PRGDB00061454 (Pikm2-TS)
| Pikm2-TS | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 207367331 (AB462325) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, Others |
| Chromosome | 11 |
| Gene Species | Oryza sativa Japonica Group |
DNA Sequence
ATGGAGTTGGTGGTAGGTGCTTCCGAAGCCACCATGAAATCTCTCTTGGGCAAGCTGGGCAATCTTCTAGCCCAGGAGTATGCTCTCATCAGCGGTATCCGTGGTGACATCCAGTACATCAATGACGAGCTTGCCAGCATGCAGGCCTTCCTCCGTGATCTCAGCAACGTGCCAGAGGGTCACAGTCATGGCCACCGGATGAAGGACTGGATGAAGCAGATCCGAGACATCGCCTATGATGTTGAGGACTGTATCGATGACTTTGCCCACCGCCTCCCTCAGGATTCCATCAGCGATGCCAAATGGTCCTTCCTACTCACAAAAATCTATGAACTATGGACATGGTGGCCACGTCGTGTGATTGCTTCCAACATTGCCCAACTCAAGGTACGGGCACAACAGATCGCAGATCGACGTAGTAGATACGGAGTGAACAACCCAGAACACCTTGACAGTAGCAGCAGTGCCAGGACCCGTGCTGTCAATTACGAAATTGCTGAGTATCAGGTCACAAGCCCTCAGATCATTGGTATAAAGGAGCCTGTGGGGATGAAGACGGTCATGGAGGAGCTTGAGGTTTGGTTAACTAATCCTCAAGCTGAAAATGGGCAAGCTGTTCTGTCCATAGTCGGTTTTGGAGGTGTGGGAAAGACTACCATTGCCACAGCATTGTACAGAAAAGTCAGTGAAAAATTTCAGTGCCGGGCATCAGTAGCTGTGTCTCAGAACTATGACCAAGGCAAAGTCCTCAATAGTATTCTGAGTCAAGTCAGCAATCAGGAGCAGGGCAGCAGCACAACAATTAGTGAGAAAAAGAACCTCACCTCAGGCGCTAAGAGCATGTTGAAGACAGCCCTGTCACTGCTCAGAGGTAATTGTATATGTCAGCCAGAAAATGATGGAAACCCTGATAATACACCAATCAGGCTGCAGGAAACAACGGACGATGATCAAAACCCCAGAAAACTGGAACAGCTCCTGGCCGAAAAGAGTTATATCCTCTTGATTGATGACATTTGGTCTGCCGAAACATGGGAGAGTATCAGATCGATTTTGCCTAAAAATAATAAAGGCGGTAGAATAATAGTGACTACAAGATTTCAAGCTGTTGGTTCAACATGCTCCCCTCTTGAAACTGATCGTTTGCATACAGTTGATTTTCTCACCGATGACGAGTCCCAAAACTTATTCAATACAAGTATTTGTGAATCAAAGATAAGAAAAGATAGCAACAAAGTAGACGAGCAAGTCCCTGAGGAAATATGGAAAATATGTGGGGGATTGCCTTTGGCCATAGTCAGCATGGCTGGTCTTGTCGCCTGCAACCCAAGGAAAGCCTGCTGCGATTGGAGTAAACTTTGCAAATCATTATTTCCAGAGCAAGAAACTCCTCTTACCCTCGATGGTGTTACAAGGATACTGGATTGTTGTTACAATGATTTGCCTGCGGATCTGAAGACTTGCTTATTGTACTTGAGTATATTTCCGAAGGGTTGGAAAATTAGTAGGAAACGTTTGTCCCGGCGATGGATAGCTGAAGGTTTTGCTAATGAGAAGCAAGGGTTAACCCAGGAAAGAGTTGCAGAGGCATACTTTAATCAACTCACAAGAAGGAACTTAGTACGTCCCATGGAGCATGGCAGCAATGGGAAGGTAAAAACGTTTCAAGTTCATGACATGGTTCTTGAATACATCATGTCCAAATCAATCGAAGAGAATTTTATTACTGTGGTTGGTGGACACTGGCAGATGACTGCACCAAGCAATAAAGTCCGTCGACTGTCGATGCAAAGCAGTGGATCCAATCGTGGAAGTTCAACAAAAGGCCTGAACTTGGCTCAAGTGAGATCACTGACGGTGTTTGGGAACCTGAACCATGTGCCATTCCATTCATTCAACTATGGGATAATACAGGTGCTGGATCTTGAGGACTGGAAGGGTTTGAAAGAGAGACATATGACGGAGATATGTCAAATGCTTTTACTCAAGTATTTGAGCATCCGACGAACAGAAATTTCCAAAATTCCCTCCAAGATTCAGAAACTTGAGTACTTGGAAACTCTTGACATAAGGGAGACATATGTCAGGGACCTGCCTAAGTCAATAGTCCAGCTAAAACGGATCATTAGCATACTTGGAGGGAATAAAAACACACGGAAGGGGCTGAGGTTGCCTCAAGAAAAAAGTAAGAAGCCAATTAAAAACCCGTCGCCTCAAGGAAAAACAAAGGAGCCCGCAAAGAAAGGATTCTTATCCCAAGAAAAAGGTAAAGGCGCAATGAAAGCACTCCGTGTACTGTCAGGGATTGAGATTGTTGAGGAATCATCAGAAGTAGCTGCAGGCCTTCATCAGTTGACAGGGCTAAGGAAGCTTGCCATATACAAGCTCAATATAACAAAGGGTGGTGATACCTTCAAACAATTACAGTCCTCCATTGAGTACCTTGGCAGCTGTGGTCTGCAGACTCTGGCCATCAATGATGAGAATTCTGAATTTATCAACTCACTGGGCGACATGCCCGCGCCTCCAAGATATCTTGTCGCCCTTGAGCTGTCTGGCAAGTTGGAGAAGCTACCCAAGTGGATCACCAGCATCACTACTCTCAACAAGCTAACCATATCTGTAACAGTTCTTAGGACTGAAACTTTGGAGATCCTCCACATTTTACCTTCATTGTTTTCCCTCACCTTCGCCTTTTCACTTAGTGCAGCGAAGCAGGATCAGGACATAATAAAGGACATCCTTGAGAATAATAAATTGGACAGTGATGGGGAAATCGTCATTCCAGCTGAAGGATTCAAGAGTCTTAAGCTGCTTCGCTTCTTTGCACCTTTAGTGCCGAAGCTCAGCTTTTTGGACAAGAATGCAATGCCAGCACTCGAAATCATTGAAATGCGGTTTAAAGACTTCGAAGGTCTATTTGGCATCGAAATCCTTGAAAATCTCCGTGAGGTGCATCTCAAAGTTAGTGATGGGGCAGAAGCAATAACCAAGTTCCTTGTAAATGATTTGAAGGTTAATACTGAGAAACCAAAAGTATTTGTTGATGGCATCGTCACTGCATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| NBS-LRR class disease resistance protein | NBS-LRR class disease resistance protein [Oryza sativa Japonica Group]. | MELVVGASEATMKSLLGKLGNLLAQEYALISGIRGDIQYINDELASMQAFLRDLSNVPEGHSHGHRMKDWMKQIRDIAYDVEDCIDDFAHRLPQDSISDAKWSFLLTKIYELWTWWPRRVIASNIAQLKVRAQQIADRRSRYGVNNPEHLDSSSSARTRAVNYEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEKQGLTQERVAEAYFNQLTRRNLVRPMEHGSNGKVKTFQVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHLKVSDGAEAITKFLVNDLKVNTEKPKVFVDGIVTA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 8-987 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | SEATMKSLLGKLGNLLAQEYALISGIRGDIQYINDELASMQAFLRDLSNVPEGHSHGHRMKDWMKQIRDIAYDVEDCIDDFAHRLPQDSISDAKWSFLLTKIYELWTWWPRRVIASNIAQLKVRAQQIADRRSRYGVNNPEHLDSSSSARTRAVNYEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEKQGLTQERVAEAYFNQLTRRNLVRPMEHGSNGKVKTFQVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHL |
| HMMPanther: PTHR23155:SF220 | 8-987 | OS11G0689100 PROTEIN,OS11G0689100 PROTEIN | SEATMKSLLGKLGNLLAQEYALISGIRGDIQYINDELASMQAFLRDLSNVPEGHSHGHRMKDWMKQIRDIAYDVEDCIDDFAHRLPQDSISDAKWSFLLTKIYELWTWWPRRVIASNIAQLKVRAQQIADRRSRYGVNNPEHLDSSSSARTRAVNYEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEKQGLTQERVAEAYFNQLTRRNLVRPMEHGSNGKVKTFQVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHL |
| superfamily: SSF52540 | 163-441 | P-loop containing nucleoside triphosphate hydrolases | YEIAEYQVTSPQIIGIKEPVGMKTVMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVAC |
| HMMPfam: PF00931 IPR002182
|
187-519 | NB-ARC,NBS NB-ARC
|
VMEELEVWLTNPQAENGQAVLSIVGFGGVGKTTIATALYRKVSEKFQCRASVAVSQNYDQGKVLNSILSQVSNQEQGSSTTISEKKNLTSGAKSMLKTALSLLRGNCICQPENDGNPDNTPIRLQETTDDDQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTRFQAVGSTCSPLETDRLHTVDFLTDDESQNLFNTSICESKIRKDSNKVDEQVPEEIWKICGGLPLAIVSMAGLVACNPRKACCDWSKLCKSLFPEQETPLTLDGVTRILDCCYNDLPADLKTCLLYLSIFPKGWKISRKRLSRRWIAEGFANEK |
| FPrintScan: PR00364 IPR000767
|
206-221 | DISEASERSIST Disease resistance protein
|
VLSIVGFGGVGKTTIA |
| Gene3D: G3DSA:3.40.50.300 | 317-366 | no description | DQNPRKLEQLLAEKSYILLIDDIWSAETWESIRSILPKNNKGGRIIVTTR |
| FPrintScan: PR00364 IPR000767
|
425-439 | DISEASERSIST Disease resistance protein
|
CGGLPLAIVSMAGLV |
| superfamily: SSF52058 | 556-987 | L domain-like,LRR | QVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSMQSSGSNRGSSTKGLNLAQVRSLTVFGNLNHVPFHSFNYGIIQVLDLEDWKGLKERHMTEICQMLLLKYLSIRRTEISKIPSKIQKLEYLETLDIRETYVRDLPKSIVQLKRIISILGGNKNTRKGLRLPQEKSKKPIKNPSPQGKTKEPAKKGFLSQEKGKGAMKALRVLSGIEIVEESSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFAFSLSAAKQDQDIIKDILENNKLDSDGEIVIPAEGFKSLKLLRFFAPLVPKLSFLDKNAMPALEIIEMRFKDFEGLFGIEILENLREVHL |
| Seg: seg | 595-609 | seg | SMQSSGSNRGSSTKG |
| FPrintScan: PR00364 IPR000767
|
680-696 | DISEASERSIST Disease resistance protein
|
QKLEYLETLDIRETYVR |
| Seg: seg | 768-781 | seg | GIEIVEESSEVAAG |
| Gene3D: G3DSA:3.80.10.10 | 775-898 | no description | SSEVAAGLHQLTGLRKLAIYKLNITKGGDTFKQLQSSIEYLGSCGLQTLAINDENSEFINSLGDMPAPPRYLVALELSGKLEKLPKWITSITTLNKLTISVTVLRTETLEILHILPSLFSLTFA |
| Seg: seg | 891-904 | seg | SLFSLTFAFSLSAA |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Rice blast disease | Magnaporthe grisea |
List of References
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