PRGDB00061454 (Pikm2-TS)

Pikm2-TS
Gene Type	Reference_R-Genes,_manually_curated
GenBank	207367331 (AB462325)
Gene Class	CNL
Domain Type	NBS, LRR, Others
Chromosome	11
Gene Species	Oryza sativa Japonica Group
	Comment?

Oryza sativa Japonica Group Pikm2-TS mRNA for NBS-LRR class disease resistance protein, complete cds.

DNA Sequence

ATGGAGTTGGTGGTAGGTGCTTCCGAAGCCACCATGAAATCTCTCTTGGGCAAGCTGGGCAATCTTCTAGCCCAGGAGTATGCTCTCATCAGCGGTATCCGTGGTGACATCCAGTACATCAATGACGAGCTTGCCAGCATGCAGGCCTTCCTCCGTGATCTCAGCAACGTGCCAGAGGGTCACAGTCATGGCCACCGGATGAAGGACTGGATGAAGCAGATCCGAGACATCGCCTATGATGTTGAGGACTGTATCGATGACTTTGCCCACCGCCTCCCTCAGGATTCCATCAGCGATGCCAAATGGTCCTTCCTACTCACAAAAATCTATGAACTATGGACATGGTGGCCACGTCGTGTGATTGCTTCCAACATTGCCCAACTCAAGGTACGGGCACAACAGATCGCAGATCGACGTAGTAGATACGGAGTGAACAACCCAGAACACCTTGACAGTAGCAGCAGTGCCAGGACCCGTGCTGTCAATTACGAAATTGCTGAGTATCAGGTCACAAGCCCTCAGATCATTGGTATAAAGGAGCCTGTGGGGATGAAGACGGTCATGGAGGAGCTTGAGGTTTGGTTAACTAATCCTCAAGCTGAAAATGGGCAAGCTGTTCTGTCCATAGTCGGTTTTGGAGGTGTGGGAAAGACTACCATTGCCACAGCATTGTACAGAAAAGTCAGTGAAAAATTTCAGTGCCGGGCATCAGTAGCTGTGTCTCAGAACTATGACCAAGGCAAAGTCCTCAATAGTATTCTGAGTCAAGTCAGCAATCAGGAGCAGGGCAGCAGCACAACAATTAGTGAGAAAAAGAACCTCACCTCAGGCGCTAAGAGCATGTTGAAGACAGCCCTGTCACTGCTCAGAGGTAATTGTATATGTCAGCCAGAAAATGATGGAAACCCTGATAATACACCAATCAGGCTGCAGGAAACAACGGACGATGATCAAAACCCCAGAAAACTGGAACAGCTCCTGGCCGAAAAGAGTTATATCCTCTTGATTGATGACATTTGGTCTGCCGAAACATGGGAGAGTATCAGATCGATTTTGCCTAAAAATAATAAAGGCGGTAGAATAATAGTGACTACAAGATTTCAAGCTGTTGGTTCAACATGCTCCCCTCTTGAAACTGATCGTTTGCATACAGTTGATTTTCTCACCGATGACGAGTCCCAAAACTTATTCAATACAAGTATTTGTGAATCAAAGATAAGAAAAGATAGCAACAAAGTAGACGAGCAAGTCCCTGAGGAAATATGGAAAATATGTGGGGGATTGCCTTTGGCCATAGTCAGCATGGCTGGTCTTGTCGCCTGCAACCCAAGGAAAGCCTGCTGCGATTGGAGTAAACTTTGCAAATCATTATTTCCAGAGCAAGAAACTCCTCTTACCCTCGATGGTGTTACAAGGATACTGGATTGTTGTTACAATGATTTGCCTGCGGATCTGAAGACTTGCTTATTGTACTTGAGTATATTTCCGAAGGGTTGGAAAATTAGTAGGAAACGTTTGTCCCGGCGATGGATAGCTGAAGGTTTTGCTAATGAGAAGCAAGGGTTAACCCAGGAAAGAGTTGCAGAGGCATACTTTAATCAACTCACAAGAAGGAACTTAGTACGTCCCATGGAGCATGGCAGCAATGGGAAGGTAAAAACGTTTCAAGTTCATGACATGGTTCTTGAATACATCATGTCCAAATCAATCGAAGAGAATTTTATTACTGTGGTTGGTGGACACTGGCAGATGACTGCACCAAGCAATAAAGTCCGTCGACTGTCGATGCAAAGCAGTGGATCCAATCGTGGAAGTTCAACAAAAGGCCTGAACTTGGCTCAAGTGAGATCACTGACGGTGTTTGGGAACCTGAACCATGTGCCATTCCATTCATTCAACTATGGGATAATACAGGTGCTGGATCTTGAGGACTGGAAGGGTTTGAAAGAGAGACATATGACGGAGATATGTCAAATGCTTTTACTCAAGTATTTGAGCATCCGACGAACAGAAATTTCCAAAATTCCCTCCAAGATTCAGAAACTTGAGTACTTGGAAACTCTTGACATAAGGGAGACATATGTCAGGGACCTGCCTAAGTCAATAGTCCAGCTAAAACGGATCATTAGCATACTTGGAGGGAATAAAAACACACGGAAGGGGCTGAGGTTGCCTCAAGAAAAAAGTAAGAAGCCAATTAAAAACCCGTCGCCTCAAGGAAAAACAAAGGAGCCCGCAAAGAAAGGATTCTTATCCCAAGAAAAAGGTAAAGGCGCAATGAAAGCACTCCGTGTACTGTCAGGGATTGAGATTGTTGAGGAATCATCAGAAGTAGCTGCAGGCCTTCATCAGTTGACAGGGCTAAGGAAGCTTGCCATATACAAGCTCAATATAACAAAGGGTGGTGATACCTTCAAACAATTACAGTCCTCCATTGAGTACCTTGGCAGCTGTGGTCTGCAGACTCTGGCCATCAATGATGAGAATTCTGAATTTATCAACTCACTGGGCGACATGCCCGCGCCTCCAAGATATCTTGTCGCCCTTGAGCTGTCTGGCAAGTTGGAGAAGCTACCCAAGTGGATCACCAGCATCACTACTCTCAACAAGCTAACCATATCTGTAACAGTTCTTAGGACTGAAACTTTGGAGATCCTCCACATTTTACCTTCATTGTTTTCCCTCACCTTCGCCTTTTCACTTAGTGCAGCGAAGCAGGATCAGGACATAATAAAGGACATCCTTGAGAATAATAAATTGGACAGTGATGGGGAAATCGTCATTCCAGCTGAAGGATTCAAGAGTCTTAAGCTGCTTCGCTTCTTTGCACCTTTAGTGCCGAAGCTCAGCTTTTTGGACAAGAATGCAATGCCAGCACTCGAAATCATTGAAATGCGGTTTAAAGACTTCGAAGGTCTATTTGGCATCGAAATCCTTGAAAATCTCCGTGAGGTGCATCTCAAAGTTAGTGATGGGGCAGAAGCAATAACCAAGTTCCTTGTAAATGATTTGAAGGTTAATACTGAGAAACCAAAAGTATTTGTTGATGGCATCGTCACTGCATGA

Protein sequences

Name	Description	Sequence
NBS-LRR class disease resistance protein	NBS-LRR class disease resistance protein [Oryza sativa Japonica Group].	MELVVGASEATMKSLLGKLGNLLAQEYALISGIRGDIQYINDELASMQAFLRDLSNVPEGHSHGHRMKDWMKQIRDIAYDVEDCIDDFAHRLPQDSISDAKWSFLLTKIYELWTWWPRRVIASNIAQLKVRAQQIADRRSRYGVNNPEHLDSSSSARTRAVNYEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEKQGLTQERVAEAYFNQLTRRNLVRPMEHGSNGKVKTFQVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHLKVSDGAEAITKFLVNDLKVNTEKPKVFVDGIVTA

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	8-987	FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	SEATMKSLLGKLGNLLAQEYALISGIRGDIQYINDELASMQAFLRDLSNVPEGHSHGHRMKDWMKQIRDIAYDVEDCIDDFAHRLPQDSISDAKWSFLLTKIYELWTWWPRRVIASNIAQLKVRAQQIADRRSRYGVNNPEHLDSSSSARTRAVNYEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEKQGLTQERVAEAYFNQLTRRNLVRPMEHGSNGKVKTFQVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHL
HMMPanther: PTHR23155:SF220	8-987	OS11G0689100 PROTEIN,OS11G0689100 PROTEIN	SEATMKSLLGKLGNLLAQEYALISGIRGDIQYINDELASMQAFLRDLSNVPEGHSHGHRMKDWMKQIRDIAYDVEDCIDDFAHRLPQDSISDAKWSFLLTKIYELWTWWPRRVIASNIAQLKVRAQQIADRRSRYGVNNPEHLDSSSSARTRAVNYEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEKQGLTQERVAEAYFNQLTRRNLVRPMEHGSNGKVKTFQVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHL
superfamily: SSF52540	163-441	P-loop containing nucleoside triphosphate hydrolases	YEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVAC
HMMPfam: PF00931 IPR002182	187-519	NB-ARC,NBS NB-ARC	VMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEK
FPrintScan: PR00364 IPR000767	206-221	DISEASERSIST Disease resistance protein	VLSIVGFGGVGKTTIA
Gene3D: G3DSA:3.40.50.300	317-366	no description	DQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTR
FPrintScan: PR00364 IPR000767	425-439	DISEASERSIST Disease resistance protein	CGGLPLAIVSMAGLV
superfamily: SSF52058	556-987	L domain-like,LRR	QVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHL
Seg: seg	595-609	seg	SMQSSGSNRGSSTKG
FPrintScan: PR00364 IPR000767	680-696	DISEASERSIST Disease resistance protein	QKLEYLETLDIRETYVR
Seg: seg	768-781	seg	GIEIVEESSEVAAG
Gene3D: G3DSA:3.80.10.10	775-898	no description	SSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFA
Seg: seg	891-904	seg	SLFSLTFAFSLSAA

Diseases

Disease	Pathogen	Avirulence gene
Rice blast disease	Magnaporthe grisea

List of References

Ikuo Ashikawa, Nagao Hayashi, Hiroko Yamane, Hiroyuki Kanamori, Jianzhong Wu, Takashi Matsumoto, Kazuko Ono, Masahiro Yano
Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance.
Genetics: 2008, 180(4);2267-76
PubMed:18940787 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show