PRGDB00050886 (At2g20141)
At2g20141 | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 13605516 (AF361584) |
Gene Class | TNL |
Domain Type | TIR, LRR |
Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGAATTCAAGTCCTAAAATGAAACACGATGTGTTCATAAGTTTCAGGAGCAAAGACACTCGTGACAACTTCGTAAGCCATCTCTGTGGCTGTCTACGTAGGAAACGGATCAAAACCTTCTTGTATGACGAACTACCAGCTGACGAGAGGTATGAAGAGTCGTTAAAAGCAATTGAAGTATCGAAAATTTCAGTCATTGTGTTCTCGGAAAACTTTGGGGATTCGAGATGGTGTTTAGATGAAGTTGTAGCCATCTTGAAATGCAAAGAAAAGTTTGGTCAGATTGTGATACCTGTCCTTTACCATGTTGATCCTCTCGACATTGAAAATCAGACAGGAAGTTTTGGAGATGCCTTTGCTAAGCGACGGGATAAAGCCGAACAGCTTCAAGAATGGAAAGATAGTTTTACAGAAGCCATTAACCTCCCTGGATGGAGTACTGCTTATTTGAGGTATAACCCCAAACTCATACTTTCTATTAAAGTTACCGTCGTAAGTGAGCTACAAGATGTTTTAATCTCTGGGATTAATATTATGATCACTGCTTTCTCTACTTGTAAATAG
Protein sequences
Name | Description | Sequence |
---|---|---|
At2g20141 | At2g20141 [Arabidopsis thaliana]. | MNSSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPGWSTAYLRYNPKLILSIKVTVVSELQDVLISGINIMITAFSTCK |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52200 IPR000157
|
4-152 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPGWSTAYLRY |
Gene3D: G3DSA:3.40.50.10140 | 6-123 | G3DSA:3.40.50.10140 | KMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRR |
ProfileScan: PS50104 IPR000157
|
7-142 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
MKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINL |
HMMSmart: SM00255 IPR000157
|
8-142 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINL |
HMMPfam: PF01582 IPR000157
|
11-133 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWK |
HMMPanther: PTHR23155:SF301 | 18-144 | PTHR23155:SF301 | KDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPG |
HMMPanther: PTHR23155 | 18-144 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | KDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDKAEQLQEWKDSFTEAINLPG |
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