PRGDB00061449 (Xa5)
Xa5 | |
---|---|
Gene Type | Reference_R-Genes,_manually_curated |
GenBank | 55585038 (AY643716) |
Gene Class | Other |
Domain Type | |
Chromosome | 5 |
Gene Species | Oryza sativa Indica Group |
DNA Sequence
ATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGAGCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAA
Protein sequences
Name | Description | Sequence |
---|---|---|
transcription factor IIA gamma subunit | transcription factor IIA gamma subunit [Oryza sativa Indica Group]. | MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPIR: PIRSF009415 IPR003194
|
1-106 | Transcription initiation factor IIA, gamma subunit Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ |
HMMPanther: PTHR10966 IPR003194
|
1-106 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ |
BlastProDom: PD009224 IPR015872
|
1-50 | Q7FPX2_ORYSA_Q7FPX2; Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALE |
Gene3D: G3DSA:1.10.287.190 IPR015872
|
2-54 | no description Transcription initiation factor IIA, gamma subunit
|
ATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVK |
HMMPfam: PF02268 IPR015872
|
3-50 | TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit
|
TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALE |
superfamily: SSF47396 IPR009083
|
4-54 | Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA, helical
|
FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVK |
HMMPfam: PF02751 IPR015871
|
52-101 | TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit
|
QVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDS |
superfamily: SSF50784 IPR009088
|
52-102 | Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA, beta-barrel
|
QVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK |
Gene3D: G3DSA:2.30.18.10 IPR009088
|
55-104 | no description Transcription factor IIA, beta-barrel
|
SKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLL |
Diseases
Disease | Pathogen | Avirulence gene |
---|---|---|
Bacterial Blight | Xanthomonas oryzae |
List of References
Anjali S Iyer, Susan R McCouch
The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance.
Mol. Plant Microbe Interact.: 2004, 17(12);1348-54
PubMed:15597740
WorldCat.org
DOI
(P p)
List of Contributions
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