PRGDB00061456 (Rdg2a)
| Rdg2a | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 301015479 (HM124452) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, Others |
| Chromosome | 1 |
| Gene Species | Hordeum vulgare subsp. vulgare |
DNA Sequence
ATGGCAGAGTCACTCCTTCTCCCTCTAGTGCGCGGCGTGGCCGGCAAGGCTGCAGATGCACTTGTCGAGACGGTGACCCGCATGTGTGGCCTCGACGACGACCGTCAAACGCTCGAACGGCATCTACTAGCCGTCGAGTGCAAGCTGGTCAACGCTGAGGAGATGAGCGAGACAAATCGCTATGTCAAGAGCTGGATGAAGGAGCTCAAGTCCGTCGCCTACCTGGCCGACGACGTGCTCGACGACTTCCAGTATGAGGCACTGCGCCGTGAGTCAAAGATTGGCAAGTCCACTACCCGAAAGGCACTCAGCTACATCACGCGCCACAGCCCGCTGCTCTTCCGTTTTGAAATGAGCAGGAAACTCAAGAACGTCCTTAAGAAGATCAATAAGTTGGTTAAGGAGATGAACACGTTTGGCCTGGAGAGTTCTGTCCGTAGGGAGGAGCGGCAACATCCTTGGCGGCAGACGCACTCAAAACTGGACGAAACTACCCAGATCTTTGGAAGGGAAGATGATAAGGAAGTGGTGGTGAAGTTGCTGCTGGACCAGCAGGATCAGCGGAGGGTGCAGGTGCTGCCCATCATTGGGATGGGAGGTCTTGGCAAGACGACTCTTGCTAAGATGGTCTATAATGACCAAGGGGTCGAGCAACATTTCGAGTTGAAGATGTGGCACTGCGTGTCAGACAACTTTGATGCCATTGCTCTTTTGAAATCCATCATTGAGTTGGCTACAAATGGAAGTTGTGACCTGCCTGGCAGCATCGAACTATTGCAAAAGAAACTTGAGCAAGTCATTGGCCAAAAAAGGTTCATGCTCGTGCTTGATGATGTATGGAATGAAGATGAGAGGAAGTGGGGGGATGTCCTGAAGCCACTATTGTGTTCTGTTGGTGGACCAGGAAGTGTTATATTGGTCACATGTCGAAGCAAGCAAGTCGCCTCGATAATGTGCACCGTTACGCCCCATGAGCTAGTATTTCTGAATGAGGAAGATTCATGGGAATTGTTTTCAGACAAAGCGTTTAGCAATGGTGTAGAGGAGCAAGCAGAGTTGGTCAGCATCGGAAGGCGTATTGTCAACAAATGCGGGGGGTTGCCTCTTGCTCTCAAGACAATGGGTGGATTGCTGAGTTCAAAGCAAAAGGTACAGGAATGGAAGGCCATCGAAGAAAGTAACATCGGGGATAAAGATGGAGGCAAATATGAGGTCATGCACATACTGAAGTTAAGCTACAAACACCTGTCGCCTGAAATGAAGCAATGTTTTGCATTCTGTGCAGTTTTTCCCAAGGATTATGAGATGGAGAAGGATAGGTTGATCCAACTATGGATGGCAAATGGCTTTATTCAACACAAGGGAACAATGGATTTAGTACAGAAAGGAGAATTAATTTTTGATGAGTTGGTTTGGAGGTCCTTCCTCCAAGATAAGAAAGTGGCAGTCAGATTTACTAGCTATCGTGGTAACAAAATATATGAGACAATTGTATGTAAAATGCATGATTTAATGCATGATCTAGCAAAAGATGTCACAGATGAATGTGCAAGTATAGAAGAAGTGACTCAGCAGAAAACATTGTTAAAAGATGTTTGTCACATGCAAGTGTCAAAGACTGAATTGGAACAAATCAGTGGGTTATGCAAAGGCAGAACAATCCTACGCACTTTGTTAGTTCCTTCAGGATCACACAAGGATTTTAAAGAGTTGCTACAGGTATCGGCATCACTAAGAGCATTGTGTTGGCCCTCTTATTCAGTTGTCATTTCCAAGGCCATAAATGCAAAACATTTACGGTATCTTGACCTCTCTGGGTCAGACATTGTTAGATTGCCAGATTCAATATGGGTGTTGTATAACCTGCAAACACTGAGGCTAATGGATTGCCGGAAGTTGCGACAGTTACCAGAAGACATGGCAAGATTAAGAAAGCTCATCCATCTTTACCTTTCTGGCTGTGAGAGTCTCAAAAGTATGTCTCCAAACTTTGGTCTGCTGAACAACCTTCACATATTAACAACATTTGTTGTGGGTACCGGAGATGGCCTTGGAATAGAGCAGCTCAAAGATTTGCAAAACCTTAGCAATAGGTTGGAAATATTGAATATGGACAAGATAAAGAGTGGGGAGAATGCAAAAGAAGCCAATCTCAGTCAGAAGCAAAATCTAAGTGAGTTGTTGTTCTCTTGGGGCCAAAAAATAGATGATGAGCCTACAGATGTGGAAGAAGTGCTTCAGGGCTTAGAACCTCATAGTAATATCCAAAAACTGGAGATACGTGGATATCATGGCCTAGAAATATCACAATGGATGAGAAAGCCTCAGATGTTTGACTGCTTGAGAGAACTCGAAATGTTTGGCTGCCCAAAATGCAAGAGTATCCCTGTAATATGGTTCTCGGTCTCTCTAGAGATTTTGGTCTTACAGAGCATGGATAACCTGACAACATTATGTAGTAACCTTGGTGTGGAAGCTGGAGGAAGCATTACCCCTCTGCAACTTTTCCCAAATTTGAAGAAGTTGTGTTTGATTAAGTTACCAAGCCTGGAGATATGGGCAGAAAATAGTGTAGGAGAGCCTCGGATGTTTAGCAGTTTGGAAAAACTCGAAATTTCCGACTGCCCAAGATGCAAGAGTATACCTGCAGTATGGTTTTCGGTCTCTCTTGAGTTTTTGGTCTTACGGAAAATGGATAACCTGACAACATTATGTAATAACCTTGATGTGGAAGCTGGAGGATGCATTACCCCTATGCAGATTTTCCCAAGGTTGAAGAAGATGAGGTTGATTGAGTTACCAAGCCTGGAGATGTGGGCAGAAAATAGTATGGGAGAGCCTAGTTGTGATAACCTGGTAACATTCCCGATGCTTGAAGAGCTAGAGATCAAAAATTGCCCCAAGCTTGCAAGTATTCCAGCGATTCCCGTTGTCAGCGAGTTGAGAATAGTTGGAGTTCACAGTACTGCAGTCGGTTCAGTTTTTATGAGCATCCGTTTGGGCTCCTGGCCATTTCTCGTCAGGTTAAGTCTTGGGTCTCTAGAAGACATACCCATGTTGCCTCTAGACGCCCAGCAAAACCAAAGTGAAAGACCTCTTGAAAAGCTTGAGAGTTTGACTCTGGAAGGGCCCAACAGCTTGATCAGAAGCTCTGGATTGTCCGGATCACAACTTATGGTTTGGAAATGTTTTCGGTTCGTGCGAGATCTGATGATTGATGGTTGCAGCAATCTTGTCCGCTGGCCAACAGTGGAGCTCTGGTGCATGGATCGCCTCTGCATTCTGTGTATCACAAATTGTGACTACCTGAAGGGGAACATTTCATCATCCGAGGAGAAAACCCTTCCGCTGTCCCTGGAGCATTTGACGATTCAGAACTGCCGCAGTGTAGTAGCACTGCCTTCGAACCTTGGGAAACTGGCCAAGCTGAGGAGTCTCTATGTGAGCGACTGCAGGAGCCTGAAAGTGCTGCCTGATGGGATGTGTGGCCTCACTTCTCTGAGGGAATTGGAGATTTGGGGTTGTCCAGGTATGGAGGAATTCCCGCATGGTCTCCTGGAGCGGTTGCCAGCCCTCGAATACTGTAGCATCCATCTCTGCCCGGAGTTGCAAAGACGATGCAGAGAAGGTGGGGAGTACTTCCACTTGCTCTCCTCTGTTCCACGTAAATACTTTGAGAGAATAGGCATCCCAAAGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| RDG2A | RDG2A [Hordeum vulgare subsp. vulgare]. | MAESLLLPLVRGVAGKAADALVETVTRMCGLDDDRQTLERHLLAVECKLVNAEEMSETNRYVKSWMKELKSVAYLADDVLDDFQYEALRRESKIGKSTTRKALSYITRHSPLLFRFEMSRKLKNVLKKINKLVKEMNTFGLESSVRREERQHPWRQTHSKLDETTQIFGREDDKEVVVKLLLDQQDQRRVQVLPIIGMGGLGKTTLAKMVYNDQGVEQHFELKMWHCVSDNFDAIALLKSIIELATNGSCDLPGSIELLQKKLEQVIGQKRFMLVLDDVWNEDERKWGDVLKPLLCSVGGPGSVILVTCRSKQVASIMCTVTPHELVFLNEEDSWELFSDKAFSNGVEEQAELVSIGRRIVNKCGGLPLALKTMGGLLSSKQKVQEWKAIEESNIGDKDGGKYEVMHILKLSYKHLSPEMKQCFAFCAVFPKDYEMEKDRLIQLWMANGFIQHKGTMDLVQKGELIFDELVWRSFLQDKKVAVRFTSYRGNKIYETIVCKMHDLMHDLAKDVTDECASIEEVTQQKTLLKDVCHMQVSKTELEQISGLCKGRTILRTLLVPSGSHKDFKELLQVSASLRALCWPSYSVVISKAINAKHLRYLDLSGSDIVRLPDSIWVLYNLQTLRLMDCRKLRQLPEDMARLRKLIHLYLSGCESLKSMSPNFGLLNNLHILTTFVVGTGDGLGIEQLKDLQNLSNRLEILNMDKIKSGENAKEANLSQKQNLSELLFSWGQKIDDEPTDVEEVLQGLEPHSNIQKLEIRGYHGLEISQWMRKPQMFDCLRELEMFGCPKCKSIPVIWFSVSLEILVLQSMDNLTTLCSNLGVEAGGSITPLQLFPNLKKLCLIKLPSLEIWAENSVGEPRMFSSLEKLEISDCPRCKSIPAVWFSVSLEFLVLRKMDNLTTLCNNLDVEAGGCITPMQIFPRLKKMRLIELPSLEMWAENSMGEPSCDNLVTFPMLEELEIKNCPKLASIPAIPVVSELRIVGVHSTAVGSVFMSIRLGSWPFLVRLSLGSLEDIPMLPLDAQQNQSERPLEKLESLTLEGPNSLIRSSGLSGSQLMVWKCFRFVRDLMIDGCSNLVRWPTVELWCMDRLCILCITNCDYLKGNISSSEEKTLPLSLEHLTIQNCRSVVALPSNLGKLAKLRSLYVSDCRSLKVLPDGMCGLTSLRELEIWGCPGMEEFPHGLLERLPALEYCSIHLCPELQRRCREGGEYFHLLSSVPRKYFERIGIPK |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 6-1219 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LLPLVRGVAGKAADALVETVTRMCGLDDDRQTLERHLLAVECKLVNAEEMSETNRYVKSWMKELKSVAYLADDVLDDFQYEALRRESKIGKSTTRKALSYITRHSPLLFRFEMSRKLKNVLKKINKLVKEMNTFGLESSVRREERQHPWRQTHSKLDETTQIFGREDDKEVVVKLLLDQQDQRRVQVLPIIGMGGLGKTTLAKMVYNDQGVEQHFELKMWHCVSDNFDAIALLKSIIELATNGSCDLPGSIELLQKKLEQVIGQKRFMLVLDDVWNEDERKWGDVLKPLLCSVGGPGSVILVTCRSKQVASIMCTVTPHELVFLNEEDSWELFSDKAFSNGVEEQAELVSIGRRIVNKCGGLPLALKTMGGLLSSKQKVQEWKAIEESNIGDKDGGKYEVMHILKLSYKHLSPEMKQCFAFCAVFPKDYEMEKDRLIQLWMANGFIQHKGTMDLVQKGELIFDELVWRSFLQDKKVAVRFTSYRGNKIYETIVCKMHDLMHDLAKDVTDECASIEEVTQQKTLLKDVCHMQVSKTELEQISGLCKGRTILRTLLVPSGSHKDFKELLQVSASLRALCWPSYSVVISKAINAKHLRYLDLSGSDIVRLPDSIWVLYNLQTLRLMDCRKLRQLPEDMARLRKLIHLYLSGCESLKSMSPNFGLLNNLHILTTFVVGTGDGLGIEQLKDLQNLSNRLEILNMDKIKSGENAKEANLSQKQNLSELLFSWGQKIDDEPTDVEEVLQGLEPHSNIQKLEIRGYHGLEISQWMRKPQMFDCLRELEMFGCPKCKSIPVIWFSVSLEILVLQSMDNLTTLCSNLGVEAGGSITPLQLFPNLKKLCLIKLPSLEIWAENSVGEPRMFSSLEKLEISDCPRCKSIPAVWFSVSLEFLVLRKMDNLTTLCNNLDVEAGGCITPMQIFPRLKKMRLIELPSLEMWAENSMGEPSCDNLVTFPMLEELEIKNCPKLASIPAIPVVSELRIVGVHSTAVGSVFMSIRLGSWPFLVRLSLGSLEDIPMLPLDAQQNQSERPLEKLESLTLEGPNSLIRSSGLSGSQLMVWKCFRFVRDLMIDGCSNLVRWPTVELWCMDRLCILCITNCDYLKGNISSSEEKTLPLSLEHLTIQNCRSVVALPSNLGKLAKLRSLYVSDCRSLKVLPDGMCGLTSLRELEIWGCPGMEEFPHGLLERLPALEYCSIHLCPELQRRCREGGEYFHLLSS |
| HMMPanther: PTHR23155:SF182 | 6-1219 | PTHR23155:SF182,OS08G0543500 PROTEIN | LLPLVRGVAGKAADALVETVTRMCGLDDDRQTLERHLLAVECKLVNAEEMSETNRYVKSWMKELKSVAYLADDVLDDFQYEALRRESKIGKSTTRKALSYITRHSPLLFRFEMSRKLKNVLKKINKLVKEMNTFGLESSVRREERQHPWRQTHSKLDETTQIFGREDDKEVVVKLLLDQQDQRRVQVLPIIGMGGLGKTTLAKMVYNDQGVEQHFELKMWHCVSDNFDAIALLKSIIELATNGSCDLPGSIELLQKKLEQVIGQKRFMLVLDDVWNEDERKWGDVLKPLLCSVGGPGSVILVTCRSKQVASIMCTVTPHELVFLNEEDSWELFSDKAFSNGVEEQAELVSIGRRIVNKCGGLPLALKTMGGLLSSKQKVQEWKAIEESNIGDKDGGKYEVMHILKLSYKHLSPEMKQCFAFCAVFPKDYEMEKDRLIQLWMANGFIQHKGTMDLVQKGELIFDELVWRSFLQDKKVAVRFTSYRGNKIYETIVCKMHDLMHDLAKDVTDECASIEEVTQQKTLLKDVCHMQVSKTELEQISGLCKGRTILRTLLVPSGSHKDFKELLQVSASLRALCWPSYSVVISKAINAKHLRYLDLSGSDIVRLPDSIWVLYNLQTLRLMDCRKLRQLPEDMARLRKLIHLYLSGCESLKSMSPNFGLLNNLHILTTFVVGTGDGLGIEQLKDLQNLSNRLEILNMDKIKSGENAKEANLSQKQNLSELLFSWGQKIDDEPTDVEEVLQGLEPHSNIQKLEIRGYHGLEISQWMRKPQMFDCLRELEMFGCPKCKSIPVIWFSVSLEILVLQSMDNLTTLCSNLGVEAGGSITPLQLFPNLKKLCLIKLPSLEIWAENSVGEPRMFSSLEKLEISDCPRCKSIPAVWFSVSLEFLVLRKMDNLTTLCNNLDVEAGGCITPMQIFPRLKKMRLIELPSLEMWAENSMGEPSCDNLVTFPMLEELEIKNCPKLASIPAIPVVSELRIVGVHSTAVGSVFMSIRLGSWPFLVRLSLGSLEDIPMLPLDAQQNQSERPLEKLESLTLEGPNSLIRSSGLSGSQLMVWKCFRFVRDLMIDGCSNLVRWPTVELWCMDRLCILCITNCDYLKGNISSSEEKTLPLSLEHLTIQNCRSVVALPSNLGKLAKLRSLYVSDCRSLKVLPDGMCGLTSLRELEIWGCPGMEEFPHGLLERLPALEYCSIHLCPELQRRCREGGEYFHLLSS |
| superfamily: SSF52540 | 149-393 | SSF52540 | ERQHPWRQTHSKLDETTQIFGREDDKEVVVKLLLDQQDQRRVQVLPIIGMGGLGKTTLAKMVYNDQGVEQHFELKMWHCVSDNFDAIALLKSIIELATNGSCDLPGSIELLQKKLEQVIGQKRFMLVLDDVWNEDERKWGDVLKPLLCSVGGPGSVILVTCRSKQVASIMCTVTPHELVFLNEEDSWELFSDKAFSNGVEEQAELVSIGRRIVNKCGGLPLALKTMGGLLSSKQKVQEWKAIEES |
| Gene3D: G3DSA:3.40.50.300 | 168-298 | G3DSA:3.40.50.300 | FGREDDKEVVVKLLLDQQDQRRVQVLPIIGMGGLGKTTLAKMVYNDQGVEQHFELKMWHCVSDNFDAIALLKSIIELATNGSCDLPGSIELLQKKLEQVIGQKRFMLVLDDVWNEDERKWGDVLKPLLCSV |
| HMMPfam: PF00931 IPR002182
|
170-453 | NB-ARC,NBS NB-ARC
|
REDDKEVVVKLLLDQQDQRRVQVLPIIGMGGLGKTTLAKMVYNDQGVEQHFELKMWHCVSDNFDAIALLKSIIELATNGSCDLPGSIELLQKKLEQVIGQKRFMLVLDDVWNEDERKWGDVLKPLLCSVGGPGSVILVTCRSKQVASIMCTVTPHELVFLNEEDSWELFSDKAFSNGVEEQAELVSIGRRIVNKCGGLPLALKTMGGLLSSKQKVQEWKAIEESNIGDKDGGKYEVMHILKLSYKHLSPEMKQCFAFCAVFPKDYEMEKDRLIQLWMANGFIQH |
| FPrintScan: PR00364 IPR000767
|
192-207 | DISEASERSIST Disease resistance protein
|
VLPIIGMGGLGKTTLA |
| FPrintScan: PR00364 IPR000767
|
266-280 | DISEASERSIST Disease resistance protein
|
VIGQKRFMLVLDDVW |
| FPrintScan: PR00364 IPR000767
|
364-378 | DISEASERSIST Disease resistance protein
|
CGGLPLALKTMGGLL |
| superfamily: SSF52058 | 500-990 | SSF52058,LRR | KMHDLMHDLAKDVTDECASIEEVTQQKTLLKDVCHMQVSKTELEQISGLCKGRTILRTLLVPSGSHKDFKELLQVSASLRALCWPSYSVVISKAINAKHLRYLDLSGSDIVRLPDSIWVLYNLQTLRLMDCRKLRQLPEDMARLRKLIHLYLSGCESLKSMSPNFGLLNNLHILTTFVVGTGDGLGIEQLKDLQNLSNRLEILNMDKIKSGENAKEANLSQKQNLSELLFSWGQKIDDEPTDVEEVLQGLEPHSNIQKLEIRGYHGLEISQWMRKPQMFDCLRELEMFGCPKCKSIPVIWFSVSLEILVLQSMDNLTTLCSNLGVEAGGSITPLQLFPNLKKLCLIKLPSLEIWAENSVGEPRMFSSLEKLEISDCPRCKSIPAVWFSVSLEFLVLRKMDNLTTLCNNLDVEAGGCITPMQIFPRLKKMRLIELPSLEMWAENSMGEPSCDNLVTFPMLEELEIKNCPKLASIPAIPVVSELRIVGVHSTA |
| Gene3D: G3DSA:3.80.10.10 | 519-692 | G3DSA:3.80.10.10 | IEEVTQQKTLLKDVCHMQVSKTELEQISGLCKGRTILRTLLVPSGSHKDFKELLQVSASLRALCWPSYSVVISKAINAKHLRYLDLSGSDIVRLPDSIWVLYNLQTLRLMDCRKLRQLPEDMARLRKLIHLYLSGCESLKSMSPNFGLLNNLHILTTFVVGTGDGLGIEQLKDL |
| HMMPfam: PF00560 IPR001611
|
598-617 | LRR_1 Leucine-rich repeat
|
HLRYLDLSGSDIVRLPDSIW |
| HMMPfam: PF13504 | 621-637 | LRR_7,Leucine rich repeat | NLQTLRLMDCRKLRQLP |
| FPrintScan: PR00364 IPR000767
|
641-657 | DISEASERSIST Disease resistance protein
|
ARLRKLIHLYLSGCESL |
| HMMPfam: PF00560 IPR001611
|
645-665 | LRR_1 Leucine-rich repeat
|
KLIHLYLSGCESLKSMSPNFG |
| Gene3D: G3DSA:3.80.10.10 | 693-804 | G3DSA:3.80.10.10 | QNLSNRLEILNMDKIKSGENAKEANLSQKQNLSELLFSWGQKIDDEPTDVEEVLQGLEPHSNIQKLEIRGYHGLEISQWMRKPQMFDCLRELEMFGCPKCKSIPVIWFSVSL |
| Gene3D: G3DSA:3.80.10.10 | 888-903 | G3DSA:3.80.10.10 | VSLEFLVLRKMDNLTT |
| superfamily: SSF52047 | 915-1182 | SSF52047,LRR | CITPMQIFPRLKKMRLIELPSLEMWAENSMGEPSCDNLVTFPMLEELEIKNCPKLASIPAIPVVSELRIVGVHSTAVGSVFMSIRLGSWPFLVRLSLGSLEDIPMLPLDAQQNQSERPLEKLESLTLEGPNSLIRSSGLSGSQLMVWKCFRFVRDLMIDGCSNLVRWPTVELWCMDRLCILCITNCDYLKGNISSSEEKTLPLSLEHLTIQNCRSVVALPSNLGKLAKLRSLYVSDCRSLKVLPDGMCGLTSLRELEIWGCPGMEEFP |
| Gene3D: G3DSA:3.80.10.10 | 947-975 | G3DSA:3.80.10.10 | PSCDNLVTFPMLEELEIKNCPKLASIPAI |
| Gene3D: G3DSA:3.80.10.10 | 1066-1203 | G3DSA:3.80.10.10 | FVRDLMIDGCSNLVRWPTVELWCMDRLCILCITNCDYLKGNISSSEEKTLPLSLEHLTIQNCRSVVALPSNLGKLAKLRSLYVSDCRSLKVLPDGMCGLTSLRELEIWGCPGMEEFPHGLLERLPALEYCSIHLCPEL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Seed borne disease |
List of References
Davide Bulgarelli, Chiara Biselli, Nicholas C Collins, Gabriella Consonni, Antonio M Stanca, Paul Schulze-Lefert, Giampiero Valè
The CC-NB-LRR-type Rdg2a resistance gene confers immunity to the seed-borne barley leaf stripe pathogen in the absence of hypersensitive cell death.
PLoS ONE: 2010, 5(9);
PubMed:20844752
WorldCat.org
DOI
(I e)
List of Contributions
There has not been any contribution yet.
