PRGDB00061449 (Xa5)
| Xa5 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 55585038 (AY643716) |
| Gene Class | Other |
| Domain Type | |
| Chromosome | 5 |
| Gene Species | Oryza sativa Indica Group |
DNA Sequence
ATGGCCACCTTCGAGCTCTACCGGAGGTCCACCATTGGCATGTGCCTCACTGAGACGCTCGACGAGATGGTCTCCAGCGGCACCCTCAGCCCGGAGCTCGCCATTCAAGTTCTTGAGCAGTTTGATAAGTCTATGACGGAAGCCTTGGAGAACCAAGTCAAGAGCAAGGTTTCTATCAAGGGCCACCTGCACACTTACAGGTTCTGTGACAATGTATGGACATTCATCTTGACTGAAGCATCATTCAAGAACGAGGAGACTACAGAACAAGTTGGCAAGGTGAAGATTGTGGCCTGTGATTCCAAACTACTCAGCCAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| transcription factor IIA gamma subunit | transcription factor IIA gamma subunit [Oryza sativa Indica Group]. | MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPIR: PIRSF009415 IPR003194
|
1-106 | Transcription initiation factor IIA, gamma subunit Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ |
| HMMPanther: PTHR10966 IPR003194
|
1-106 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ |
| BlastProDom: PD009224 IPR015872
|
1-50 | Q7FPX2_ORYSA_Q7FPX2; Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALE |
| Gene3D: G3DSA:1.10.287.190 IPR015872
|
2-54 | no description Transcription initiation factor IIA, gamma subunit
|
ATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVK |
| HMMPfam: PF02268 IPR015872
|
3-50 | TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit
|
TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALE |
| superfamily: SSF47396 IPR009083
|
4-54 | Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA, helical
|
FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLEQFDKSMTEALENQVK |
| HMMPfam: PF02751 IPR015871
|
52-101 | TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit
|
QVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDS |
| superfamily: SSF50784 IPR009088
|
52-102 | Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA, beta-barrel
|
QVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK |
| Gene3D: G3DSA:2.30.18.10 IPR009088
|
55-104 | no description Transcription factor IIA, beta-barrel
|
SKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Bacterial Blight | Xanthomonas oryzae |
List of References
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