PRGDB00061451 (Xa13)

Xa13
Gene Type	Reference_R-Genes,_manually_curated
GenBank	89892339 (DQ421396)
Gene Class	Other
Domain Type
Chromosome	8
Gene Species	Oryza sativa Indica Group
	Comment?

Oryza sativa (indica cultivar-group) cultivar IR24 disease resistant allele XA13 (Xa13) gene, complete cds.

DNA Sequence

ATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGCTGCGGCGTCGAGGCCGCCTACATCGTCCTCTACCTCGTCTACGCGCCGCGCCGCGCCAGGCTCCGCACCCTCGCCTTCTTCCTCCTCCTCGACGTCGCCGCCTTCGCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTATGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGTCCGACTCCATGTCCCCGATCTCCGCCGCCGCCGCCGCCACGCAGAGGGTGATCGAGCTCCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGATCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGCCGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGA

Protein sequences

Name	Description	Sequence
disease resistant allele XA13	disease resistant allele XA13 [Oryza sativa Indica Group].	MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKSTGGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRARLRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRKPRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAAEQAADGVAAAAAADKELLQNKPEVIEITAAV

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10791 IPR004316	8-303	RAG1-ACTIVATING PROTEIN 1 RAG1-activating protein-1-related	MANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKSTGGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRRARLRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRKPRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAAEQAADGVAAAAAADKELLQNKPEVIEI
HMMPfam: PF03083 IPR004316	17-100	MtN3_slv RAG1-activating protein-1-related	GVAGNIISFLVFLAPVATFLQVYKKKSTGGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRR
Seg: seg	99-122	seg	RRARLRTLAFFLLLDVAAFALIVV
HMMPfam: PF03083 IPR004316	136-219	MtN3_slv RAG1-activating protein-1-related	FLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNVGGFFFSCVQMGLYFWYRKP
Seg: seg	271-290	seg	VEVVAAEQAADGVAAAAAAD

Diseases

Disease	Pathogen	Avirulence gene
Bacterial Blight	Xanthomonas oryzae

List of References

Zhaohui Chu, Meng Yuan, Jialing Yao, Xiaojia Ge, Bin Yuan, Caiguo Xu, Xianghua Li, Binying Fu, Zhikang Li, Jeffrey L Bennetzen, Qifa Zhang, Shiping Wang
Promoter mutations of an essential gene for pollen development result in disease resistance in rice.
Genes Dev.: 2006, 20(10);1250-5
PubMed:16648463 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show