PRGDB00061451 (Xa13)

Xa13
Gene Type	Reference_R-Genes,_manually_curated
GenBank	89892339 (DQ421396)
Gene Class	Other
Domain Type
Chromosome	8
Gene Species	Oryza sativa Indica Group
	Comment?

Oryza sativa (indica cultivar-group) cultivar IR24 disease resistant allele XA13 (Xa13) gene, complete cds.

DNA Sequence

ATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGCTGCGGCGTCGAGGCCGCCTACATCGTCCTCTACCTCGTCTACGCGCCGCGCCGCGCCAGGCTCCGCACCCTCGCCTTCTTCCTCCTCCTCGACGTCGCCGCCTTCGCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTATGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGTCCGACTCCATGTCCCCGATCTCCGCCGCCGCCGCCGCCACGCAGAGGGTGATCGAGCTCCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGATCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGCCGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGA

Protein sequences

Name	Description	Sequence
disease resistant allele XA13	disease resistant allele XA13 [Oryza sativa Indica Group].	MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKSTGGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRARLRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRKPRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAAEQAADGVAAAAAADKELLQNKPEVIEITAAV

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10791 IPR004316	8-303	RAG1-ACTIVATING PROTEIN 1 RAG1-activating protein-1-related	MANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKSTGGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRARLRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRKPRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAAEQAADGVAAAAAADKELLQNKPEVIEI
HMMPfam: PF03083 IPR004316	17-100	MtN3_slv RAG1-activating protein-1-related	GVAGNIISFLVFLAPVATFLQVYKKKSTGGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRR
Seg: seg	99-122	seg	RRARLRTLAFFLLLDVAAFALIVV
HMMPfam: PF03083 IPR004316	136-219	MtN3_slv RAG1-activating protein-1-related	FLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRKP
Seg: seg	271-290	seg	VEVVAAEQAADGVAAAAAAD

Diseases

Disease	Pathogen	Avirulence gene
Bacterial Blight	Xanthomonas oryzae

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Analyses

Blast

Blast matches against Reference R-Genes. Show