIYYHHNNAPLDWSTRCRIILDIAKGLCYLHEECRRKIAHLDIKPQNILLDDNFNAKLADFGLSKLIDRDQSKVMTVMRGTPGYLAPEWLTSQITEKVDVYSYGI

Gene3D: G3DSA:3.30.200.20
10-50 G3DSA:3.30.200.20

EEKVAVKRLESARQGKKEFLAEVETIGSIEHINLVRLIGVC

Gene3D: G3DSA:1.10.510.10
51-175 G3DSA:1.10.510.10

VEKSNRLLVYEYMSRGSLDRWIYYHHNNAPLDWSTRCRIILDIAKGLCYLHEECRRKIAHLDIKPQNILLDDNFNAKLADFGLSKLIDRDQSKVMTVMRGTPGYLAPEWLTSQITEKVDVYSYGI

PatternScan: PS00108
IPR008271
108-120 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IAHLDIKPQNILL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox