PRGDB00061446 (Cre1)
| Cre1 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 22252945 (AY124651) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, Others |
| Chromosome | 2 |
| Gene Species | Aegilops tauschii |
DNA Sequence
ATGGATCCAATTACCATTGCTGCCGTAGGATGGAGCGTGGCCATGGTTGGTTGGGTCGCCTCGGCCACCATCTCTAAGCTCCTCGCCAAAGGCTTCGATTACCTCGAATATGACACAGCAAAGAAGCTGGCGCAACTTGAGCCAAAAATCTTGGTGCTGGAACGGGTCATGGAAGTTGTCGAGACGAGCCCATACAGGCCTCGTCTAGAGCAGCTGTTCAAGCGGCTTAAATATGCTTTCTATGAAGCCGAAGAAATCTTGGATGCTGTCGAGTATCACTGTCTAGAGAAGCAGATCAAAACAGGGAAACTACAGCCGGGCGGTGGCTCGTCTCTACCTAAAAAGGATCGTCTGAAAAAGAAGGAGAGTCGTATGTCAAATAAGAAGTTGGTAAAGAGCCTAAAGAAGATAGAAAACATTATAAATGAAGCACACCAGATTTTGGAGAAGCTTAACTTGTCAAGCATAAGTGATGGCAATATACGACACACAATGGTTGTCAATCCTACGACTACCGCAGTTTCCCCGCAAAAAGTTTTTGGTCGAGATAATGATCGCGACAAGATCATAGCAATGCTTCATGAAAAGGAAGGTGGTCTTGATCCAAGCACTAGCAAAGGTCTATGTTTTTCTGTAATTGGCATACATGGAGTCAGCGGGTCTGGGAAATCTACCCTTGCACAGTTTGTTTATGCCCACGAGAAAAATGACAAGCAAGACAACAAGGAAGACCATTTCGACCTTGTTATGTGGGTTCATGTCTCTCAGGATTTTAGTGTGTGGGGCATCTTCAAGGAGTTGTATGAGGCAGCTTCAGATCCTAAGGTTCCATGCCCTCAATTTAATAACTTGAATGCCTTGGAAGAAGAACTGGAGAGGAAACTAGATGGAAAGCGATTCCTTCTGGTACTGGATGATGTCTGGTGCAATGCGGATGTTGGTAACCAGGAGCTACCAAAGTTACTTTCTCCACTGAAGAAAGGAAAGAAAGGAAGCAAGATCCTAGTGACAACTCGAAGTAAATATGCACTACCGGATCTATGTCCTGGTGTGAGATATACTGCCATGCCGATAACTGAGGTTGATGATACCGCCTTCTTTGAGTTGTTCATGCATTATGCCCTCGAAGATGGCCAAGATCAAAGCATGTTCCAGAACATTGGGGTTGAGATTGCAAAAAAGCTGAAGGGGTCACCTTTAGCAGCTAGAACAGTGGGTGGAAATTTACGTCGACAGCAAGATGTTGACCATTGGAGAAGAGTCGGAGATCAAGACCTTTTCAAGGTATGGACGGGACCTCTGTGGTGGAGCTACTATCAGCTTGGTGAGCAGGCTAGGCGTTGCTTTGCTTACTGCAGTATTTTTCCTAGGAGACATCGCTTGTACCGTGATGAATTAGTTAGACTCTGGATGGCAGAAGGGTTCATAAGAAACACAGATGAAGGGGCGGATGCTGAAGACGTTGGTCTGGGAATATTTAATGAACTATTGTCGATATCATTTCTTCAACCAGGAGGCCAGGACTGGTACAATCATGGCAAGGAATACTATTTAGTTCATGATTTGCTGTATGATTTAGCAGGGGCAGTAGCTGGAACTGACTGCTTCAGAATTGACAATAACATGATCCAGAAAGGAGAAAGCTGGGCAAAAGATGTTCCCAGAGACGTTCGCCATCTTTTTGTTCAGAGTTATGATGCAGCATTGATTACAGGGAAGATTCTTGTATTGGAAAATTTACACACACTCGTCATTTATAGTGTTGGAGGGGATACAACAGTTGAGGAAATAGTCATCAAGAACATACTCAAGAGTCTGCCTAAACTGCGGGTACTAGCAATAGCTTTATGTCTGGAAAAGGATGGATTTATTTGTAGACCAAATATATTGTCTGTTCCAGAATCTATTAGTCAATTAAAACATCTACGATATCTTGCTTTCCGGACAGATATTGAATGCAGAGTAATTTTACCAAGCAGTCTAAACCAGCTTTACCAGATGCAACTGCTAGATTTTGGTGTCTGCATGAATTTGGTATTTTCCTGTGGTGATCTTATCAACTTGCGGCATGTATGCAGCGGTCCTGGATTGCAATTTTCAAACATCGGTAGGCTTGTCTCACTCCAAACAATCCCAGCATTCAAAGTAAGTCATGAACAAGGACATGAGGCAAAGCAGTTGAGGTACCTAAACAGGCTCAGCGGCGAACTGAGTATATATGGTCTCCAAAGTGTTGAAAGCAGAGAGGAAGCTCTTGCATTCGATCTAGCTGCCAAGAAACGGCTCGCAGAACTAACACTATCATTCGGTGGAAGTTCAGAAGTTGCAGCAGAGGTACTTGAGGGCCTTTGTCCTCCCGTGGGGCTTGTAACACTCGACATCCGTGACTACGATGGTTTGGTATACCCAAAGTGGATGGTGGGCAGGCAAAATGGCGCACCAGAGAAGCTGCAACAACTTGGTCTCTCAGGATGGAGCCAGCCAGGACCTGCTCCTGCACTGAAGGCTTTCAATCATCTTCGTTGCCTCAATCTGATGCACTGCAGCTGGAACGCCTTGCCATGCAATATGGAGCACCTCAGCTCGCTCGAAACAGTAATCATTATTAAATGTTTGAATATCCGGTCGCTTCCAACGCTGCCACAGTCTCTTACGTATTTTTGGCTCCTGAAGTGCGACGATGGGTTCATGGAGTCTTGTCAAACAGTTGGACATCCAAACTGGAAAAAGATTCAACACATCTGCAGGAAATATTTTAGTGAATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| go35 NBS-LRR | go35 NBS-LRR [Aegilops tauschii]. | MDPITIAAVGWSVAMVGWVASATISKLLAKGFDYLEYDTAKKLAQLEPKILVLERVMEVVETSPYRPRLEQLFKRLKYAFYEAEEILDAVEYHCLEKQIKTGKLQPGGGSSLPKKDRLKKKESRMSNKKLVKSLKKIENIINEAHQILEKLNLSSISDGNIRHTMVVNPTTTAVSPQKVFGRDNDRDKIIAMLHEKEGGLDPSTSKGLCFSVIGIHGVSGSGKSTLAQFVYAHEKNDKQDNKEDHFDLVMWVHVSQDFSVWGIFKELYEAASDPKVPCPQFNNLNALEEELERKLDGKRFLLVLDDVWCNADVGNQELPKLLSPLKKGKKGSKILVTTRSKYALPDLCPGVRYTAMPITEVDDTAFFELFMHYALEDGQDQSMFQNIGVEIAKKLKGSPLAARTVGGNLRRQQDVDHWRRVGDQDLFKVWTGPLWWSYYQLGEQARRCFAYCSIFPRRHRLYRDELVRLWMAEGFIRNTDEGADAEDVGLGIFNELLSISFLQPGGQDWYNHGKEYYLVHDLLYDLAGAVAGTDCFRIDNNMIQKGESWAKDVPRDVRHLFVQSYDAALITGKILVLENLHTLVIYSVGGDTTVEEIVIKNILKSLPKLRVLAIALCLEKDGFICRPNILSVPESISQLKHLRYLAFRTDIECRVILPSSLNQLYQMQLLDFGVCMNLVFSCGDLINLRHVCSGPGLQFSNIGRLVSLQTIPAFKVSHEQGHEAKQLRYLNRLSGELSIYGLQSVESREEALAFDLAAKKRLAELTLSFGGSSEVAAEVLEGLCPPVGLVTLDIRDYDGLVYPKWMVGRQNGAPEKLQQLGLSGWSQPGPAPALKAFNHLRCLNLMHCSWNALPCNMEHLSSLETVIIIKCLNIRSLPTLPQSLTYFWLLKCDDGFMESCQTVGHPNWKKIQHICRKYFSE |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Coil: coil | 134-155 | coiled-coil | LKKIENIINEAHQILEKLNLSS |
| superfamily: SSF52540 | 162-431 | P-loop containing nucleoside triphosphate hydrolases | RHTMVVNPTTTAVSPQKVFGRDNDRDKIIAMLHEKEGGLDPSTSKGLCFSVIGIHGVSGSGKSTLAQFVYAHEKNDKQDNKEDHFDLVMWVHVSQDFSVWGIFKELYEAASDPKVPCPQFNNLNALEEELERKLDGKRFLLVLDDVWCNADVGNQELPKLLSPLKKGKKGSKILVTTRSKYALPDLCPGVRYTAMPITEVDDTAFFELFMHYALEDGQDQSMFQNIGVEIAKKLKGSPLAARTVGGNLRRQQDVDHWRRVGDQDLFKVWT |
| Gene3D: G3DSA:3.40.50.300 | 180-346 | no description | FGRDNDRDKIIAMLHEKEGGLDPSTSKGLCFSVIGIHGVSGSGKSTLAQFVYAHEKNDKQDNKEDHFDLVMWVHVSQDFSVWGIFKELYEAASDPKVPCPQFNNLNALEEELERKLDGKRFLLVLDDVWCNADVGNQELPKLLSPLKKGKKGSKILVTTRSKYALPD |
| HMMPfam: PF00931 IPR002182
|
210-480 | NB-ARC,NBS NB-ARC
|
FSVIGIHGVSGSGKSTLAQFVYAHEKNDKQDNKEDHFDLVMWVHVSQDFSVWGIFKELYEAASDPKVPCPQFNNLNALEEELERKLDGKRFLLVLDDVWCNADVGNQELPKLLSPLKKGKKGSKILVTTRSKYALPDLCPGVRYTAMPITEVDDTAFFELFMHYALEDGQDQSMFQNIGVEIAKKLKGSPLAARTVGGNLRRQQDVDHWRRVGDQDLFKVWTGPLWWSYYQLGEQARRCFAYCSIFPRRHRLYRDELVRLWMAEGFIRNTD |
| Seg: seg | 211-224 | seg | SVIGIHGVSGSGKS |
| FPrintScan: PR00364 IPR000767
|
212-227 | DISEASERSIST Disease resistance protein
|
VIGIHGVSGSGKSTLA |
| Seg: seg | 282-292 | seg | NNLNALEEELE |
| FPrintScan: PR00364 IPR000767
|
294-308 | DISEASERSIST Disease resistance protein
|
KLDGKRFLLVLDDVW |
| Seg: seg | 318-333 | seg | LPKLLSPLKKGKKGSK |
| FPrintScan: PR00364 IPR000767
|
395-409 | DISEASERSIST Disease resistance protein
|
LKGSPLAARTVGGNL |
| superfamily: SSF52058 | 506-883 | L domain-like,LRR | GQDWYNHGKEYYLVHDLLYDLAGAVAGTDCFRIDNNMIQKGESWAKDVPRDVRHLFVQSYDAALITGKILVLENLHTLVIYSVGGDTTVEEIVIKNILKSLPKLRVLAIALCLEKDGFICRPNILSVPESISQLKHLRYLAFRTDIECRVILPSSLNQLYQMQLLDFGVCMNLVFSCGDLINLRHVCSGPGLQFSNIGRLVSLQTIPAFKVSHEQGHEAKQLRYLNRLSGELSIYGLQSVESREEALAFDLAAKKRLAELTLSFGGSSEVAAEVLEGLCPPVGLVTLDIRDYDGLVYPKWMVGRQNGAPEKLQQLGLSGWSQPGPAPALKAFNHLRCLNLMHCSWNALPCNMEHLSSLETVIIIKCLNIRSLPTLPQS |
| HMMPanther: PTHR23155 | 629-904 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ILSVPESISQLKHLRYLAFRTDIECRVILPSSLNQLYQMQLLDFGVCMNLVFSCGDLINLRHVCSGPGLQFSNIGRLVSLQTIPAFKVSHEQGHEAKQLRYLNRLSGELSIYGLQSVESREEALAFDLAAKKRLAELTLSFGGSSEVAAEVLEGLCPPVGLVTLDIRDYDGLVYPKWMVGRQNGAPEKLQQLGLSGWSQPGPAPALKAFNHLRCLNLMHCSWNALPCNMEHLSSLETVIIIKCLNIRSLPTLPQSLTYFWLLKCDDGFMESCQTVG |
| HMMPanther: PTHR23155:SF143 | 629-904 | OS04G0325300 PROTEIN (FRAGMENT),OS04G0325300 PROTEIN (FRAGMENT) | ILSVPESISQLKHLRYLAFRTDIECRVILPSSLNQLYQMQLLDFGVCMNLVFSCGDLINLRHVCSGPGLQFSNIGRLVSLQTIPAFKVSHEQGHEAKQLRYLNRLSGELSIYGLQSVESREEALAFDLAAKKRLAELTLSFGGSSEVAAEVLEGLCPPVGLVTLDIRDYDGLVYPKWMVGRQNGAPEKLQQLGLSGWSQPGPAPALKAFNHLRCLNLMHCSWNALPCNMEHLSSLETVIIIKCLNIRSLPTLPQSLTYFWLLKCDDGFMESCQTVG |
| FPrintScan: PR00364 IPR000767
|
662-678 | DISEASERSIST Disease resistance protein
|
NQLYQMQLLDFGVCMNL |
| Gene3D: G3DSA:3.80.10.10 | 795-892 | no description | RDYDGLVYPKWMVGRQNGAPEKLQQLGLSGWSQPGPAPALKAFNHLRCLNLMHCSWNALPCNMEHLSSLETVIIIKCLNIRSLPTLPQSLTYFWLLKC |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Cereal cyst nematode | Heterodera avenae |
List of References
John de Majnik, Francis C Ogbonnaya, Odile Moullet, Evans S Lagudah
The cre1 and cre3 nematode resistance genes are located at homeologous loci in the wheat genome.
Mol. Plant Microbe Interact.: 2003, 16(12);1129-34
PubMed:14651346
WorldCat.org
DOI
(P p)
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