PRGDB00061457 (Pid3)
| Pid3 | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 225030801 (FJ773286) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Oryza sativa Japonica Group |
DNA Sequence
ATGGCGGAGGGTGTTGTGGGCTCACTAATCGTCAAGCTTGGGGATGCCCTGGCGAGTGAAGCAGTGGAGGTCGCCAAGTCCTTGCTTGGGCTAGAGGGATCTGCTCTGAAGCGCCTCTTTTCTGAGATCCGGGAGGTGAAGGGGGAGCTGGAGAGCATCCATGCCTTCTTGCAGGCAGCCGAGCGGTTCAAGGACGCCGACGAGACAACCTCCGCGTTCGTCAAGCAGGTGAGGAGCCTCGCCCTGAGCATCGAGGACGTAGTCGATGAGTTCACCTACGAGCTGGGGGAAGGAGACGGCCGGATGGGGATGGCAGTGGCACTCAAGAGGATGTGCAAGATGGGCACATGGTCTCGCCTGGCTGGCAATCTGCAGGACATCAAGGTCAACCTGAAAAACGCTGCCGAGAGGAGGATTAGGTATGATCTGAAGGGCGTCGAGAGAGGCGCGAAATCGATGGCGGGAAGGAGGAGCTCAAACTGGAGATCTGACTCTGTACTCTTCAAGAGGGAGGATGAGCTTGTTGGTATCGAGAAGAAGAGGGATTTGCTGATGAAATGGGTGAAAGATGAGGAGCAGCGCCGCATGGTGGTCAGTGTGTGGGGAATGAGTGGAATCGGCAAGACGGCACTGGTTGCTAATGTTTACAATGCTATCAAGGCTGACTTTGACACCTGTGCTTGGATCACTGTGTCTCAGAGCTACGAGGCTGACGATTTGCTTAGGCGAACTGCTCAAGAGTTTCGCAAGAATGATCGGAAGAAAGACTTCCCAATTGACGTTGATATCACAAATTACAGAGGCTTGGTCGAAACCACCCGCTCTTACCTGGAGAACAAAAGGTATGTCCTTGTCCTAGATGATGTATGGAATGCAAATGTTTGGTTCGATAGCAAAGATGCATTTGAAGATGGCAATATTGGCCGAATAATTCTTACATCAAGGAATTATGATGTGGCGTTACTTGCGCATGAAACCCATATAATTAATTTGCAGCCGTTGGAGAAACACCATGCGTGGGATCTGTTCTGTAAAGAGGCATTTTGGAAGAATGAGATAAGGAATTGTCCGCCGGAGTTGCAGCCCTGGGCTAATAATTTTGTTGACAAGTGCAATGGCTTGCCAATCGCAATTGTGTGCATTGGACGCCTTCTGTCATTTCAAGGGTCAACTTATTCAGACTGGGAAAAGGTGTACAAAAATCTTGAGATGCAACTAACAAACAACTCTATCATGGACATGATGAACATTATCTTGAAGATTAGTTTGGAAGATCTACCGCACAACATTAAGAACTGCTTCCTTTATTGCTCCATGTTTCCTGAAAATTATGTGATGAAGAGGAAGTCCCTAGTACGACTCTGGGTTGCTGAAGGATTTATTGAAGAAACTGAGCATAGAACACTTGAGGAAGTGGCAGAGCATTACTTGACTGAACTTGTGAACCGATGTCTTCTGTTGCTGGTGAAGAGAAATGAGGCTGGACATGTTCATGAAGTCCAAATGCACGATATCCTCCGTGTTTTGGCTCTTTCCAAGGCTCATGAACAAAATTTTTGCATTGTCGTTAACCACTCGAGGAGTACACATCTTATTGGAGAAGCACGCCGTTTATCAATTCAGAGAGGGGATTTTGCACAACTTGCAGACCATGCACCACATCTTCGATCCTTGCTGCTTTTCCAAAGTTCACCCAATGTCAGTTCGCTTCAGTCATTACCAAAGTCTATGAAGTTGTTGTCTGTTTTGGATCTAACTGATAGTTCAGTTGATAGGCTGCCAAAGGAAGTGTTTGGCTTGTTCAACTTGCGTTTTCTGGGTCTCAGGCGTACTAAAATCTCCAAGCTTCCAAGCTCCATTGGAAGGCTAAAAATTCTGCTGGTGTTGGACGCTTGGAAGTGTAAAATTGTAAAGCTTCCATTGGCGATTACAAAACTTCAAAAGCTAACACATCTTATTGTAACTTCGAAAGCAGTCGTTGTTTCTAAGCAATTTGTTCCTTCTTTTGATGTGCCAGCACCTTTGCGTATCTGCTCCATGACAACCCTTCAGACATTACTACTCATGGAAGCTAGTTCTCAAATGGTTCATCACCTAGGCTCTCTTGTGGAGTTAAGAACCTTTCGTATCAGCAAGGTGCGAAGTTGCCATTGTGAGCAGTTGTTCATGGCCATCACTAATATGATTCATCTTACCCGTCTTGGGATCTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| resistance protein Pid3 | resistance protein Pid3 [Oryza sativa Japonica Group]. | MAEGVVGSLIVKLGDALASEAVEVAKSLLGLEGSALKRLFSEIREVKGELESIHAFLQAAERFKDADETTSAFVKQVRSLALSIEDVVDEFTYELGEGDGRMGMAVALKRMCKMGTWSRLAGNLQDIKVNLKNAAERRIRYDLKGVERGAKSMAGRRSSNWRSDSVLFKREDELVGIEKKRDLLMKWVKDEEQRRMVVSVWGMSGIGKTALVANVYNAIKADFDTCAWITVSQSYEADDLLRRTAQEFRKNDRKKDFPIDVDITNYRGLVETTRSYLENKRYVLVLDDVWNANVWFDSKDAFEDGNIGRIILTSRNYDVALLAHETHIINLQPLEKHHAWDLFCKEAFWKNEIRNCPPELQPWANNFVDKCNGLPIAIVCIGRLLSFQGSTYSDWEKVYKNLEMQLTNNSIMDMMNIILKISLEDLPHNIKNCFLYCSMFPENYVMKRKSLVRLWVAEGFIEETEHRTLEEVAEHYLTELVNRCLLLLVKRNEAGHVHEVQMHDILRVLALSKAHEQNFCIVVNHSRSTHLIGEARRLSIQRGDFAQLADHAPHLRSLLLFQSSPNVSSLQSLPKSMKLLSVLDLTDSSVDRLPKEVFGLFNLRFLGLRRTKISKLPSSIGRLKILLVLDAWKCKIVKLPLAITKLQKLTHLIVTSKAVVVSKQFVPSFDVPAPLRICSMTTLQTLLLMEASSQMVHHLGSLVELRTFRISKVRSCHCEQLFMAITNMIHLTRLGI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF153 | 10-711 | PTHR23155:SF153,OS06G0330100 PROTEIN | IVKLGDALASEAVEVAKSLLGLEGSALKRLFSEIREVKGELESIHAFLQAAERFKDADETTSAFVKQVRSLALSIEDVVDEFTYELGEGDGRMGMAVALKRMCKMGTWSRLAGNLQDIKVNLKNAAERRIRYDLKGVERGAKSMAGRRSSNWRSDSVLFKREDELVGIEKKRDLLMKWVKDEEQRRMVVSVWGMSGIGKTALVANVYNAIKADFDTCAWITVSQSYEADDLLRRTAQEFRKNDRKKDFPIDVDITNYRGLVETTRSYLENKRYVLVLDDVWNANVWFDSKDAFEDGNIGRIILTSRNYDVALLAHETHIINLQPLEKHHAWDLFCKEAFWKNEIRNCPPELQPWANNFVDKCNGLPIAIVCIGRLLSFQGSTYSDWEKVYKNLEMQLTNNSIMDMMNIILKISLEDLPHNIKNCFLYCSMFPENYVMKRKSLVRLWVAEGFIEETEHRTLEEVAEHYLTELVNRCLLLLVKRNEAGHVHEVQMHDILRVLALSKAHEQNFCIVVNHSRSTHLIGEARRLSIQRGDFAQLADHAPHLRSLLLFQSSPNVSSLQSLPKSMKLLSVLDLTDSSVDRLPKEVFGLFNLRFLGLRRTKISKLPSSIGRLKILLVLDAWKCKIVKLPLAITKLQKLTHLIVTSKAVVVSKQFVPSFDVPAPLRICSMTTLQTLLLMEASSQMVHHLGSLVELRTFRIS |
| HMMPanther: PTHR23155 | 10-711 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | IVKLGDALASEAVEVAKSLLGLEGSALKRLFSEIREVKGELESIHAFLQAAERFKDADETTSAFVKQVRSLALSIEDVVDEFTYELGEGDGRMGMAVALKRMCKMGTWSRLAGNLQDIKVNLKNAAERRIRYDLKGVERGAKSMAGRRSSNWRSDSVLFKREDELVGIEKKRDLLMKWVKDEEQRRMVVSVWGMSGIGKTALVANVYNAIKADFDTCAWITVSQSYEADDLLRRTAQEFRKNDRKKDFPIDVDITNYRGLVETTRSYLENKRYVLVLDDVWNANVWFDSKDAFEDGNIGRIILTSRNYDVALLAHETHIINLQPLEKHHAWDLFCKEAFWKNEIRNCPPELQPWANNFVDKCNGLPIAIVCIGRLLSFQGSTYSDWEKVYKNLEMQLTNNSIMDMMNIILKISLEDLPHNIKNCFLYCSMFPENYVMKRKSLVRLWVAEGFIEETEHRTLEEVAEHYLTELVNRCLLLLVKRNEAGHVHEVQMHDILRVLALSKAHEQNFCIVVNHSRSTHLIGEARRLSIQRGDFAQLADHAPHLRSLLLFQSSPNVSSLQSLPKSMKLLSVLDLTDSSVDRLPKEVFGLFNLRFLGLRRTKISKLPSSIGRLKILLVLDAWKCKIVKLPLAITKLQKLTHLIVTSKAVVVSKQFVPSFDVPAPLRICSMTTLQTLLLMEASSQMVHHLGSLVELRTFRIS |
| superfamily: SSF52540 | 153-409 | SSF52540 | MAGRRSSNWRSDSVLFKREDELVGIEKKRDLLMKWVKDEEQRRMVVSVWGMSGIGKTALVANVYNAIKADFDTCAWITVSQSYEADDLLRRTAQEFRKNDRKKDFPIDVDITNYRGLVETTRSYLENKRYVLVLDDVWNANVWFDSKDAFEDGNIGRIILTSRNYDVALLAHETHIINLQPLEKHHAWDLFCKEAFWKNEIRNCPPELQPWANNFVDKCNGLPIAIVCIGRLLSFQGSTYSDWEKVYKNLEMQLTNN |
| Gene3D: G3DSA:3.40.50.300 | 172-292 | G3DSA:3.40.50.300 | DELVGIEKKRDLLMKWVKDEEQRRMVVSVWGMSGIGKTALVANVYNAIKADFDTCAWITVSQSYEADDLLRRTAQEFRKNDRKKDFPIDVDITNYRGLVETTRSYLENKRYVLVLDDVWNA |
| HMMPfam: PF00931 IPR002182
|
182-464 | NB-ARC,NBS NB-ARC
|
DLLMKWVKDEEQRRMVVSVWGMSGIGKTALVANVYNAIKADFDTCAWITVSQSYEADDLLRRTAQEFRKNDRKKDFPIDVDITNYRGLVETTRSYLENKRYVLVLDDVWNANVWFDSKDAFEDGNIGRIILTSRNYDVALLAHETHIINLQPLEKHHAWDLFCKEAFWKNEIRNCPPELQPWANNFVDKCNGLPIAIVCIGRLLSFQGSTYSDWEKVYKNLEMQLTNNSIMDMMNIILKISLEDLPHNIKNCFLYCSMFPENYVMKRKSLVRLWVAEGFIEET |
| FPrintScan: PR00364 IPR000767
|
197-212 | DISEASERSIST Disease resistance protein
|
VVSVWGMSGIGKTALV |
| FPrintScan: PR00364 IPR000767
|
276-290 | DISEASERSIST Disease resistance protein
|
YLENKRYVLVLDDVW |
| FPrintScan: PR00364 IPR000767
|
371-385 | DISEASERSIST Disease resistance protein
|
CNGLPIAIVCIGRLL |
| Gene3D: G3DSA:3.80.10.10 | 539-734 | G3DSA:3.80.10.10 | SIQRGDFAQLADHAPHLRSLLLFQSSPNVSSLQSLPKSMKLLSVLDLTDSSVDRLPKEVFGLFNLRFLGLRRTKISKLPSSIGRLKILLVLDAWKCKIVKLPLAITKLQKLTHLIVTSKAVVVSKQFVPSFDVPAPLRICSMTTLQTLLLMEASSQMVHHLGSLVELRTFRISKVRSCHCEQLFMAITNMIHLTRL |
| superfamily: SSF52047 | 552-734 | SSF52047,LRR | APHLRSLLLFQSSPNVSSLQSLPKSMKLLSVLDLTDSSVDRLPKEVFGLFNLRFLGLRRTKISKLPSSIGRLKILLVLDAWKCKIVKLPLAITKLQKLTHLIVTSKAVVVSKQFVPSFDVPAPLRICSMTTLQTLLLMEASSQMVHHLGSLVELRTFRISKVRSCHCEQLFMAITNMIHLTRL |
| FPrintScan: PR00364 IPR000767
|
575-591 | DISEASERSIST Disease resistance protein
|
KSMKLLSVLDLTDSSVD |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Rice blast disease | Magnaporthe grisea |
List of References
Junjun Shang, Yong Tao, Xuewei Chen, Yan Zou, Cailin Lei, Jing Wang, Xiaobing Li, Xianfeng Zhao, Meijun Zhang, Zhike Lu, Jichen Xu, Zhukuan Cheng, Jianmin Wan, Lihuang Zhu
Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes.
Genetics: 2009, 182(4);1303-11
PubMed:19506306
WorldCat.org
DOI
(I p)
List of Contributions
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