PRGDB00050957 (PIB)
| PIB | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 4689079 (AB013449) |
| Gene Class | CNL |
| Domain Type | LRR, NBS, Others |
| Chromosome | 2 |
| Gene Species | Oryza sativa |
DNA Sequence
ATGGAGGCGACGGCGCTGAGTGTGGGCAAATCCGTGCTGAATGGAGCGCTTGGCTACGCAAAATCTGCATTTGCTGAGGAGGTGGCCTTGCAGCTTGGTATCCAGAAAGACCACACATTTGTTGCAGATGAGCTTGAGATGATGAGGTCTTTCATGATGGAGGCGCACGAGGAGCAAGATAACAGCAAGGTGGTCAAGACTTGGGTGAAGCAAGTCCGTGACACTGCCTATGATGTTGAGGACAGCCTCCAGGATTTCGCTGTTCATCTTAAGAGGCCATCCTGGTGGCGATTTCCTCGTACGCTGCTCGAGCGGCACCGTGTGGCCAAGCAGATGAAGGAGCTTAGGAACAAGGTCGAGGATGTCAGCCAGAGGAATGTGCGGTACCACCTCATCAAGGGCTCTGCCAAGGCCACCATCAATTCCACTGAGCAATCTAGCGTTATTGCTACAGCCATATTCGGCATTGACGATGCAAGGCGTGCCGCAAAGCAGGACAATCAGAGAGTGGATCTTGTCCAACTAATCAACAGTGAGGATCAGGACCTAAAAGTGATCGCGGTCTGGGGAACAAGTGGTGATATGGGCCAAACAACAATAATCAGGATGGCTTATGAGAACCCAGATGTCCAAATCAGATTCCCATGCCGTGCATGGGTAAGGGTGATGCATCCTTTCAGTCCAAGAGACTTTGTCCAGAGCTTGGTGAATCAGCTTCATGCAACCCAAGGGGTTGAAGCTCTGTTGGAGAAAGAGAAGACAGAACAAGATTTAGCTAAGAAATTCAATGGATGTGTGAATGATAGGAAGTGTCTAATTGTGCTTAATGACCTATCCACCATTGAAGAGTGGGACCAGATTAAGAAATGCTTCCAAAAATGCAGGAAAGGAAGCCGAATCATAGTGTCAAGCACTCAAGTTGAAGTTGCAAGCTTATGTGCTGGGCAAGAAAGCCAAGCCTCAGAGCTAAAGCAATTGTCTGCTGATCAGACCCTTTACGCATTCTACGACAAGGGTTCCCAAATTATAGAGGATTCAGTGAAGCCAGTGTCTATCTCGGATGTGGCCATCACAAGTACAAACAATCATACAGTGGCCCATGGTGAGATTATAGATGATCAATCAATGGATGCTGATGAGAAGAAGGTGGCTAGAAAGAGTCTTACTCGCATTAGGACAAGTGTTGGTGCTTCGGAGGAATCACAACTTATTGGGCGAGAGAAAGAAATATCTGAAATAACACACTTAATTTTAAACAATGATAGCCAGCAGGTTCAGGTGATCTCTGTGTGGGGAATGGGTGGCCTTGGAAAAACCACCCTAGTAAGCGGTGTTTATCAAAGCCCAAGGCTGAGTGATAAGTTTGACAAGTATGTTTTTGTCACAATCATGCGTCCTTTCATTCTTGTAGAGCTCCTTAGGAGTTTGGCTGAGCAACTACATAAAGGATCTTCTAAGAAGGAAGAACTGTTAGAAAATAGAGTCAGCAGTAAGAAATCACTAGCATCGATGGAGGATACCGAGTTGACTGGGCAGTTGAAAAGGCTTTTAGAAAAGAAAAGTTGCTTGATTGTTCTAGATGATTTCTCAGATACCTCAGAATGGGACCAGATAAAACCAACGTTATTCCCCCTGTTGGAAAAGACAAGCCGAATAATTGTGACTACAAGAAAAGAGAATATTGCCAACCATTGCTCAGGGAAAAATGGAAATGTGCACAACCTTAAAGTTCTTAAACATAATGATGCATTGTGCCTCTTGAGTGAGAAGGTATTTGAGGAGGCTACATATTTGGATGATCAGAACAATCCAGAGTTGGTTAAAGAAGCAAAACAAATCCTAAAGAAGTGCGATGGACTGCCCCTTGCAATAGTTGTCATAGGTGGATTCTTGGCAAACCGACCAAAGACCCCAGAAGAGTGGAGAAAATTGAACGAGAATATCAATGCTGAGTTGGAAATGAATCCAGAGCTTGGAATGATAAGAACCGTCCTTGAAAAAAGCTATGATGGTTTACCATACCATCTCAAGTCATGTTTTTTATATCTGTCCATTTTCCCTGAAGACCAGATCATTAGTCGAAGGCGTTTGGTGCATCGTTGGGCAGCAGAAGGTTACTCAACTGCAGCACATGGGAAATCTGCCATTGAAATAGCTAACGGCTACTTCATGGAACTCAAGAATAGAAGCATGATTTTACCATTCCAGCAATCAGGTAGCAGCAGGAAATCAATTGACTCTTGCAAAGTCCATGATCTCATGCGTGACATCGCCATCTCAAAGTCAACGGAGGAAAACCTTGTTTTTAGGGTGGAGGAAGGCTGCAGCGCGTACATACATGGTGCAATTCGTCATCTTGCTATAAGTAGCAACTGGAAGGGAGATAAGAGTGAATTCGAGGGCATAGTGGACCTGTCCCGAATACGATCGTTATCTCTGTTTGGGGATTGGAAGCCATTTTTTGTTTATGGCAAGATGAGGTTTATACGAGTGCTTGACTTTGAAGGGACTAGAGGTCTAGAATATCATCACCTTGATCAGATTTGGAAGCTTAATCACCTAAAATTCCTTTCTCTACGAGGATGCTATCGTATTGATCTACTGCCAGATTTACTGGGCAACCTGAGGCAACTCCAGATGCTAGACATCAGAGGTACATATGTAAAGGCTTTGCCAAAAACCATCATCAAGCTTCAGAAGCTACAGTACATTCATGCTGGGCGCAAAACAGACTATGTATGGGAGGAAAAGCATAGTTTAATGCAGAGGTGTCGTAAGGTGGGATGTATATGTGCAACATGTTGCCTCCCTCTTCTTTGCGAAATGTATGGCCCTCTCCATAAGGCCCTAGCCCGGCGTGATGCGTGGACTTTCGCTTGCTGCGTGAAATTCCCATCTATCATGACGGGAGTACATGAAGAGGAAGGCGCTATGGTGCCAAGTGGGATTAGAAAACTGAAAGACTTGCACACACTAAGGAACATAAATGTCGGAAGGGGAAATGCCATCCTACGAGATATCGGAATGCTCACAGGATTACACAAGTTAGGAGTGGCTGGCATCAACAAGAAGAATGGACGAGCGTTTCGCTTGGCCATTTCCAACCTCAACAAGCTGGAATCACTGTCTGTGAGTTCAGCAGGGATGCCGGGCTTGTGTGGTTGCTTGGATGATATATCCTCGCCTCCGGAAAACCTACAGAGCCTCAAGCTGTACGGCAGTTTGAAAACGTTGCCGGAATGGATCAAGGAGCTCCAGCATCTCGTGAAGTTAAAACTAGTGAGTACTAGGCTATTGGAGCACGACGTTGCTATGGAATTCCTTGGGGAACTACCGAAGGTGGAAATTCTAGTTATTTCACCGTTTAAGAGTGAAGAAATTCATTTCAAGCCTCCGCAGACTGGGACTGCTTTTGTAAGCCTCAGGGTGCTCAAGCTTGCAGGATTATGGGGCATCAAATCAGTGAAGTTTGAGGAAGGAACAATGCCCAAACTTGAGAGGCTGCAGGTCCAAGGGCGAATAGAAAATGAAATTGGCTTTTCTGGGTTAGAGTTTCTCCAAAACATCAACGAAGTCCAGCTCAGTGTTTGGTTTCCCACGGATCATGATAGGATAAGAGCCGCGCGCGCCGCGGGCGCTGATTATGAGACTGCCTGGGAGGAAGAGGTACAGGAAGCAAGGCGCAAGGGAGGTGAACTGAAGAGGAAAATCCGAGAACAGCTTGCTCGGAATCCAAACCAACCCATCATTACCTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Pib | Pib [Oryza sativa Japonica Group]. | MEATALSVGKSVLNGALGYAKSAFAEEVALQLGIQKDHTFVADELEMMRSFMMEAHEEQDNSKVVKTWVKQVRDTAYDVEDSLQDFAVHLKRPSWWRFPRTLLERHRVAKQMKELRNKVEDVSQRNVRYHLIKGSAKATINSTEQSSVIATAIFGIDDARRAAKQDNQRVDLVQLINSEDQDLKVIAVWGTSGDMGQTTIIRMAYENPDVQIRFPCRAWVRVMHPFSPRDFVQSLVNQLHATQGVEALLEKEKTEQDLAKKFNGCVNDRKCLIVLNDLSTIEEWDQIKKCFQKCRKGSRIIVSSTQVEVASLCAGQESQASELKQLSADQTLYAFYDKGSQIIEDSVKPVSISDVAITSTNNHTVAHGEIIDDQSMDADEKKVARKSLTRIRTSVGASEESQLIGREKEISEITHLILNNDSQQVQVISVWGMGGLGKTTLVSGVYQSPRLSDKFDKYVFVTIMRPFILVELLRSLAEQLHKGSSKKEELLENRVSSKKSLASMEDTELTGQLKRLLEKKSCLIVLDDFSDTSEWDQIKPTLFPLLEKTSRIIVTTRKENIANHCSGKNGNVHNLKVLKHNDALCLLSEKVFEEATYLDDQNNPELVKEAKQILKKCDGLPLAIVVIGGFLANRPKTPEEWRKLNENINAELEMNPELGMIRTVLEKSYDGLPYHLKSCFLYLSIFPEDQIISRRRLVHRWAAEGYSTAAHGKSAIEIANGYFMELKNRSMILPFQQSGSSRKSIDSCKVHDLMRDIAISKSTEENLVFRVEEGCSAYIHGAIRHLAISSNWKGDKSEFEGIVDLSRIRSLSLFGDWKPFFVYGKMRFIRVLDFEGTRGLEYHHLDQIWKLNHLKFLSLRGCYRIDLLPDLLGNLRQLQMLDIRGTYVKALPKTIIKLQKLQYIHAGRKTDYVWEEKHSLMQRCRKVGCICATCCLPLLCEMYGPLHKALARRDAWTFACCVKFPSIMTGVHEEEGAMVPSGIRKLKDLHTLRNINVGRGNAILRDIGMLTGLHKLGVAGINKKNGRAFRLAISNLNKLESLSVSSAGMPGLCGCLDDISSPPENLQSLKLYGSLKTLPEWIKELQHLVKLKLVSTRLLEHDVAMEFLGELPKVEILVISPFKSEEIHFKPPQTGTAFVSLRVLKLAGLWGIKSVKFEEGTMPKLERLQVQGRIENEIGFSGLEFLQNINEVQLSVWFPTDHDRIRAARAAGADYETAWEEEVQEARRKGGELKRKIREQLARNPNQPIIT |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 9-1195 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GKSVLNGALGYAKSAFAEEVALQLGIQKDHTFVADELEMMRSFMMEAHEEQDNSKVVKTWVKQVRDTAYDVEDSLQDFAVHLKRPSWWRFPRTLLERHRVAKQMKELRNKVEDVSQRNVRYHLIKGSAKATINSTEQSSVIATAIFGIDDARRAAKQDNQRVDLVQLINSEDQDLKVIAVWGTSGDMGQTTIIRMAYENPDVQIRFPCRAWVRVMHPFSPRDFVQSLVNQLHATQGVEALLEKEKTEQDLAKKFNGCVNDRKCLIVLNDLSTIEEWDQIKKCFQKCRKGSRIIVSSTQVEVASLCAGQESQASELKQLSADQTLYAFYDKGSQIIEDSVKPVSISDVAITSTNNHTVAHGEIIDDQSMDADEKKVARKSLTRIRTSVGASEESQLIGREKEISEITHLILNNDSQQVQVISVWGMGGLGKTTLVSGVYQSPRLSDKFDKYVFVTIMRPFILVELLRSLAEQLHKGSSKKEELLENRVSSKKSLASMEDTELTGQLKRLLEKKSCLIVLDDFSDTSEWDQIKPTLFPLLEKTSRIIVTTRKENIANHCSGKNGNVHNLKVLKHNDALCLLSEKVFEEATYLDDQNNPELVKEAKQILKKCDGLPLAIVVIGGFLANRPKTPEEWRKLNENINAELEMNPELGMIRTVLEKSYDGLPYHLKSCFLYLSIFPEDQIISRRRLVHRWAAEGYSTAAHGKSAIEIANGYFMELKNRSMILPFQQSGSSRKSIDSCKVHDLMRDIAISKSTEENLVFRVEEGCSAYIHGAIRHLAISSNWKGDKSEFEGIVDLSRIRSLSLFGDWKPFFVYGKMRFIRVLDFEGTRGLEYHHLDQIWKLNHLKFLSLRGCYRIDLLPDLLGNLRQLQMLDIRGTYVKALPKTIIKLQKLQYIHAGRKTDYVWEEKHSLMQRCRKVGCICATCCLPLLCEMYGPLHKALARRDAWTFACCVKFPSIMTGVHEEEGAMVPSGIRKLKDLHTLRNINVGRGNAILRDIGMLTGLHKLGVAGINKKNGRAFRLAISNLNKLESLSVSSAGMPGLCGCLDDISSPPENLQSLKLYGSLKTLPEWIKELQHLVKLKLVSTRLLEHDVAMEFLGELPKVEILVISPFKSEEIHFKPPQTGTAFVSLRVLKLAGLWGIKSVKFEEGTMPKLERLQVQGRIENEIGFSGLEFLQNINEVQLS |
| HMMPanther: PTHR23155:SF179 | 9-1195 | OS08G0539400 PROTEIN,OS08G0539400 PROTEIN | GKSVLNGALGYAKSAFAEEVALQLGIQKDHTFVADELEMMRSFMMEAHEEQDNSKVVKTWVKQVRDTAYDVEDSLQDFAVHLKRPSWWRFPRTLLERHRVAKQMKELRNKVEDVSQRNVRYHLIKGSAKATINSTEQSSVIATAIFGIDDARRAAKQDNQRVDLVQLINSEDQDLKVIAVWGTSGDMGQTTIIRMAYENPDVQIRFPCRAWVRVMHPFSPRDFVQSLVNQLHATQGVEALLEKEKTEQDLAKKFNGCVNDRKCLIVLNDLSTIEEWDQIKKCFQKCRKGSRIIVSSTQVEVASLCAGQESQASELKQLSADQTLYAFYDKGSQIIEDSVKPVSISDVAITSTNNHTVAHGEIIDDQSMDADEKKVARKSLTRIRTSVGASEESQLIGREKEISEITHLILNNDSQQVQVISVWGMGGLGKTTLVSGVYQSPRLSDKFDKYVFVTIMRPFILVELLRSLAEQLHKGSSKKEELLENRVSSKKSLASMEDTELTGQLKRLLEKKSCLIVLDDFSDTSEWDQIKPTLFPLLEKTSRIIVTTRKENIANHCSGKNGNVHNLKVLKHNDALCLLSEKVFEEATYLDDQNNPELVKEAKQILKKCDGLPLAIVVIGGFLANRPKTPEEWRKLNENINAELEMNPELGMIRTVLEKSYDGLPYHLKSCFLYLSIFPEDQIISRRRLVHRWAAEGYSTAAHGKSAIEIANGYFMELKNRSMILPFQQSGSSRKSIDSCKVHDLMRDIAISKSTEENLVFRVEEGCSAYIHGAIRHLAISSNWKGDKSEFEGIVDLSRIRSLSLFGDWKPFFVYGKMRFIRVLDFEGTRGLEYHHLDQIWKLNHLKFLSLRGCYRIDLLPDLLGNLRQLQMLDIRGTYVKALPKTIIKLQKLQYIHAGRKTDYVWEEKHSLMQRCRKVGCICATCCLPLLCEMYGPLHKALARRDAWTFACCVKFPSIMTGVHEEEGAMVPSGIRKLKDLHTLRNINVGRGNAILRDIGMLTGLHKLGVAGINKKNGRAFRLAISNLNKLESLSVSSAGMPGLCGCLDDISSPPENLQSLKLYGSLKTLPEWIKELQHLVKLKLVSTRLLEHDVAMEFLGELPKVEILVISPFKSEEIHFKPPQTGTAFVSLRVLKLAGLWGIKSVKFEEGTMPKLERLQVQGRIENEIGFSGLEFLQNINEVQLS |
| Coil: coil | 105-126 | coiled-coil | RHRVAKQMKELRNKVEDVSQRN |
| superfamily: SSF52540 | 153-341 | P-loop containing nucleoside triphosphate hydrolases | IFGIDDARRAAKQDNQRVDLVQLINSEDQDLKVIAVWGTSGDMGQTTIIRMAYENPDVQIRFPCRAWVRVMHPFSPRDFVQSLVNQLHATQGVEALLEKEKTEQDLAKKFNGCVNDRKCLIVLNDLSTIEEWDQIKKCFQKCRKGSRIIVSSTQVEVASLCAGQESQASELKQLSADQTLYAFYDKGSQ |
| HMMPfam: PF00931 IPR002182
|
174-335 | NB-ARC,NBS NB-ARC
|
QLINSEDQDLKVIAVWGTSGDMGQTTIIRMAYENPDVQIRFPCRAWVRVMHPFSPRDFVQSLVNQLHATQGVEALLEKEKTEQDLAKKFNGCVNDRKCLIVLNDLSTIEEWDQIKKCFQKCRKGSRIIVSSTQVEVASLCAGQESQASELKQLSADQTLYAF |
| Gene3D: G3DSA:3.40.50.300 | 401-549 | no description | SQLIGREKEISEITHLILNNDSQQVQVISVWGMGGLGKTTLVSGVYQSPRLSDKFDKYVFVTIMRPFILVELLRSLAEQLHKGSSKKEELLENRVSSKKSLASMEDTELTGQLKRLLEKKSCLIVLDDFSDTSEWDQIKPTLFPLLEKT |
| superfamily: SSF52540 | 401-648 | P-loop containing nucleoside triphosphate hydrolases | SQLIGREKEISEITHLILNNDSQQVQVISVWGMGGLGKTTLVSGVYQSPRLSDKFDKYVFVTIMRPFILVELLRSLAEQLHKGSSKKEELLENRVSSKKSLASMEDTELTGQLKRLLEKKSCLIVLDDFSDTSEWDQIKPTLFPLLEKTSRIIVTTRKENIANHCSGKNGNVHNLKVLKHNDALCLLSEKVFEEATYLDDQNNPELVKEAKQILKKCDGLPLAIVVIGGFLANRPKTPEEWRKLNENI |
| HMMPfam: PF00931 IPR002182
|
407-709 | NB-ARC,NBS NB-ARC
|
EKEISEITHLILNNDSQQVQVISVWGMGGLGKTTLVSGVYQSPRLSDKFDKYVFVTIMRPFILVELLRSLAEQLHKGSSKKEELLENRVSSKKSLASMEDTELTGQLKRLLEKKSCLIVLDDFSDTSEWDQIKPTLFPLLEKTSRIIVTTRKENIANHCSGKNGNVHNLKVLKHNDALCLLSEKVFEEATYLDDQNNPELVKEAKQILKKCDGLPLAIVVIGGFLANRPKTPEEWRKLNENINAELEMNPELGMIRTVLEKSYDGLPYHLKSCFLYLSIFPEDQIISRRRLVHRWAAEGYSTA |
| FPrintScan: PR00364 IPR000767
|
427-442 | DISEASERSIST Disease resistance protein
|
VISVWGMGGLGKTTLV |
| Coil: coil | 473-494 | coiled-coil | LRSLAEQLHKGSSKKEELLENR |
| FPrintScan: PR00364 IPR000767
|
516-530 | DISEASERSIST Disease resistance protein
|
LLEKKSCLIVLDDFS |
| FPrintScan: PR00364 IPR000767
|
617-631 | DISEASERSIST Disease resistance protein
|
CDGLPLAIVVIGGFL |
| superfamily: SSF52058 | 749-1195 | L domain-like,LRR | KVHDLMRDIAISKSTEENLVFRVEEGCSAYIHGAIRHLAISSNWKGDKSEFEGIVDLSRIRSLSLFGDWKPFFVYGKMRFIRVLDFEGTRGLEYHHLDQIWKLNHLKFLSLRGCYRIDLLPDLLGNLRQLQMLDIRGTYVKALPKTIIKLQKLQYIHAGRKTDYVWEEKHSLMQRCRKVGCICATCCLPLLCEMYGPLHKALARRDAWTFACCVKFPSIMTGVHEEEGAMVPSGIRKLKDLHTLRNINVGRGNAILRDIGMLTGLHKLGVAGINKKNGRAFRLAISNLNKLESLSVSSAGMPGLCGCLDDISSPPENLQSLKLYGSLKTLPEWIKELQHLVKLKLVSTRLLEHDVAMEFLGELPKVEILVISPFKSEEIHFKPPQTGTAFVSLRVLKLAGLWGIKSVKFEEGTMPKLERLQVQGRIENEIGFSGLEFLQNINEVQLS |
| FPrintScan: PR00364 IPR000767
|
849-865 | DISEASERSIST Disease resistance protein
|
WKLNHLKFLSLRGCYRI |
| Gene3D: G3DSA:3.80.10.10 | 975-1038 | no description | EGAMVPSGIRKLKDLHTLRNINVGRGNAILRDIGMLTGLHKLGVAGINKKNGRAFRLAISNLNK |
| Gene3D: G3DSA:3.80.10.10 | 1039-1190 | no description | LESLSVSSAGMPGLCGCLDDISSPPENLQSLKLYGSLKTLPEWIKELQHLVKLKLVSTRLLEHDVAMEFLGELPKVEILVISPFKSEEIHFKPPQTGTAFVSLRVLKLAGLWGIKSVKFEEGTMPKLERLQVQGRIENEIGFSGLEFLQNIN |
| Seg: seg | 1204-1213 | seg | RIRAARAAGA |
| Coil: coil | 1223-1244 | coiled-coil | VQEARRKGGELKRKIREQLARN |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Rice blast disease |
List of References
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