PRGDB00050890 (LhirPtoB)

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LhirPtoB
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 13021863 (AF318492)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Solanum habrochaites

Comment?

Lycopersicon hirsutum Pto-like protein kinase B (LhirPtoB) mRNA, complete cds.

DNA Sequence

ATGGGAAGCAAGTATTCCAAGGCAACAAATTCCATAAATGATGCTTCTAACTTGAGTTATGGCGTTCCTTTTGAAAATTATCGAGTTCCTTTTGTAGATTTGGACGAAGCAACTAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAGGGGTGTTTTGCGTGATGGAACAAAGGTCGCTCTGAAAAGGCATAATCATGACTCCCGACAAAGTATTAAAGAGTTCGAAACTGAAATTGAGATTCTCTCATTTTGCAGCCATCCGCATCTGGTTTCATTGATAGGTTTCTGTGATGAAAGAAATGAGATGATTCTAATTTATGACTACATGGAGAATGGGAACCTCAAGAGCCATTTGTATGGATCAGATCTACCCACTATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAACGGAGTTATACATCGTGATGTCAAATCTTCAAACATATTGCTTGATGAGAATTTTGTGCCAAAAATTACTGATTTTGGAATATCTAAGACAATGTCCGAGCTTGATCAAACCCATCTTAGCACAGCAGTGAAAGGAAATATAGGCTACATTGCCCCTGAATATGCTCTGTGGGGACAGCTGACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTGGAAGTTCTTTGTGCTAGGCCTGCCCTAGATCTTTCAGAGATGATGAGTTTAGGTGATGAGACGCAGACGATGGGACAGTTGGAACAAATTGTAGATCCCACTATTGCGGCCAAAATAAGACCAGAGTCCCTCAGGATGTTTGGAGAAACAGCGATCAAATGCATAGCTCCCTCTAGTAAAAATAGGCCATCAATGGGTGATGTGCTGTGGAAACTGGAGTATGCACTTTGTCTCCAAGAGCCTACCATTCAAGATGATCCTGAATGA


Protein sequences

Name Description Sequence
Pto-like protein kinase B Pto-like protein kinase B [Lycopersicon hirsutum].

MGSKYSKATNSINDASNLSYGVPFENYRVPFVDLDEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKRHNHDSRQSIKEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKSSNILLDENFVPKITDFGISKTMSELDQTHLSTAVKGNIGYIAPEYALWGQLTEKSDVYSFGVVLLEVLCARPALDLSEMMSLGDETQTMGQLEQIVDPTIAAKIRPESLRMFGETAIKCIAPSSKNRPSMGDVLWKLEYALCLQEPTIQDDPE

Domains

Domain Start-End Description Sequence

superfamily: SSF56112
IPR011009
13-319 Kinase_like
Protein kinase-like domain

NDASNLSYGVPFENYRVPFVDLDEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKRHNHDSRQSIKEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKSSNILLDENFVPKITDFGISKTMSELDQTHLSTAVKGNIGYIAPEYALWGQLTEKSDVYSFGVVLLEVLCARPALDLSEMMSLGDETQTMGQLEQIVDPTIAAKIRPESLRMFGETAIKCIAPSSKNRPSMGDVLWKLEYALCLQEPTIQDDP

HMMPanther: PTHR24420
25-312 PTHR24420,FAMILY NOT NAMED

ENYRVPFVDLDEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKRHNHDSRQSIKEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKSSNILLDENFVPKITDFGISKTMSELDQTHLSTAVKGNIGYIAPEYALWGQLTEKSDVYSFGVVLLEVLCARPALDLSEMMSLGDETQTMGQLEQIVDPTIAAKIRPESLRMFGETAIKCIAPSSKNRPSMGDVLWKLEYALCLQE

HMMPanther: PTHR24420:SF785
25-312 PTHR24420:SF785

ENYRVPFVDLDEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKRHNHDSRQSIKEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKSSNILLDENFVPKITDFGISKTMSELDQTHLSTAVKGNIGYIAPEYALWGQLTEKSDVYSFGVVLLEVLCARPALDLSEMMSLGDETQTMGQLEQIVDPTIAAKIRPESLRMFGETAIKCIAPSSKNRPSMGDVLWKLEYALCLQE

Gene3D: G3DSA:3.30.200.20
29-102 G3DSA:3.30.200.20

VPFVDLDEATNNFDDKFFIGEGGFGKVYRGVLRDGTKVALKRHNHDSRQSIKEFETEIEILSFCSHPHLVSLIG

ProfileScan: PS50011
IPR000719
41-315 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FDDKFFIGEGGFGKVYRGVLRDGTKVALKRHNHDSRQSIKEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKSSNILLDENFVPKITDFGISKTMSELDQTHLSTAVKGNIGYIAPEYALWGQLTEKSDVYSFGVVLLEVLCARPALDLSEMMSLGDETQTMGQLEQIVDPTIAAKIRPESLRMFGETAIKCIAPSSKNRPSMGDVLWKLEYALCLQEPTI

PatternScan: PS00107
IPR017441
47-69 PROTEIN_KINASE_ATP
Protein kinase, ATP binding site

IGEGGFGKVYRGVLRDGTKVALK

HMMPfam: PF07714
IPR001245
47-301 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

IGEGGFGKVYRGVLRDGTKVALKRHNHDSRQSIKEFETEIEILSFCSHPHLVSLIGFCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKSSNILLDENFVPKITDFGISKTMSELDQTHLSTAVKGNIGYIAPEYALWGQLTEKSDVYSFGVVLLEVLCARPALDLSEMMSLGDETQTMGQLEQIVDPTIAAKIRPESLRMFGETAIKCIAPSSKNRPSMGDVL

Gene3D: G3DSA:1.10.510.10
103-301 G3DSA:1.10.510.10

FCDERNEMILIYDYMENGNLKSHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTNGVIHRDVKSSNILLDENFVPKITDFGISKTMSELDQTHLSTAVKGNIGYIAPEYALWGQLTEKSDVYSFGVVLLEVLCARPALDLSEMMSLGDETQTMGQLEQIVDPTIAAKIRPESLRMFGETAIKCIAPSSKNRPSMGDVL

PatternScan: PS00108
IPR008271
160-172 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

VIHRDVKSSNILL


List of References

B K Riely, G B Martin
Ancient origin of pathogen recognition specificity conferred by the tomato disease resistance gene Pto.
Proc. Natl. Acad. Sci. U.S.A.: 2001, 98(4);2059-64
PubMed:11172075 WorldCat.org DOI (P p)





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