PRGDB00061487 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438286 (FJ842852) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGAGATGGAGTCTCTTCCTGCTTCCTCCTCCTCTGCAGAGTTCGATGTGTTCCTTAGTTTCAGAGGCGCTGACACACGCAACAACTTCACCGGCCATCTCCAAGATAAGCTCCTTGGGAAGGGGATCGACTCCTTCATCGACGACAGGCTCCGCCGAGGGGATGATATCACTGCGCTTTTCGACAGAATCGAGCAATCCAAGATTGCAATCGTCGTCTTCTCCGAAAACTACGCCAATTCCGTGTGGTGCCTCCGGGAGCTTGTGAAGATCCTCCAGTGCAGGGACAGAAACCAACAGCTGGTCATACCAATCTTATACAAAATTGACAAATCCAAGCTAAAAAATGTACGAAAAACGCGTTTTACAGGAGTCACGGAAGACGAGATTGTATCGTGGGAAGCTGCAATCTCCACAGCAGTCGACATATCCGGCTATGTAGTGGATCGCTATAGCACATCCGAGGCCAAACTTGTGAATGATATTGCTTTTGACACGTTCAAGAAGTTGAATGATTTGGCTCCCATTGGGAACACTGGCCTTGTAGGAATCGAATCCCGACTGAAGACTCTTGAAAAGCTTTTATCATGCCATGAGTTGGACTATGTTCATGTCATAGGCATTATTGGAATGGGTGGGATTGGTAAAACTACTCTTGCTGATTGCTTGTATGAACGAATGCGAGGCATGTTTGACGGTTGCTGCTTTCTTGCAAACATCCGTGAAAATTCAGGTAGAAGTGGGATAGAATCTTTGCAGAAGGAACTCTTCTCTACTTTACTAGATGATAGATATCTGAAGACCGGAGCTCCTGCAAGTGCACATCAGAGATTTCATCGCCGGCTTAAGAGCAAGAGGCTGCTTATTGTGCTTGATGATGTGAATGACGAGAAGCAGATAAAATATCTTATGGGGCACTGCAAATGGTATCAAGGAGGTAGTAGAATTATCATAACTACTAGAGACAGTAAATTGATCAAGGGGCAAAAGTATGTGCTCCCAAAACTGAATGATAGAGAAGCCTTGAAGCTCTTTTGCTTGAATGCGTTTGCTGGCTCCTGCCCTCTGAAAGAGTTTGAGGGTTTGACAAATATGTTTCTGGATTATGCTAGAGGCCACCCTTTAGCTCTTAAGGTTTTAGGATCTGATCTTCGCGATATGAACAAACTCTTCTGGGAAGCTAAGTTGGATTTACTGAAAAGTAAATCACATGGAGATATCTATGAAGTTCTGGAAACAAGCTATGAGGAGCTTAGCAATGATCAGAAGGATATTTTTTTGGATATTGCATGTTTCTTCAGATCGGAGAAGGTGGATTACGTAACAAGCCTTCTGAGTAGTCGTGGTGTGGATGTGTCAAGCCTGATACAAGATCTCGTTGACAAATGTCTCATCACTCGGTCTGATAATCGCATCGAGATGCATGACATGTTGCAGACCATGGGAAAGGAGATTAGTTTTAAACCGGAACCAATAGGAATAAGAGACGTTAGGTGGCTATCAAAACATCGCCCGCAGCACCACTGGCATCTCAGACTATGGGACAGTGAAGATATTTGTGACATGCTAACCAAAGGCTTGGGAACTGAGAAGATTAGAGGGATTTTCCTCGACACTTCAAAACGGGGAAAATTGCGTCTACGTCCCGACGCTTTCAAAGGGATGTACAATCTCAAATACCTGAAAATTTATGATTCTCGTTGCTCTCGTGGTTGTGAAGCTGTATTTAAACTCCATTTTAAGGGGCTTGATTTCCTTCCTGATGAGCTTGCATATCTACACTGGCATGGATTCCCGCTACAGCGTTTCCCTCTTGACTTCGACCCCAAGAACCTTGTAGACCTTAAGTTACCACATAGTGAATTAGAAGAAATTTGGGGTGATGATAAGGTTGCTGGAATGCTCAAATGGGTTGACCTCAGTCATTCCTCCAATTTATGCCGGCTTTTGGGTTTGGCTAAAGCTCATAATCTTGAAAGATTGAACTTAGAAGGATGTACAAGTTTGAAAATGTTACCATCATCGATTAATTGTTTGGAGAAGCTTGTCTACCTCAATCTCAGGGAATGCACAAGCCTTAAGAGCCTTCCAGAAGAAACCAAATCTCAATCCTTACAAACTCTTATTCTCAGTGGCTGCTCCAGCTTAAAGAAATTCCCACTGATCTCAGAAAGTATTGAAGTTCTACTTTTAGATGGCACAGCTATAAAGAGTCTTCCCGACTCCATTGAGACTTCAAGTAAACTTGCTTCCCTAAATCTGAAGAATTGCAAAAGGTTGAAGCATCTTTCTTCTAATCTTTACAAGCTGAAATGTCTACAAGAGCTGATTTTGTCAGGCTGCTCGCAACTAGAGGTTTTCCCAGAAATCAAGGAAGACATGGAATCTTTGGAGATTTTGCTTCTGGATGATACATCCATCACTGAGATGCCAAATATGAAGCATTTAAGCAATATCAAAACATTTTCATTATGTGGAACAAACTGTGAAGTTTCTGTCCGTGTGCTCTTCTTGTCACCTCCATTGGGATGCTCTCGGTTAACAGATCTTTACCTTTCGAGATGCAGTCTCTACCGAATCCCAAATATTAGTGGTAATGGCCTATCCTCTTTACAGTCTTTATGCTTAAGCGGAAACAGTATCGAGAACCTGCCAGAGAGCTTCAACCAACTTCACAATCTAAAATGGTTCGACTTAAAGTACTGCAAAAATCTCAAGTCTCTACCAGTCCTTCCACAGAACCTGCAATATCTGGATGCACATGAGTGCGAGTCACTTGAAACTTTAGCAAACCCATTGACGCCTTTGACGGTTAGAGAGAGGATCCATTCTATGTTCATGTTTAGCAACTGTTACAAACTGAACCAAGACGCACAAGAGAGTCTCGTGGGCCATGCTCGCATCAAAAGTCAGTTGATGGCTAATGCATCTGTTAAGCGTTATTATCGGGGATTCATCCCAGAGCCTCTGGTTGGAGTCTGTTTTCCGGCAACTGAAATACCAAGCTGGTTCTTCTACCAAAGACTAGGACGTTCACTAGACATCTCATTGCCTCCGCACTGGTGTGACACTAACTTTGTTGGACTTGCCTTCTCAGTGGTTGTCTCATTCAAAGAATATGAAGACTGTGCCAAACGTTTCTCGGTTAAATTTTCTGGCAAATTCGAGGATCAAGACGGTTCATTTACACGATTTAATTTTACTCTCGCCGGCTGGAACGAACCATGTGGAACACTTCGCCATGAACCTAGAAAGCTTACTTCTGACCACGTTTTTATGGGATACAATAGTTGCTTCCAGGTCAAGAAGCTCCATGGAGAGAGTAACAGTTGCTGTTACACAAAGGCTTCGTTCAAATTCTATGCAACGGATGATGAAAAGAAGAAGAAGCTTGAGATGTGTGAGGTGATAAAATGTGGGATGAGTTTAGTGTATGTTCCAGAAGATGATGAAGAGTGTATGTTGTTGAAGAAGACAAATCTGGTTCAGTTGAGTTGGAAGACCGAACCAAGCTGTTCCAACGGTTCTGATGATGTCAACATCATGGATGATCTTAGACCCAAGAGGGGACGATGCCAGGTTGGTGGTGGTGATGAAGAACCATATCATAAGAGAACGAAGTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MEMESLPASSSSAEFDVFLSFRGADTRNNFTGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRKTRFTGVTEDEIVSWEAAISTAVDISGYVVDRYSTSEAKLVNDIAFDTFKKLNDLAPIGNTGLVGIESRLKTLEKLLSCHELDYVHVIGIIGMGGIGKTTLADCLYERMRGMFDGCCFLANIRENSGRSGIESLQKELFSTLLDDRYLKTGAPASAHQRFHRRLKSKRLLIVLDDVNDEKQIKYLMGHCKWYQGGSRIIITTRDSKLIKGQKYVLPKLNDREALKLFCLNAFAGSCPLKEFEGLTNMFLDYARGHPLALKVLGSDLRDMNKLFWEAKLDLLKSKSHGDIYEVLETSYEELSNDQKDIFLDIACFFRSEKVDYVTSLLSSRGVDVSSLIQDLVDKCLITRSDNRIEMHDMLQTMGKEISFKPEPIGIRDVRWLSKHRPQHHWHLRLWDSEDICDMLTKGLGTEKIRGIFLDTSKRGKLRLRPDAFKGMYNLKYLKIYDSRCSRGCEAVFKLHFKGLDFLPDELAYLHWHGFPLQRFPLDFDPKNLVDLKLPHSELEEIWGDDKVAGMLKWVDLSHSSNLCRLLGLAKAHNLERLNLEGCTSLKMLPSSINCLEKLVYLNLRECTSLKSLPEETKSQSLQTLILSGCSSLKKFPLISESIEVLLLDGTAIKSLPDSIETSSKLASLNLKNCKRLKHLSSNLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLLDDTSITEMPNMKHLSNIKTFSLCGTNCEVSVRVLFLSPPLGCSRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHNLKWFDLKYCKNLKSLPVLPQNLQYLDAHECESLETLANPLTPLTVRERIHSMFMFSNCYKLNQDAQESLVGHARIKSQLMANASVKRYYRGFIPEPLVGVCFPATEIPSWFFYQRLGRSLDISLPPHWCDTNFVGLAFSVVVSFKEYEDCAKRFSVKFSGKFEDQDGSFTRFNFTLAGWNEPCGTLRHEPRKLTSDHVFMGYNSCFQVKKLHGESNSCCYTKASFKFYATDDEKKKKLEMCEVIKCGMSLVYVPEDDEECMLLKKTNLVQLSWKTEPSCSNGSDDVNIMDDLRPKRGRCQVGGGDEEPYHKRTK |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
3-146 | TIR Toll-Interleukin receptor
|
MESLPASSSSAEFDVFLSFRGADTRNNFTGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRKTRFTGVTEDEIVSWEAAISTAVDISGY |
| Gene3D: G3DSA:3.40.50.10140 | 11-133 | G3DSA:3.40.50.10140 | SSAEFDVFLSFRGADTRNNFTGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRKTRFTGVTEDEIVSW |
| ProfileScan: PS50104 IPR000157
|
13-119 | TIR Toll-Interleukin receptor
|
AEFDVFLSFRGADTRNNFTGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRK |
| HMMSmart: SM00255 IPR000157
|
14-143 | TIR Toll-Interleukin receptor
|
EFDVFLSFRGADTRNNFTGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRKTRFTGVTEDEIVSWEAAISTAVDI |
| HMMPfam: PF01582 IPR000157
|
17-122 | TIR Toll-Interleukin receptor
|
VFLSFRGADTRNNFTGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRKTRF |
| HMMPanther: PTHR11017:SF20 | 31-1041 | PTHR11017:SF20,SUBFAMILY NOT NAMED | TGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRKTRFTGVTEDEIVSWEAAISTAVDISGYVVDRYSTSEAKLVNDIAFDTFKKLNDLAPIGNTGLVGIESRLKTLEKLLSCHELDYVHVIGIIGMGGIGKTTLADCLYERMRGMFDGCCFLANIRENSGRSGIESLQKELFSTLLDDRYLKTGAPASAHQRFHRRLKSKRLLIVLDDVNDEKQIKYLMGHCKWYQGGSRIIITTRDSKLIKGQKYVLPKLNDREALKLFCLNAFAGSCPLKEFEGLTNMFLDYARGHPLALKVLGSDLRDMNKLFWEAKLDLLKSKSHGDIYEVLETSYEELSNDQKDIFLDIACFFRSEKVDYVTSLLSSRGVDVSSLIQDLVDKCLITRSDNRIEMHDMLQTMGKEISFKPEPIGIRDVRWLSKHRPQHHWHLRLWDSEDICDMLTKGLGTEKIRGIFLDTSKRGKLRLRPDAFKGMYNLKYLKIYDSRCSRGCEAVFKLHFKGLDFLPDELAYLHWHGFPLQRFPLDFDPKNLVDLKLPHSELEEIWGDDKVAGMLKWVDLSHSSNLCRLLGLAKAHNLERLNLEGCTSLKMLPSSINCLEKLVYLNLRECTSLKSLPEETKSQSLQTLILSGCSSLKKFPLISESIEVLLLDGTAIKSLPDSIETSSKLASLNLKNCKRLKHLSSNLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLLDDTSITEMPNMKHLSNIKTFSLCGTNCEVSVRVLFLSPPLGCSRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHNLKWFDLKYCKNLKSLPVLPQNLQYLDAHECESLETLANPLTPLTVRERIHSMFMFSNCYKLNQDAQESLVGHARIKSQLMANASVKRYYRGFIPEPLVGVCFPATEIPSWFFYQRLGRSLDISLPPHWCDTNFVGLAFSVVVSFKEYE |
| HMMPanther: PTHR11017 | 31-1041 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | TGHLQDKLLGKGIDSFIDDRLRRGDDITALFDRIEQSKIAIVVFSENYANSVWCLRELVKILQCRDRNQQLVIPILYKIDKSKLKNVRKTRFTGVTEDEIVSWEAAISTAVDISGYVVDRYSTSEAKLVNDIAFDTFKKLNDLAPIGNTGLVGIESRLKTLEKLLSCHELDYVHVIGIIGMGGIGKTTLADCLYERMRGMFDGCCFLANIRENSGRSGIESLQKELFSTLLDDRYLKTGAPASAHQRFHRRLKSKRLLIVLDDVNDEKQIKYLMGHCKWYQGGSRIIITTRDSKLIKGQKYVLPKLNDREALKLFCLNAFAGSCPLKEFEGLTNMFLDYARGHPLALKVLGSDLRDMNKLFWEAKLDLLKSKSHGDIYEVLETSYEELSNDQKDIFLDIACFFRSEKVDYVTSLLSSRGVDVSSLIQDLVDKCLITRSDNRIEMHDMLQTMGKEISFKPEPIGIRDVRWLSKHRPQHHWHLRLWDSEDICDMLTKGLGTEKIRGIFLDTSKRGKLRLRPDAFKGMYNLKYLKIYDSRCSRGCEAVFKLHFKGLDFLPDELAYLHWHGFPLQRFPLDFDPKNLVDLKLPHSELEEIWGDDKVAGMLKWVDLSHSSNLCRLLGLAKAHNLERLNLEGCTSLKMLPSSINCLEKLVYLNLRECTSLKSLPEETKSQSLQTLILSGCSSLKKFPLISESIEVLLLDGTAIKSLPDSIETSSKLASLNLKNCKRLKHLSSNLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLLDDTSITEMPNMKHLSNIKTFSLCGTNCEVSVRVLFLSPPLGCSRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHNLKWFDLKYCKNLKSLPVLPQNLQYLDAHECESLETLANPLTPLTVRERIHSMFMFSNCYKLNQDAQESLVGHARIKSQLMANASVKRYYRGFIPEPLVGVCFPATEIPSWFFYQRLGRSLDISLPPHWCDTNFVGLAFSVVVSFKEYE |
| superfamily: SSF52540 | 181-407 | SSF52540 | LVGIESRLKTLEKLLSCHELDYVHVIGIIGMGGIGKTTLADCLYERMRGMFDGCCFLANIRENSGRSGIESLQKELFSTLLDDRYLKTGAPASAHQRFHRRLKSKRLLIVLDDVNDEKQIKYLMGHCKWYQGGSRIIITTRDSKLIKGQKYVLPKLNDREALKLFCLNAFAGSCPLKEFEGLTNMFLDYARGHPLALKVLGSDLRDMNKLFWEAKLDLLKSKSHGDI |
| Gene3D: G3DSA:3.40.50.300 | 181-327 | G3DSA:3.40.50.300 | LVGIESRLKTLEKLLSCHELDYVHVIGIIGMGGIGKTTLADCLYERMRGMFDGCCFLANIRENSGRSGIESLQKELFSTLLDDRYLKTGAPASAHQRFHRRLKSKRLLIVLDDVNDEKQIKYLMGHCKWYQGGSRIIITTRDSKLIK |
| HMMPfam: PF00931 IPR002182
|
191-439 | NB-ARC,NBS NB-ARC
|
LEKLLSCHELDYVHVIGIIGMGGIGKTTLADCLYERMRGMFDGCCFLANIRENSGRSGIESLQKELFSTLLDDRYLKTGAPASAHQRFHRRLKSKRLLIVLDDVNDEKQIKYLMGHCKWYQGGSRIIITTRDSKLIKGQKYVLPKLNDREALKLFCLNAFAGSCPLKEFEGLTNMFLDYARGHPLALKVLGSDLRDMNKLFWEAKLDLLKSKSHGDIYEVLETSYEELSNDQKDIFLDIACFFRSEKVD |
| FPrintScan: PR00364 IPR000767
|
205-220 | DISEASERSIST Disease resistance protein
|
VIGIIGMGGIGKTTLA |
| FPrintScan: PR00364 IPR000767
|
281-295 | DISEASERSIST Disease resistance protein
|
RLKSKRLLIVLDDVN |
| FPrintScan: PR00364 IPR000767
|
370-384 | DISEASERSIST Disease resistance protein
|
ARGHPLALKVLGSDL |
| superfamily: SSF46785 | 405-524 | SSF46785 | GDIYEVLETSYEELSNDQKDIFLDIACFFRSEKVDYVTSLLSSRGVDVSSLIQDLVDKCLITRSDNRIEMHDMLQTMGKEISFKPEPIGIRDVRWLSKHRPQHHWHLRLWDSEDICDMLT |
| superfamily: SSF52058 | 535-918 | SSF52058,LRR | IFLDTSKRGKLRLRPDAFKGMYNLKYLKIYDSRCSRGCEAVFKLHFKGLDFLPDELAYLHWHGFPLQRFPLDFDPKNLVDLKLPHSELEEIWGDDKVAGMLKWVDLSHSSNLCRLLGLAKAHNLERLNLEGCTSLKMLPSSINCLEKLVYLNLRECTSLKSLPEETKSQSLQTLILSGCSSLKKFPLISESIEVLLLDGTAIKSLPDSIETSSKLASLNLKNCKRLKHLSSNLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLLDDTSITEMPNMKHLSNIKTFSLCGTNCEVSVRVLFLSPPLGCSRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHNLKWFDLKYCKNLKSLPVLPQNLQYL |
| Gene3D: G3DSA:3.80.10.10 | 545-825 | G3DSA:3.80.10.10 | LRLRPDAFKGMYNLKYLKIYDSRCSRGCEAVFKLHFKGLDFLPDELAYLHWHGFPLQRFPLDFDPKNLVDLKLPHSELEEIWGDDKVAGMLKWVDLSHSSNLCRLLGLAKAHNLERLNLEGCTSLKMLPSSINCLEKLVYLNLRECTSLKSLPEETKSQSLQTLILSGCSSLKKFPLISESIEVLLLDGTAIKSLPDSIETSSKLASLNLKNCKRLKHLSSNLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLLDDTSITEMPNMKHLSNIKTFSLC |
| HMMPfam: PF07725 IPR011713
|
611-630 | LRR_3 Leucine-rich repeat 3
|
NLVDLKLPHSELEEIWGDDK |
| ProfileScan: PS51450 | 657-679 | LRR,Leucine-rich repeat profile. | NLERLNLEGCTSLKMLPSSINCL |
| ProfileScan: PS51450 | 681-703 | LRR,Leucine-rich repeat profile. | KLVYLNLRECTSLKSLPEETKSQ |
| FPrintScan: PR00364 IPR000767
|
700-716 | DISEASERSIST Disease resistance protein
|
TKSQSLQTLILSGCSSL |
| ProfileScan: PS51450 | 725-746 | LRR,Leucine-rich repeat profile. | SIEVLLLDGTAIKSLPDSIETS |
| ProfileScan: PS51450 | 748-771 | LRR,Leucine-rich repeat profile. | KLASLNLKNCKRLKHLSSNLYKLK |
| ProfileScan: PS51450 | 796-817 | LRR,Leucine-rich repeat profile. | SLEILLLDDTSITEMPNMKHLS |
| Gene3D: G3DSA:3.80.10.10 | 842-934 | G3DSA:3.80.10.10 | LGCSRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHNLKWFDLKYCKNLKSLPVLPQNLQYLDAHECESLETLANPLT |
| HMMPfam: PF13855 | 845-903 | LRR_8,Leucine rich repeat | SRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHNLKWFDLKYCK |
| ProfileScan: PS51450 | 846-867 | LRR,Leucine-rich repeat profile. | RLTDLYLSRCSLYRIPNISGNG |
| ProfileScan: PS51450 | 870-891 | LRR,Leucine-rich repeat profile. | SLQSLCLSGNSIENLPESFNQL |
| ProfileScan: PS51450 | 893-915 | LRR,Leucine-rich repeat profile. | NLKWFDLKYCKNLKSLPVLPQNL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
