PRGDB00061460 (Pit)

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Pit
Gene Type Reference_R-Genes,_manually_curated
GenBank 222446463 (AB379816)
Gene Class CNL
Domain Type NBS, LRR, Others
Chromosome 1
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa Japonica Group Pit mRNA for NBS-LRR disease resistance protein, complete cds.

DNA Sequence

ATGGGCACAGTTTTGGATGCTCTCGCTTGGAAATTCTTGGAAAAGCTGGGTCAACTTATTGAGGATGAGGTTATCATGACATTAAGTGTGAAAAGGGGTATTGAGAGCCTGAAGAAAAATCTGGAATTCTTCAACGCTGTTCATGAGGATGCTGAGGCTCTGGCCATGGAGGATCCAGGGATAGATTCATGGTGGAAGAACATGAGAGATGTTATGTTTGATGTCGATGACATCGTAGATCTTTTCATGGTTCATTCACAGAAGCTCTTGCTGCCACCAAGGCCGGTATGTTGCAATCAGCCCTTGTTCTCTAGCTTTGCAAAGTTTTCATTTGATCACATGATTGCCAAAAGAATTGATAATATAAATGAAAAGTTTGAAGAAATTAAAATGAACAAAGAGATGTTTGGCTTGGAGAGAACCAACCGGCAACAAATTCAGATAACAATTGTTGACAGAAGTCAGACATCTCCTGTAGATGAACTTGAGGTGGTTGGAGAAGATATCAGAAGGGCTATTGATGACATGGTCAAAATGATTGTTAGTAGTAACTACAATGAAAGCAGGTCAACTGTTTTTGGGATCCAGGGGATGGGAGGCATCGGTAAGACAACATTAGCTCAAAAGATATACAATGAACAGAGGATAAGGGAGAAATTCCAAGTTCATATATGGTTGTGCATTTCTCAGAATTACACAGAGACCAGTTTGTTAAAACAGGCAATCAGAATGGCTGGAGGAATTTGTGATCAGCTGGAGACTAAGACTGAGCTTCTACCGCTTCTAGTGGACACTATTAGAGGGAAGAGTGTTTTTCTTGTGCTGGATGATGTTTGGAAATCTGATGTATGGATTGATCTTCTTCGTTTGCCTTTCTTGAGAGGTTTGAATTCTCATATCCTTGTGACCTCAAGAAACCTGGATGTTTTGGTTGAAATGCATGCAACTTATACCCACAAGGTAAACAAAATGAATGATTGCGATGGCCTAGAACTGCTGATGAAGATGTCATTAGGGCCATACGAGCAAAGCAGAGAATTCAGTGGTGTTGGATATCAAATTGTCAAAAAGTGTGATGGTCTTCCTCTTGCCATCAAAGTTGTTGCAGGTGTTCTATCTACTAAAAGAACAAGGGCAGAATGGGAGAGTATCCGAGATAGCAAGTGGTCCATTCATGGACTTCCCAGAGAACTAGGAGGCCCTCTGTACTTAAGCTACAGCAACTTACCCCCTGAACTTAAACAATGCTTTCTCTGGTGTGCTTTGTTGCCGTCAAATTTTGTGATACGTCGTGATGCTGTCGCTTACTGGTGGGTTGCTGAAGGTTTCGTGACGGAAGTGCATGGGTACTCAATACATGAGGTTGCTGAAGAGTACTACCATGAGCTAATCAGAAGGAATCTTCTGCAGCCACGACCAGAGTTTGTAGACAAAGGCGAGTCAACAATGCATGATCTATTGAGGTCACTTGGTCAATTTTTGACAAAGGATCACTCCATATTCATGAACATGGAATATAGCAAAGCCTTACCAAATCTACGCCACTTATGTATCAGCAATGATGTAGAAGAAATACCTGCTATAGAAAAGCAAAAGTGCTTGAGGAGCCTCCTAGTTTTTGATAACAAAAACTTCATGAAAATTAATAAGGACATTTTCAGAGAACTCAAGCATATCCGTGTCTTAGTTCTCAGTGGAACAAGCATCCAAATCATACCAGAGTCAGTGGGAAACTTCTTGTTACTGAGGCTTCTAGATCTAAGCTATACAAAAATTCAGAAACTCCCAGAATCCATAGGAAAACTTACCAGCCTTGAATACCTTTCTTTGCATGGTTGCATACATTTGGATAGCCTGCCAGATAGTTTAATGAGACTGTCGAACATAAGTTTCCTAGAGCTAGAACAGACTGCAATCGACCATGTTCCAAAAGGAGTTGCAAAGTTGCAGCAACTCTACAACCTTAGAGGAGTTTTTGACAGTGGAACTGGATTCAGACTAGATGAACTCCAATGTCTCTCCAATATCCAACGTCTCCGGATTGTGAAGCTAGAAAAAGCAGCACCAGGGGGTTCATTTGTACTCAAGAACTGTCTTCATCTTCGAGAATTGTGGCTCGGTTGCACAATCGGAGGTCATGATAAAACTTATTATCAGGCCAACGAGATTGAGAGAATTCAGCAAGTCTACGAACTGCTAATTCCATCGCCAAGCTTACTGTATATATTTCTTGTCGGGTTCCCTGGTGTAAGGTTCCCAGATTGGTTGTGCTCAGAACCAGAGCGTAAGATGCCAAATTTGGGTCATATGCACCTCAACGACTGCACTTCATGTTCAATGCTTCCACCAGCAGGCCAGATGCCAGAACTGCTAGTTTTTAAGATTAAAGGCGCAGATGCAATAGTGAATATGGGTGCAGAGCTGCTAGGGAAAGGCGTCAATAGCGCAAAGCATATAACTATTTTTCCAAAACTCGAATTGCTTCTCATCACTAACATGAGCAATTTGGAAAGTTGGTCTCTCAACACATGGAATTTGTGTGGCAAATCTGAACAGCTTGTTCTGATGCCTTGCCTTAAGCGTTTGTTTCTTAACGACTGCCCAAAACTAAGGGCTCTCCCTGAAGACTTGCATAGGATTGCTAACTTAAGAAGAATCCATATCGAAGGTGCTCACACGCTGCAAGAAGTTGACAACCTTCCTTCAGTGTTATGGCTCAAGGTCAAGAACAACAGGTGTTTGAGGAGAATTTCCAATCTCTGTAATCTAAAGGACTTGCTTGCGCAGGACTGTCCAGCGCTGTATCAGGCAGAGAATCTAATCTCACTAAAGAGACTCTACATGGTCGATTGCCACAACGCGAAGCAATTCAGGATGAGCCTCCTGGAAGACCAACAACTTGCCGTCCATGTTGTTACAGTTGGTGCAGATGGCAGGGATATCTTTCCAGATGAATCTCTCTATAATTAG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Oryza sativa Japonica Group].

MGTVLDALAWKFLEKLGQLIEDEVIMTLSVKRGIESLKKNLEFFNAVHEDAEALAMEDPGIDSWWKNMRDVMFDVDDIVDLFMVHSQKLLLPPRPVCCNQPLFSSFAKFSFDHMIAKRIDNINEKFEEIKMNKEMFGLERTNRQQIQITIVDRSQTSPVDELEVVGEDIRRAIDDMVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIWLCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRLPFLRGLNSHILVTSRNLDVLVEMHATYTHKVNKMNDCDGLELLMKMSLGPYEQSREFSGVGYQIVKKCDGLPLAIKVVAGVLSTKRTRAEWESIRDSKWSIHGLPRELGGPLYLSYSNLPPELKQCFLWCALLPSNFVIRRDAVAYWWVAEGFVTEVHGYSIHEVAEEYYHELIRRNLLQPRPEFVDKGESTMHDLLRSLGQFLTKDHSIFMNMEYSKALPNLRHLCISNDVEEIPAIEKQKCLRSLLVFDNKNFMKINKDIFRELKHIRVLVLSGTSIQIIPESVGNFLLLRLLDLSYTKIQKLPESIGKLTSLEYLSLHGCIHLDSLPDSLMRLSNISFLELEQTAIDHVPKGVAKLQQLYNLRGVFDSGTGFRLDELQCLSNIQRLRIVKLEKAAPGGSFVLKNCLHLRELWLGCTIGGHDKTYYQANEIERIQQVYELLIPSPSLLYIFLVGFPGVRFPDWLCSEPERKMPNLGHMHLNDCTSCSMLPPAGQMPELLVFKIKGADAIVNMGAELLGKGVNSAKHITIFPKLELLLITNMSNLESWSLNTWNLCGKSEQLVLMPCLKRLFLNDCPKLRALPEDLHRIANLRRIHIEGAHTLQEVDNLPSVLWLKVKNNRCLRRISNLCNLKDLLAQDCPALYQAENLISLKRLYMVDCHNAKQFRMSLLEDQQLAVHVVTVGADGRDIFPDESLYN

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF173
5-946 PTHR23155:SF173,OS08G0332600 PROTEIN

LDALAWKFLEKLGQLIEDEVIMTLSVKRGIESLKKNLEFFNAVHEDAEALAMEDPGIDSWWKNMRDVMFDVDDIVDLFMVHSQKLLLPPRPVCCNQPLFSSFAKFSFDHMIAKRIDNINEKFEEIKMNKEMFGLERTNRQQIQITIVDRSQTSPVDELEVVGEDIRRAIDDMVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIWLCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRLPFLRGLNSHILVTSRNLDVLVEMHATYTHKVNKMNDCDGLELLMKMSLGPYEQSREFSGVGYQIVKKCDGLPLAIKVVAGVLSTKRTRAEWESIRDSKWSIHGLPRELGGPLYLSYSNLPPELKQCFLWCALLPSNFVIRRDAVAYWWVAEGFVTEVHGYSIHEVAEEYYHELIRRNLLQPRPEFVDKGESTMHDLLRSLGQFLTKDHSIFMNMEYSKALPNLRHLCISNDVEEIPAIEKQKCLRSLLVFDNKNFMKINKDIFRELKHIRVLVLSGTSIQIIPESVGNFLLLRLLDLSYTKIQKLPESIGKLTSLEYLSLHGCIHLDSLPDSLMRLSNISFLELEQTAIDHVPKGVAKLQQLYNLRGVFDSGTGFRLDELQCLSNIQRLRIVKLEKAAPGGSFVLKNCLHLRELWLGCTIGGHDKTYYQANEIERIQQVYELLIPSPSLLYIFLVGFPGVRFPDWLCSEPERKMPNLGHMHLNDCTSCSMLPPAGQMPELLVFKIKGADAIVNMGAELLGKGVNSAKHITIFPKLELLLITNMSNLESWSLNTWNLCGKSEQLVLMPCLKRLFLNDCPKLRALPEDLHRIANLRRIHIEGAHTLQEVDNLPSVLWLKVKNNRCLRRISNLCNLKDLLAQDCPALYQAENLISLKRL

HMMPanther: PTHR23155
5-946 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LDALAWKFLEKLGQLIEDEVIMTLSVKRGIESLKKNLEFFNAVHEDAEALAMEDPGIDSWWKNMRDVMFDVDDIVDLFMVHSQKLLLPPRPVCCNQPLFSSFAKFSFDHMIAKRIDNINEKFEEIKMNKEMFGLERTNRQQIQITIVDRSQTSPVDELEVVGEDIRRAIDDMVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIWLCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRLPFLRGLNSHILVTSRNLDVLVEMHATYTHKVNKMNDCDGLELLMKMSLGPYEQSREFSGVGYQIVKKCDGLPLAIKVVAGVLSTKRTRAEWESIRDSKWSIHGLPRELGGPLYLSYSNLPPELKQCFLWCALLPSNFVIRRDAVAYWWVAEGFVTEVHGYSIHEVAEEYYHELIRRNLLQPRPEFVDKGESTMHDLLRSLGQFLTKDHSIFMNMEYSKALPNLRHLCISNDVEEIPAIEKQKCLRSLLVFDNKNFMKINKDIFRELKHIRVLVLSGTSIQIIPESVGNFLLLRLLDLSYTKIQKLPESIGKLTSLEYLSLHGCIHLDSLPDSLMRLSNISFLELEQTAIDHVPKGVAKLQQLYNLRGVFDSGTGFRLDELQCLSNIQRLRIVKLEKAAPGGSFVLKNCLHLRELWLGCTIGGHDKTYYQANEIERIQQVYELLIPSPSLLYIFLVGFPGVRFPDWLCSEPERKMPNLGHMHLNDCTSCSMLPPAGQMPELLVFKIKGADAIVNMGAELLGKGVNSAKHITIFPKLELLLITNMSNLESWSLNTWNLCGKSEQLVLMPCLKRLFLNDCPKLRALPEDLHRIANLRRIHIEGAHTLQEVDNLPSVLWLKVKNNRCLRRISNLCNLKDLLAQDCPALYQAENLISLKRL

superfamily: SSF52540
172-387 SSF52540

AIDDMVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIWLCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRLPFLRGLNSHILVTSRNLDVLVEMHATYTHKVNKMNDCDGLELLMKMSLGPYEQSREFSGVGYQIVKKCDGLPLAIKVVAGVLSTKRTRAEWESIRDS

HMMPfam: PF00931
IPR002182
174-448 NB-ARC,NBS
NB-ARC

DDMVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIWLCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRLPFLRGLNSHILVTSRNLDVLVEMHATYTHKVNKMNDCDGLELLMKMSLGPYEQSREFSGVGYQIVKKCDGLPLAIKVVAGVLSTKRTRAEWESIRDSKWSIHGLPRELGGPLYLSYSNLPPELKQCFLWCALLPSNFVIRRDAVAYWWVAEGFVTEVH

Gene3D: G3DSA:3.40.50.300
175-309 G3DSA:3.40.50.300

DMVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIREKFQVHIWLCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLDDVWKSDVWIDLLRLPFLRGLNSHILVTSRNLDV

FPrintScan: PR00364
IPR000767
192-207 DISEASERSIST
Disease resistance protein

VFGIQGMGGIGKTTLA

FPrintScan: PR00364
IPR000767
265-279 DISEASERSIST
Disease resistance protein

TIRGKSVFLVLDDVW

FPrintScan: PR00364
IPR000767
358-372 DISEASERSIST
Disease resistance protein

CDGLPLAIKVVAGVL

superfamily: SSF52058
506-870 SSF52058,LRR

YSKALPNLRHLCISNDVEEIPAIEKQKCLRSLLVFDNKNFMKINKDIFRELKHIRVLVLSGTSIQIIPESVGNFLLLRLLDLSYTKIQKLPESIGKLTSLEYLSLHGCIHLDSLPDSLMRLSNISFLELEQTAIDHVPKGVAKLQQLYNLRGVFDSGTGFRLDELQCLSNIQRLRIVKLEKAAPGGSFVLKNCLHLRELWLGCTIGGHDKTYYQANEIERIQQVYELLIPSPSLLYIFLVGFPGVRFPDWLCSEPERKMPNLGHMHLNDCTSCSMLPPAGQMPELLVFKIKGADAIVNMGAELLGKGVNSAKHITIFPKLELLLITNMSNLESWSLNTWNLCGKSEQLVLMPCLKRLFLNDCPKL

Gene3D: G3DSA:3.80.10.10
512-711 G3DSA:3.80.10.10

NLRHLCISNDVEEIPAIEKQKCLRSLLVFDNKNFMKINKDIFRELKHIRVLVLSGTSIQIIPESVGNFLLLRLLDLSYTKIQKLPESIGKLTSLEYLSLHGCIHLDSLPDSLMRLSNISFLELEQTAIDHVPKGVAKLQQLYNLRGVFDSGTGFRLDELQCLSNIQRLRIVKLEKAAPGGSFVLKNCLHLRELWLGCTIG

HMMPfam: PF12799
582-620 LRR_4,Leucine Rich repeats (2 copies)

LRLLDLSYTKIQKLPESIGKLTSLEYLSLHGCIHLDSLP

FPrintScan: PR00364
IPR000767
600-616 DISEASERSIST
Disease resistance protein

GKLTSLEYLSLHGCIHL

Gene3D: G3DSA:3.80.10.10
750-776 G3DSA:3.80.10.10

VRFPDWLCSEPERKMPNLGHMHLNDCT

Gene3D: G3DSA:3.80.10.10
777-954 G3DSA:3.80.10.10

SCSMLPPAGQMPELLVFKIKGADAIVNMGAELLGKGVNSAKHITIFPKLELLLITNMSNLESWSLNTWNLCGKSEQLVLMPCLKRLFLNDCPKLRALPEDLHRIANLRRIHIEGAHTLQEVDNLPSVLWLKVKNNRCLRRISNLCNLKDLLAQDCPALYQAENLISLKRLYMVDCHNA

superfamily: SSF52047
823-952 SSF52047,LRR

PKLELLLITNMSNLESWSLNTWNLCGKSEQLVLMPCLKRLFLNDCPKLRALPEDLHRIANLRRIHIEGAHTLQEVDNLPSVLWLKVKNNRCLRRISNLCNLKDLLAQDCPALYQAENLISLKRLYMVDCH


Diseases

Disease Pathogen Avirulence gene
Rice blast disease Magnaporthe grisea

List of References



List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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