PRGDB00061462 (Serk3B)
| Serk3B | |
|---|---|
| Gene Type | Reference_R-Genes,_manually_curated |
| GenBank | 309754760 (HQ332145) |
| Gene Class | RLK |
| Domain Type | LRR, Ser-Thr Kinase |
| Gene Species | Nicotiana benthamiana |
DNA Sequence
ATGGATCAGTCGGTCTTGTTGATCTGTGTTTTTCTATGCTTAACTGGGCTGCTTTTGAGCTCGTCACCGGTTGCCGGTAACGCTGAAGGTGATGCTTTGTATGCTCAGAAGACCAATTTGGGTGATCCTAATACTGTTCTACAGAGTTGGGATCAAACACTTGTTAATCCTTGTACTTGGTTCCATGTGACATGCAACAATGAAAATAGTGTTACTAGAGTTGATCTTGGAAATGCAAATCTAACAGGTCAACTGGTACCACAGCTTGGCCAACTCCAGAAATTGCAGTACTTGGAGCTTTATAGTAATAACATAAGCGGAAGAATTCCAAATGAACTGGGAAACTTGACAGAGTTGGTCAGCTTGGATCTTTACCTGAACAACTTAAATGGTCCAATCCCTGACACACTGGGCAAGCTTCAGAAACTACGCTTCCTGAGGCTGAATAATAACAGTTTGATTGGACTTATTCCCATGTCTCTAACCACCATTCTTGCACTTCAAGTACTTGATCTCTCAAGCAATCATTTAACAGGACCAGTTCCAGTCAATGGTTCCTTTTCGCTTTTTACTCCTATAAGTTTTGCTAATAATCAATTGGAAGTTCCTCCAGCTTCTCCGCCTCCTCCTCTTCCTCCTACACCCTCATCTTCTTCTTCAGTGGGCAACAGTGCAACTGGAGCCATCGCTGGAGGAGTTGCTGCAGGGGCTGCTCTTCTATTTGCAGCTCCTGCAATTTTTCTTGTTTGGTGGCGTCGGAGGAAACCACAAGATCACTTCTTTGATGTTCCTGCTGAGGAAGATCCAGAAGTTCATCTAGGACAACTCAAGAGGTTTTCCTTGCGTGAACTACAAGTTGCATCAGATAATTTTAGCAATAGAAATATACTTGGTAGAGGTGGATTTGGTAAGGTTTATAAGGGCCGGTTAGCTGATGGCTCTTTAGTTGCAGTGAAAAGACTGAAAGAGGAACGTACTCAAGGTGGGGAGTTACAGTTTCAGACAGAAGTAGAAATGATCAGCATGGCTGTACACCGAAATCTACTTCGTTTAAGGGGCTTTTGCATGACTCTCACTGAGCGCGTGCTTGTTTATCCATACATGGAGAACGGAAGTGTTGCATCACGTTTAAGAGAGCGGCCAGAATCGGAGCCCCCACTTGACTGGCCAAAAAGGAAGCATATTGCACTTGGGTCGGCAAGAGGCCTTGCTTACTTGCATGATCATTGTGATCCTAAGATTATTCATCGTGATGTCAAAGCCGCAAATATCTTATTGGATGAGGAGTTTGAAGCAGTTGTTGGGGATTTTGGGTTAGCTAAACTCATGGACTACAAGGATACTCACGTTACCACTGCTGTACGTGGTACAATTGGGCATATTGCCCCTGAATATTTATCCACTGGTAAATCTTCTGAGAAGACGGATGTGTTTGGCTATGGGGTTATGCTGCTAGAGCTCATAACTGGCCAAAGGGCTTTTGATCTTGCTCGACTTGCAAATGATGATGATGTCATGTTACTTGATTGGGTGAAGGGACTCCTGAACGACAAGAAATATGAAACATTAGTTGATGCCGATCTCCAAGGTAATTACAATGAAGAAGAGGTGGAGCAGCTTATTCAGGTAGCTCTACTCTGCACGCAGAGTACGCCTACAGAACGTCCGAAGATGTCAGAAGTTGTTAGAATGCTTGAAGGCGACGGCCTTGCTGAGAGGTGGGAGGAATGGCAAAAGGAGGAGATGTTCAGGCAAGATTACAACCATGTCCACCAGCCCCATACTGATTGGATAATAGCCGACTCCACTTCAAATATCCGACCAGATGAATTGTCGGGGCCAAGATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| SERK3B | SERK3B [Nicotiana benthamiana]. | MDQSVLLICVFLCLTGLLLSSSPVAGNAEGDALYAQKTNLGDPNTVLQSWDQTLVNPCTWFHVTCNNENSVTRVDLGNANLTGQLVPQLGQLQKLQYLELYSNNISGRIPNELGNLTELVSLDLYLNNLNGPIPDTLGKLQKLRFLRLNNNSLIGLIPMSLTTILALQVLDLSSNHLTGPVPVNGSFSLFTPISFANNQLEVPPASPPPPLPPTPSSSSSVGNSATGAIAGGVAAGAALLFAAPAIFLVWWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTLTERVLVYPYMENGSVASRLRERPESEPPLDWPKRKHIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLNDKKYETLVDADLQGNYNEEEVEQLIQVALLCTQSTPTERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDYNHVHQPHTDWIIADSTSNIRPDELSGPR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 3-607 | PTHR24420,FAMILY NOT NAMED | QSVLLICVFLCLTGLLLSSSPVAGNAEGDALYAQKTNLGDPNTVLQSWDQTLVNPCTWFHVTCNNENSVTRVDLGNANLTGQLVPQLGQLQKLQYLELYSNNISGRIPNELGNLTELVSLDLYLNNLNGPIPDTLGKLQKLRFLRLNNNSLIGLIPMSLTTILALQVLDLSSNHLTGPVPVNGSFSLFTPISFANNQLEVPPASPPPPLPPTPSSSSSVGNSATGAIAGGVAAGAALLFAAPAIFLVWWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTLTERVLVYPYMENGSVASRLRERPESEPPLDWPKRKHIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLNDKKYETLVDADLQGNYNEEEVEQLIQVALLCTQSTPTERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDYNHVHQPHTDWIIADSTSNIR |
| HMMPanther: PTHR24420:SF351 | 3-607 | PTHR24420:SF351,SUBFAMILY NOT NAMED | QSVLLICVFLCLTGLLLSSSPVAGNAEGDALYAQKTNLGDPNTVLQSWDQTLVNPCTWFHVTCNNENSVTRVDLGNANLTGQLVPQLGQLQKLQYLELYSNNISGRIPNELGNLTELVSLDLYLNNLNGPIPDTLGKLQKLRFLRLNNNSLIGLIPMSLTTILALQVLDLSSNHLTGPVPVNGSFSLFTPISFANNQLEVPPASPPPPLPPTPSSSSSVGNSATGAIAGGVAAGAALLFAAPAIFLVWWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTLTERVLVYPYMENGSVASRLRERPESEPPLDWPKRKHIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLNDKKYETLVDADLQGNYNEEEVEQLIQVALLCTQSTPTERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDYNHVHQPHTDWIIADSTSNIR |
| superfamily: SSF52058 | 23-203 | SSF52058,LRR | PVAGNAEGDALYAQKTNLGDPNTVLQSWDQTLVNPCTWFHVTCNNENSVTRVDLGNANLTGQLVPQLGQLQKLQYLELYSNNISGRIPNELGNLTELVSLDLYLNNLNGPIPDTLGKLQKLRFLRLNNNSLIGLIPMSLTTILALQVLDLSSNHLTGPVPVNGSFSLFTPISFANNQLEVP |
| HMMPfam: PF08263 IPR013210
|
27-66 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
NAEGDALYAQKTNLGDPNTVLQSWDQTLVNPCTWFHVTCN |
| Gene3D: G3DSA:3.80.10.10 | 28-199 | G3DSA:3.80.10.10 | AEGDALYAQKTNLGDPNTVLQSWDQTLVNPCTWFHVTCNNENSVTRVDLGNANLTGQLVPQLGQLQKLQYLELYSNNISGRIPNELGNLTELVSLDLYLNNLNGPIPDTLGKLQKLRFLRLNNNSLIGLIPMSLTTILALQVLDLSSNHLTGPVPVNGSFSLFTPISFANNQ |
| HMMPfam: PF00560 IPR001611
|
94-116 | LRR_1 Leucine-rich repeat
|
KLQYLELYSNNISGRIPNELGNL |
| HMMPfam: PF00560 IPR001611
|
167-184 | LRR_1 Leucine-rich repeat
|
LQVLDLSSNHLTGPVPVN |
| Gene3D: G3DSA:2.60.120.200 IPR013320
|
200-314 | ConA_like_subgrp Concanavalin A-like lectin/glucanase, subgroup
|
LEVPPASPPPPLPPTPSSSSSVGNSATGAIAGGVAAGAALLFAAPAIFLVWWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNRNILGRGGFGKVYKGRLADGS |
| superfamily: SSF56112 IPR011009
|
261-573 | Kinase_like Protein kinase-like domain
|
FDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTLTERVLVYPYMENGSVASRLRERPESEPPLDWPKRKHIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLNDKKYETLVDADLQGNYNEEEVEQLIQVALLCTQSTPTERPKMSEVVRMLEGDGLAER |
| ProfileScan: PS50011 IPR000719
|
291-578 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTLTERVLVYPYMENGSVASRLRERPESEPPLDWPKRKHIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLNDKKYETLVDADLQGNYNEEEVEQLIQVALLCTQSTPTERPKMSEVVRMLEGDGLAERWEEWQ |
| HMMPfam: PF00069 IPR000719
|
294-563 | Pkinase,Ser-thr Protein kinase, catalytic domain
|
RNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTLTERVLVYPYMENGSVASRLRERPESEPPLDWPKRKHIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLNDKKYETLVDADLQGNYNEEEVEQLIQVALLCTQSTPTERPKMSEVVR |
| PatternScan: PS00107 IPR017441
|
297-319 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGRGGFGKVYKGRLADGSLVAVK |
| Gene3D: G3DSA:3.30.200.20 | 315-369 | G3DSA:3.30.200.20 | LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTLTERVLVYPYME |
| Gene3D: G3DSA:1.10.510.10 | 370-565 | G3DSA:1.10.510.10 | NGSVASRLRERPESEPPLDWPKRKHIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLNDKKYETLVDADLQGNYNEEEVEQLIQVALLCTQSTPTERPKMSEVVRML |
| PatternScan: PS00108 IPR008271
|
414-426 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDVKAANILL |
Diseases
| Disease | Pathogen | Avirulence gene |
|---|---|---|
| Late blight Tobacco | Phytophthora infestans |
List of References
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