PRGDB00061452 (IVR)

IVR
Gene Type	Reference_R-Genes,_manually_curated
GenBank	3355639 (AJ009684)
Gene Class	Other
Domain Type
Gene Species	Nicotiana tabacum
	Comment?

Nicotiana tabacum mRNA for inhibitor of virus replication (IVR)-like protein.

DNA Sequence

ATGAATCGACCTGAAGCTGCTGTGGTTGCCTTTAGAGGAGCTCAAGAGTTGAGACCTGATCTTCGTTCTTATCAAGGTTTAGTACGCTCTTATTTAGCAATTTCAAAGATCAAGGAGGCACTGCATGCTGCAAGGGAGGCAATGAAGGCCATGCCACAGTCAGCAAAAGCTCTAAAATTGGTGGGTGATGTACATGCTAGTAATACTAGTGGGAGGGAAAAGGCAAAGAAGTTCTATGAATCTTCACTAAGGCTGGAACCTGGTTATCTTGGAGCAGCGCTAGCCTTGGCAGAACTGCATGTCATTGAAGGTCGAACTGTAGATGCTGTTACTCTCCTTGAGCGGTATCTCAAGGATTGGGCTGATGACTCGTTGCATGTTAAGCTTGCCCAAGTATTTGCTGCAACAAATATGCCACAAGATGCCTTGTCACACTACCAGGCAGCACTGAGGATAAATCCCCAAAATGAAGCTGCAAAGAAAGGGTTGGGAGCGCCTGGAGAAGCAGCTCAAGGGAGTAGATCTGATGCTCCTGAAGAAGATGAAGAGAATGATGCTGAGGATGCTGATGCAGACCAGGAAGAGGCTGAGCTTTTATGA

Protein sequences

Name	Description	Sequence
IVR-like protein	IVR-like protein [Nicotiana tabacum].	MNRPEAAVVAFRGAQELRPDLRSYQGLVRSYLAISKIKEALHAAREAMKAMPQSAKALKLVGDVHASNTSGREKAKKFYESSLRLEPGYLGAALALAELHVIEGRTVDAVTLLERYLKDWADDSLHVKLAQVFAATNMPQDALSHYQAALRINPQNEAAKKGLGAPGEAAQGSRSDAPEEDEENDAEDADADQEEAELL

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR12558:SF8	1-197	PTHR12558:SF8,ANAPHASE PROMOTING COMPLEX SUBUNIT 7	MNRPEAAVVAFRGAQELRPDLRSYQGLVRSYLAISKIKEALHAAREAMKAMPQSAKALKLVGDVHASNTSGREKAKKFYESSLRLEPGYLGAALALAELHVIEGRTVDAVTLLERYLKDWADDSLHVKLAQVFAATNMPQDALSHYQAALRINPQNEAAKKGLGAPGEAAQGSRSDAPEEDEENDAEDADADQEEAE
HMMPanther: PTHR12558	1-197	PTHR12558,CELL DIVISION CYCLE 16	MNRPEAAVVAFRGAQELRPDLRSYQGLVRSYLAISKIKEALHAAREAMKAMPQSAKALKLVGDVHASNTSGREKAKKFYESSLRLEPGYLGAALALAELHVIEGRTVDAVTLLERYLKDWADDSLHVKLAQVFAATNMPQDALSHYQAALRINPQNEAAKKGLGAPGEAAQGSRSDAPEEDEENDAEDADADQEEAE
ProfileScan: PS50293 IPR013026	1-21	TPR_REGION Tetratricopeptide repeat-containing domain	MNRPEAAVVAFRGAQELRPDL
superfamily: SSF48452	1-162	SSF48452	MNRPEAAVVAFRGAQELRPDLRSYQGLVRSYLAISKIKEALHAAREAMKAMPQSAKALKLVGDVHASNTSGREKAKKFYESSLRLEPGYLGAALALAELHVIEGRTVDAVTLLERYLKDWADDSLHVKLAQVFAATNMPQDALSHYQAALRINPQNEAAKKG
Gene3D: G3DSA:1.25.40.10 IPR011990	2-164	TPR-like_helical Tetratricopeptide-like helical	NRPEAAVVAFRGAQELRPDLRSYQGLVRSYLAISKIKEALHAAREAMKAMPQSAKALKLVGDVHASNTSGREKAKKFYESSLRLEPGYLGAALALAELHVIEGRTVDAVTLLERYLKDWADDSLHVKLAQVFAATNMPQDALSHYQAALRINPQNEAAKKGLG
ProfileScan: PS50005 IPR019734	21-54	TPR Tetratricopeptide repeat	LRSYQGLVRSYLAISKIKEALHAAREAMKAMPQS
ProfileScan: PS50293 IPR013026	21-156	TPR_REGION Tetratricopeptide repeat-containing domain	LRSYQGLVRSYLAISKIKEALHAAREAMKAMPQSAKALKLVGDVHASNTSGREKAKKFYESSLRLEPGYLGAALALAELHVIEGRTVDAVTLLERYLKDWADDSLHVKLAQVFAATNMPQDALSHYQAALRINPQN
ProfileScan: PS50005 IPR019734	123-156	TPR Tetratricopeptide repeat	DSLHVKLAQVFAATNMPQDALSHYQAALRINPQN
HMMPfam: PF07719 IPR013105	126-156	TPR_2 Tetratricopeptide TPR2	HVKLAQVFAATNMPQDALSHYQAALRINPQN

Diseases

Disease	Pathogen	Avirulence gene
Tobacco Mosaic Virus	Tobacco mosaic virus

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Analyses

Blast

Blast matches against Reference R-Genes. Show