PRGDB00061468 (Lr21)

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Lr21
Gene Type Reference_R-Genes,_manually_curated
GenBank 226424825 (FJ876280)
Gene Class CNL
Domain Type NBS, LRR, Others
Gene Species Triticum aestivum

Comment?

Triticum aestivum Lr21 gene, complete cds.

DNA Sequence

ATGGCTACTGCTTGGGACGTTGCCTCTGTTGGTTGGTCCATGGTCGTGTTGGGCTGGTTGGTGTCGCCTGTCATCACCTTGATCCTGCCCAAGATCCTTTCCCGCCTGGGTTTCGATGCGGCACAGAAGCTCCAGGGGCTAGTGATCAGCATCATGCCCGAGATGGAGAACACGCTGCGGGCCGTAGATCAGGAGAGGATGATGCTGAGAGGAAAGAAATCAAACTCCGATGTGGCCGCACTGGACAAGATGGCCGCCATGCTGAGGCACGCTCGGGAGGATGCAGAGGACATCTTCGATGATGCTCATGAGAAGATCTGCGTCGGAGACTTCCTCTACGGCGTCGTGCAATCCTTCCTCGACGGGATTGCACGCATCATTCGGAGCAGATGGGCTTGGCTAATGCAGTGGGCACGGAGGAGCTCTTTGTGTCGTTTCCTTGAGCACGCTTCCGGTGAGGCCGTCACTATCGGTGTTGCCGCCTCAAATGAGCCCGGTCATGTGACTATAAATGTTGCGGCGCCCTCTGGCGGCGAGTCTATTCCGGTAACTACCAGTGCTGCAGCCTCACACGAACCAACAGCTCCATCCTCCGATTCCTTGGGGCGGTGTCTCTCTTGCTTTTCCAGCTCCTTCAACTTCGTCAAGTACTATTGTACATCCAGCTTCAACTGGTTACGCTTTTACCGAGATTGGTCCTATGAGGTGGTTGGTGTCACAACTTATCAGGAGAATGCCACTGCATTGGATGTTGTCCTTACTGCTATCTCAAGATGGAACTTGAATAAAAGAATAGAGAAGGTACAAAGTACCATCAGCGAAGTGACGAAGTCACCGCTCTTGGGCACGGCAAGCAAGAGTGCACCAGACGATATTGCTAACAAGAATAGGAGTAGAATTAGAACTGCTAGCAAGCGGAAGGTATTTGGTCGAGAGGGGCTGCGTGATCATATCATGGTAAGGCTTCGTGAGATACCAGAGCATGATGCAGCAAGCTCAAGTGCTGATCCATGTTACTCAGTGATTGGTATATATGGTGTTGCTGGGTCTGGGAAGACCACGTTTGCAGGATATATTCAAGATTACATAAAGGAGGAATGCAAGGATGAGAAACTTTTCGACACCATCATGTGCATTCATGTGACTGAAACTTTCAGTGTGGATGATATATTTCATGAAATGCTGAAGTATATTACCGGAGATAGTCACTCCAATATTTCAGATCGTGGGGCTCTAGATAAGAAGTTGAAGGAAGCATTGTGTGGCAAACGTTTCTTCTTGATATTGGATGATCTCTGGGTGAAAAACAAGAATGACCAACACCTAGAGGAGCTAATCTCTCCACTCAATGTTGGGCTGAAAGGAAGCAAAATCCTGGTGACGGCTCGAACAAAAGAAGCAGCTGGAGCTCTGGGTGCCGATAAATTTATTGAAATGCCTGATTTGGATGAGGATCAGTACTTGGCGATGTTTATGCATTATGCGCTAAGTGATACAAGAGTTGCCCTTCAAGAATTTGAACAAGTTGGGAGAGAGATTGCCAAAAAACTACACCGATCACCTATTGCAGCAGTAACAGTTGCAGGACGGCTTGGGGCAAACCCAAATATCAGTTTTTGGAAAAATGTTGCAAAGCTTGACATGTTGAATTACACCATGGATGCTCTTTGGTGGAGCTATCAGCAGCTTGATCCGGACATTAGGCGATGCTTTGAATTCTGCAGTATTTTCCCCAGAAAATTCAAACTGGAAAAAGACCAATTAGTCCGCCTGTGGACAGCACAAGGATTTGTAAAGACCAGTTGTGCAACGGAGGAGATGGAAGATGTTGCCGAGGGCTACATTCAAGAGTTAGTGTCATGCTCATTTCTGCAAGAAAAAGGAACTGGTTCTGGCGTTGATCATTTTACAATTCATGATCTGTTGCATGATTTATTAGTCAAGGTTGCTGGAAATGATTGCTTCAGAATCGAGAATAGATGGAGTAAACAAGGAGAATGCCAAGAAGATGTCCCTCGAGATGTCCGTCATCTTTTTGTTCAGAAGTATGATGGGGAATTGATTACCAGGAAGATCCTTGGATTGGAAAATTTACGCACTCTCATTATTTGTGTTGTCGAAGAGAATAGACCAGTTGAGGAAAAGGTCATTGAGAGTATGTGCGTGAGGCTGCTGAAGTTGCGGGTACTGGCCATTGCTTTCAACAAAAAATGCCGTTCAACCAGCAATCCCAGTGATAAGTTCTTGGTCCCAGAATCCATTACTCAGTTAAAGCACCTCCGCTATCTAGCTTTCCGGAAAAGTGACAACTGCAAGGTTATTTTGCCAAGTGCACTAGCTAAACTTCTCCATATCCAGCTGCTAGATTTTGGTCTTGGCAAAATTTCGGATTTTACCTGTGCTGCTGACCTTATCAACTTGCGGCACATATTCTGCTGGGATGTGAGCTTTCCTAACATAGGCACGCTGAGCTCACTTCAAAGAATACCCTTCTTCAGGCTAAGGAATGAACAGGGTTATGAGATAAAACAACTTAGGGACCTGAACAAGATTCGTGGCATGCTGGTGGTCAATGGCTTTGAAAATGTTAAAAGCAAGGAGGAAGCTCTTGAAGCCAATCTAGCTGCCAAGGAAAGGCTCACGGAACTGATACTATGTTTTTTGACTTCCCATACACGGGGCAATGGCAATGCGGAAGTTGCAGCAGAGGTGCTTGAGGGCCTGTGCCCTCCCGTGGGGCTAGAAGCACTGCTCATCTATGACTACAACGGCTCAAGGTACCCAGATTGGATGGTGGGTAAGCTGACCGGTGGCCCAAAGAACCTGAAACTACTTGAAATCTATGGCTGCAGCCGACTGGGACCTGGCCCTCAACTTGAGGCTTTCCCTCATCTTCGTATGCTCAACCTTGAGGACTGCAGCTGGGACGCCTTACCAGGCAACTTGGAGCACCTCACTTCGCTCAAGGCACTGAAGATCGAGCATTGCATGAATATCCGGTCGCTTCCAACACTGCCCCAGTCTCTGAAGCTGTTCATACTTCGGTGCTGCGATGTTGAGCTCATGAAGAGTTGTGAAACAGAAGGAGATCCAAACTGGCATAAGATAAAGCACATCCCCGATAAAATGGTTTCAGGCCAACCTCACAGCATCTACCACATCAGGAGAATGTTCCGAGTGTCGGCCCCAGTCCCGACGCTGAGTACTTCCGGTGACGGCGACACGACCGACGAACGAAGATGA


Protein sequences

Name Description Sequence
Lr21 Lr21 [Triticum aestivum].

MATAWDVASVGWSMVVLGWLVSPVITLILPKILSRLGFDAAQKLQGLVISIMPEMENTLRAVDQERMMLRGKKSNSDVAALDKMAAMLRHAREDAEDIFDDAHEKICVGDFLYGVVQSFLDGIARIIRSRWAWLMQWARRSSLCRFLEHASGEAVTIGVAASNEPGHVTINVAAPSGGESIPVTTSAAASHEPTAPSSDSLGRCLSCFSSSFNFVKYYCTSSFNWLRFYRDWSYEVVGVTTYQENATALDVVLTAISRWNLNKRIEKVQSTISEVTKSPLLGTASKSAPDDIANKNRSRIRTASKRKVFGREGLRDHIMVRLREIPEHDAASSSADPCYSVIGIYGVAGSGKTTFAGYIQDYIKEECKDEKLFDTIMCIHVTETFSVDDIFHEMLKYITGDSHSNISDRGALDKKLKEALCGKRFFLILDDLWVKNKNDQHLEELISPLNVGLKGSKILVTARTKEAAGALGADKFIEMPDLDEDQYLAMFMHYALSDTRVALQEFEQVGREIAKKLHRSPIAAVTVAGRLGANPNISFWKNVAKLDMLNYTMDALWWSYQQLDPDIRRCFEFCSIFPRKFKLEKDQLVRLWTAQGFVKTSCATEEMEDVAEGYIQELVSCSFLQEKGTGSGVDHFTIHDLLHDLLVKVAGNDCFRIENRWSKQGECQEDVPRDVRHLFVQKYDGELITRKILGLENLRTLIICVVEENRPVEEKVIESMCVRLLKLRVLAIAFNKKCRSTSNPSDKFLVPESITQLKHLRYLAFRKSDNCKVILPSALAKLLHIQLLDFGLGKISDFTCAADLINLRHIFCWDVSFPNIGTLSSLQRIPFFRLRNEQGYEIKQLRDLNKIRGMLVVNGFENVKSKEEALEANLAAKERLTELILCFLTSHTRGNGNAEVAAEVLEGLCPPVGLEALLIYDYNGSRYPDWMVGKLTGGPKNLKLLEIYGCSRLGPGPQLEAFPHLRMLNLEDCSWDALPGNLEHLTSLKALKIEHCMNIRSLPTLPQSLKLFILRCCDVELMKSCETEGDPNWHKIKHIPDKMVSGQPHSIYHIRRMFRVSAPVPTLSTSGDGDTTDERR

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
306-528 SSF52540

RKVFGREGLRDHIMVRLREIPEHDAASSSADPCYSVIGIYGVAGSGKTTFAGYIQDYIKEECKDEKLFDTIMCIHVTETFSVDDIFHEMLKYITGDSHSNISDRGALDKKLKEALCGKRFFLILDDLWVKNKNDQHLEELISPLNVGLKGSKILVTARTKEAAGALGADKFIEMPDLDEDQYLAMFMHYALSDTRVALQEFEQVGREIAKKLHRSPIAAVTVA

HMMPfam: PF00931
IPR002182
339-601 NB-ARC,NBS
NB-ARC

YSVIGIYGVAGSGKTTFAGYIQDYIKEECKDEKLFDTIMCIHVTETFSVDDIFHEMLKYITGDSHSNISDRGALDKKLKEALCGKRFFLILDDLWVKNKNDQHLEELISPLNVGLKGSKILVTARTKEAAGALGADKFIEMPDLDEDQYLAMFMHYALSDTRVALQEFEQVGREIAKKLHRSPIAAVTVAGRLGANPNISFWKNVAKLDMLNYTMDALWWSYQQLDPDIRRCFEFCSIFPRKFKLEKDQLVRLWTAQGFVKTS

Gene3D: G3DSA:3.40.50.300
341-410 G3DSA:3.40.50.300

VIGIYGVAGSGKTTFAGYIQDYIKEECKDEKLFDTIMCIHVTETFSVDDIFHEMLKYITGDSHSNISDRG

FPrintScan: PR00364
IPR000767
341-356 DISEASERSIST
Disease resistance protein

VIGIYGVAGSGKTTFA

FPrintScan: PR00364
IPR000767
419-433 DISEASERSIST
Disease resistance protein

ALCGKRFFLILDDLW

superfamily: SSF52058
637-1061 SSF52058,LRR

TIHDLLHDLLVKVAGNDCFRIENRWSKQGECQEDVPRDVRHLFVQKYDGELITRKILGLENLRTLIICVVEENRPVEEKVIESMCVRLLKLRVLAIAFNKKCRSTSNPSDKFLVPESITQLKHLRYLAFRKSDNCKVILPSALAKLLHIQLLDFGLGKISDFTCAADLINLRHIFCWDVSFPNIGTLSSLQRIPFFRLRNEQGYEIKQLRDLNKIRGMLVVNGFENVKSKEEALEANLAAKERLTELILCFLTSHTRGNGNAEVAAEVLEGLCPPVGLEALLIYDYNGSRYPDWMVGKLTGGPKNLKLLEIYGCSRLGPGPQLEAFPHLRMLNLEDCSWDALPGNLEHLTSLKALKIEHCMNIRSLPTLPQSLKLFILRCCDVELMKSCETEGDPNWHKIKHIPDKMVSGQPHSIYHIRRMFRVS

HMMPanther: PTHR23155
673-1065 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

RDVRHLFVQKYDGELITRKILGLENLRTLIICVVEENRPVEEKVIESMCVRLLKLRVLAIAFNKKCRSTSNPSDKFLVPESITQLKHLRYLAFRKSDNCKVILPSALAKLLHIQLLDFGLGKISDFTCAADLINLRHIFCWDVSFPNIGTLSSLQRIPFFRLRNEQGYEIKQLRDLNKIRGMLVVNGFENVKSKEEALEANLAAKERLTELILCFLTSHTRGNGNAEVAAEVLEGLCPPVGLEALLIYDYNGSRYPDWMVGKLTGGPKNLKLLEIYGCSRLGPGPQLEAFPHLRMLNLEDCSWDALPGNLEHLTSLKALKIEHCMNIRSLPTLPQSLKLFILRCCDVELMKSCETEGDPNWHKIKHIPDKMVSGQPHSIYHIRRMFRVSAPVP

HMMPanther: PTHR23155:SF143
673-1065 PTHR23155:SF143,OS04G0325300 PROTEIN (FRAGMENT)

RDVRHLFVQKYDGELITRKILGLENLRTLIICVVEENRPVEEKVIESMCVRLLKLRVLAIAFNKKCRSTSNPSDKFLVPESITQLKHLRYLAFRKSDNCKVILPSALAKLLHIQLLDFGLGKISDFTCAADLINLRHIFCWDVSFPNIGTLSSLQRIPFFRLRNEQGYEIKQLRDLNKIRGMLVVNGFENVKSKEEALEANLAAKERLTELILCFLTSHTRGNGNAEVAAEVLEGLCPPVGLEALLIYDYNGSRYPDWMVGKLTGGPKNLKLLEIYGCSRLGPGPQLEAFPHLRMLNLEDCSWDALPGNLEHLTSLKALKIEHCMNIRSLPTLPQSLKLFILRCCDVELMKSCETEGDPNWHKIKHIPDKMVSGQPHSIYHIRRMFRVSAPVP

Gene3D: G3DSA:3.80.10.10
688-834 G3DSA:3.80.10.10

ITRKILGLENLRTLIICVVEENRPVEEKVIESMCVRLLKLRVLAIAFNKKCRSTSNPSDKFLVPESITQLKHLRYLAFRKSDNCKVILPSALAKLLHIQLLDFGLGKISDFTCAADLINLRHIFCWDVSFPNIGTLSSLQRIPFFRL

Gene3D: G3DSA:3.80.10.10
937-1015 G3DSA:3.80.10.10

GGPKNLKLLEIYGCSRLGPGPQLEAFPHLRMLNLEDCSWDALPGNLEHLTSLKALKIEHCMNIRSLPTLPQSLKLFILR

FPrintScan: PR00364
IPR000767
983-999 DISEASERSIST
Disease resistance protein

EHLTSLKALKIEHCMNI


Diseases

Disease Pathogen Avirulence gene
Wheat leaf rust Puccinia triticina

List of References

Li Huang, Steven Brooks, Wanlong Li, John Fellers, James C Nelson, Bikram Gill
Evolution of new disease specificity at a simple resistance locus in a crop-weed complex: reconstitution of the Lr21 gene in wheat.
Genetics: 2009, 182(2);595-602
PubMed:19364806 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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