PRGDB00050885 (YK10)

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YK10
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7243641 (AF230499)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa subsp. japonica serine/threonine protein kinase (YK10) gene, partial cds.

DNA Sequence

TTTGGGTCGGTGTACCGGGGCTTCTGAAGGGCAACATGGAAGTAGCTGTCAAAAGATGCATGACAATCAATGAGCATCAGAAGAAAGAATTTGGTAAAGAAATGCTAATTTTATCTCAAATCAACCACAAAAATATTGTCAAACTATTAGGTTGTTGTCTTGAAGTAGAGGTCCCTATGCTAGTATACGAGTTCATCCCGAACGGCACGCTTTTCGATCTCATCCATGGTAACCATGGTCAGCAGATCTCCCTGGCCACTCGTCTTCAGATTGCCCATGAGTCAGCTGAGGCACTTACTTATCTCCATTCATGTGCTTCACCACCAATCCTTCATGGTGACATCAAATCATCCAACATCCTCCTTGATAGAAACCTGATAGCAAAGGTTTCAGATTTTGGTGCTTCCATTCTAGCACCAACAGATGAGTCACAGTTTGTCACACTGGTTCAAGGAACTTGTGGATATCTTGACCCAGAGTACATGCAGTTGTGTCTATTAACAGATAAGAGTGACATCTATTCCTACGGCAT


Protein sequences

Name Description Sequence
serine/threonine protein kinase serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)].

WVGVPGLLKGNMEVAVKRCMTINEHQKKEFGKEMLILSQINHKNIVKLLGCCLEVEVPMLVYEFIPNGTLFDLIHGNHGQQISLATRLQIAHESAEALTYLHSCASPPILHGDIKSSNILLDRNLIAKVSDFGASILAPTDESQFVTLVQGTCGYLDPEYMQLCLLTDKSDIYSYG

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-176 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

WVGVPGLLKGNMEVAVKRCMTINEHQKKEFGKEMLILSQINHKNIVKLLGCCLEVEVPMLVYEFIPNGTLFDLIHGNHGQQISLATRLQIAHESAEALTYLHSCASPPILHGDIKSSNILLDRNLIAKVSDFGASILAPTDESQFVTLVQGTCGYLDPEYMQLCLLTDKSDIYSYG

HMMPanther: PTHR24420
6-176 PTHR24420,FAMILY NOT NAMED

GLLKGNMEVAVKRCMTINEHQKKEFGKEMLILSQINHKNIVKLLGCCLEVEVPMLVYEFIPNGTLFDLIHGNHGQQISLATRLQIAHESAEALTYLHSCASPPILHGDIKSSNILLDRNLIAKVSDFGASILAPTDESQFVTLVQGTCGYLDPEYMQLCLLTDKSDIYSYG

HMMPanther: PTHR24420:SF444
6-176 PTHR24420:SF444,SUBFAMILY NOT NAMED

GLLKGNMEVAVKRCMTINEHQKKEFGKEMLILSQINHKNIVKLLGCCLEVEVPMLVYEFIPNGTLFDLIHGNHGQQISLATRLQIAHESAEALTYLHSCASPPILHGDIKSSNILLDRNLIAKVSDFGASILAPTDESQFVTLVQGTCGYLDPEYMQLCLLTDKSDIYSYG

superfamily: SSF56112
IPR011009
6-176 Kinase_like
Protein kinase-like domain

GLLKGNMEVAVKRCMTINEHQKKEFGKEMLILSQINHKNIVKLLGCCLEVEVPMLVYEFIPNGTLFDLIHGNHGQQISLATRLQIAHESAEALTYLHSCASPPILHGDIKSSNILLDRNLIAKVSDFGASILAPTDESQFVTLVQGTCGYLDPEYMQLCLLTDKSDIYSYG

Gene3D: G3DSA:3.30.200.20
7-57 G3DSA:3.30.200.20

LLKGNMEVAVKRCMTINEHQKKEFGKEMLILSQINHKNIVKLLGCCLEVEV

HMMPfam: PF07714
IPR001245
10-176 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

GNMEVAVKRCMTINEHQKKEFGKEMLILSQINHKNIVKLLGCCLEVEVPMLVYEFIPNGTLFDLIHGNHGQQISLATRLQIAHESAEALTYLHSCASPPILHGDIKSSNILLDRNLIAKVSDFGASILAPTDESQFVTLVQGTCGYLDPEYMQLCLLTDKSDIYSYG

Gene3D: G3DSA:1.10.510.10
58-176 G3DSA:1.10.510.10

PMLVYEFIPNGTLFDLIHGNHGQQISLATRLQIAHESAEALTYLHSCASPPILHGDIKSSNILLDRNLIAKVSDFGASILAPTDESQFVTLVQGTCGYLDPEYMQLCLLTDKSDIYSYG

PatternScan: PS00108
IPR008271
109-121 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

ILHGDIKSSNILL






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Analyses

Blast

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