PRGDB00050883 (YK1)

From PRG Wiki
Jump to: navigation, search
YK1
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7243645 (AF230501)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa subsp. japonica serine/threonine protein kinase (YK1) gene, partial cds.

DNA Sequence

TTTGGGGAGGTGTATCGGGGGGAGATTGATGGTGGAGTGACCAAGGTGGCTATCAAGCGTGGGAATCCACTGTCTGAGCAGGGTGTGCATGAGTTCCAAACCGAGATTGAGATGCTGTCGAAGCTCCGCCACCGTCATCTTGTGTCACTGATTGGTTACTGTGAGGAGAAGAATGAGATGATCCTGGTCTATGACTACATGGCTCATGGAACTCTTCGTGAGCACCTGTACAAGACCAAGAATGCACCACTTACATGGAGGCAGCGCTTGGAGATCTGCATTGGTGCTGCCCGTGGGCTTCACTACCTTCACACTGGTGCGAAGCACACAATCATCCACCGTGATGTGAAGACAACAAATATCCTCCTGGATGAGAAGTGGGTCGCGAAGGTTTCAGATTTTGGTCTGTCAAAGACTGGGCCATCGATGGATCACACACATGTGAGCACAGTTGTCAAGGGAAGTTTTGGCTACCTTGACCCTGAATACTTCCGCAGGCAGCAGCTCACTGAGAAATCTGACATCTATTCCTTCGGCATA


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)].

FGEVYRGEIDGGVTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHLYKTKNAPLTWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGI

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-180 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FGEVYRGEIDGGVTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHLYKTKNAPLTWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGI

HMMPanther: PTHR24420
1-180 PTHR24420,FAMILY NOT NAMED

FGEVYRGEIDGGVTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHLYKTKNAPLTWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGI

HMMPanther: PTHR24420:SF418
1-180 PTHR24420:SF418,SUBFAMILY NOT NAMED

FGEVYRGEIDGGVTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHLYKTKNAPLTWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGI

Gene3D: G3DSA:3.30.200.20
1-52 G3DSA:3.30.200.20

FGEVYRGEIDGGVTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIG

superfamily: SSF56112
IPR011009
1-180 Kinase_like
Protein kinase-like domain

FGEVYRGEIDGGVTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHLYKTKNAPLTWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGI

HMMPfam: PF07714
IPR001245
1-180 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

FGEVYRGEIDGGVTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEEKNEMILVYDYMAHGTLREHLYKTKNAPLTWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGI

Gene3D: G3DSA:1.10.510.10
53-180 G3DSA:1.10.510.10

YCEEKNEMILVYDYMAHGTLREHLYKTKNAPLTWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPSMDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGI

PatternScan: PS00108
IPR008271
111-123 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHRDVKTTNILL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox