PRGDB00050886 (At2g20141)

At2g20141
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	13605516 (AF361584)
Gene Class	TNL
Domain Type	TIR, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana At2g20141 mRNA, complete cds.

DNA Sequence

ATGAATTCAAGTCCTAAAATGAAACACGATGTGTTCATAAGTTTCAGGAGCAAAGACACTCGTGACAACTTCGTAAGCCATCTCTGTGGCTGTCTACGTAGGAAACGGATCAAAACCTTCTTGTATGACGAACTACCAGCTGACGAGAGGTATGAAGAGTCGTTAAAAGCAATTGAAGTATCGAAAATTTCAGTCATTGTGTTCTCGGAAAACTTTGGGGATTCGAGATGGTGTTTAGATGAAGTTGTAGCCATCTTGAAATGCAAAGAAAAGTTTGGTCAGATTGTGATACCTGTCCTTTACCATGTTGATCCTCTCGACATTGAAAATCAGACAGGAAGTTTTGGAGATGCCTTTGCTAAGCGACGGGATAAAGCCGAACAGCTTCAAGAATGGAAAGATAGTTTTACAGAAGCCATTAACCTCCCTGGATGGAGTACTGCTTATTTGAGGTATAACCCCAAACTCATACTTTCTATTAAAGTTACCGTCGTAAGTGAGCTACAAGATGTTTTAATCTCTGGGATTAATATTATGATCACTGCTTTCTCTACTTGTAAATAG

Protein sequences

Name	Description	Sequence
At2g20141	At2g20141 [Arabidopsis thaliana].	MNSSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPGWSTAYLRYNPKLILSIKVTVVSELQDVLISGINIMITAFSTCK

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52200 IPR000157	4-152	TIR Toll/interleukin-1 receptor homology (TIR) domain	SPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPGWSTAYLRY
Gene3D: G3DSA:3.40.50.10140	6-123	G3DSA:3.40.50.10140	KMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRR
ProfileScan: PS50104 IPR000157	7-142	TIR Toll/interleukin-1 receptor homology (TIR) domain	MKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINL
HMMSmart: SM00255 IPR000157	8-142	TIR Toll/interleukin-1 receptor homology (TIR) domain	KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINL
HMMPfam: PF01582 IPR000157	11-133	TIR Toll/interleukin-1 receptor homology (TIR) domain	VFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWK
HMMPanther: PTHR23155:SF301	18-144	PTHR23155:SF301	KDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPG
HMMPanther: PTHR23155	18-144	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	KDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPG

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Analyses

Blast

Blast matches against Reference R-Genes. Show