PRGDB00061488 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438284 (FJ842851) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGAACCGAGTCTAGACTCAGATGAAGGGAACATGGACAACTGTGAACCAGAGCAGAGGCTGGAAGCGTTTATTTCACGGTTTAACTCGGAACTTAGGAAACAGAGGCAAGAGCATATCATCACAAACGAAGATTTAAAGGCATCTTCCCAAGGATCATCTAGTGGAGGACTACCCGCGGTCTACATTTATTGCGCAAATACATTACAGTACTCCTTCGCTAGCCACCTCTCCATGGGTTTCCACAGAAAAGGCATATATGCATCTGCAAATAGCAATGAGACTCTGGATGTGATGGAGGGAGCTAGCGCTTCTGTGGTGGTTTTTTCGAAGAACTACTTGTCCTCCCCCTCATGCCTGGATAAGCTCGTGAGGGTTCTTCAGTGCAGGAGGAAAAGCGGCCAGCTGGTGGTTCCAGTGTTCTATGACGTCAGTCCATCTAATGTGGAGGTGCAGGAGCAAGAGTCAGTTGATCGGATAAGCGCGCTCCAAGAGCTGAGAGAATTCACAGGCTACCAGTTTAGAGAGGGATGCAGTGAGTGCGAACTCGTGGAAGAGATTGTTAAAGATGTCTATGAAAAACTCCTTCCCGCGGAACAAATAGGAATCAGCTTAAGGCTCCTAGAGATAGAACACTTGCTTTGCAAACAGCCATGGGGTATCCGTCGCTTAGGAATCTGGGGTATGCCCGGCATAGGCAAGACAACACTTGCTAAAGCAGTTTTTGATCAGATCTCTGGAGGCTATGAAGCTTTTTTTTTCATCAAACACTTTGACAAAGCTTTCAACGAGAAGGGACTTCACTGTTTGTTGGAGGAACATTTTGGGAACATTTTGATGGACTTGCCTCGCGTATGCAGTAGCATTACAAGACCTAGCTTCCCCGGGGATATATTAAGCAAGAAGAGAACTCTTGTTGTTCTTGATGATGTGCAAAATCCTTTAGTTGCCGAGTCTTTTCTCGGTGGGTTTCATTGGTTTGGTCCGGGAAGCCTAATTATCATAACCTCCAGAGATAAGCAAGTTTTCCGCCATTGTCAAATCAATCACGTGTATGAGGTTCAGAGCTTAAATGAGAATGAGGCTCTGCAGCTATTCTCTCACCATGCTATTGGAGAAAATATAAGAGAAAAAAAATTCATGAAACTATCAATGGAAGTGATTGACTATGCTAGTGGAAATCCATTAGCTCTCAGCTATTACGGAAAAGAGCTCAAGGGAAAGAAACTGTCAGAAATGAGGACCACATTCCTCAAACACAAGCTACGTACGCCATATAAGATTCAAGACTTATTCAAGAGAAGCTATGAAGCACTTAATGACAGCGAGAAGAACATTTTTCTGGACATTGCTTGTTTTTTCAAGGGAGAAAATGTTGACTATGTGATGCAACTGCTTGAGGGGTGTGGATTTCTACCACATATTGGGATTGATGTTCTTGTGGAGAAGTGTCTGGTTACTATTTCAGAAAACAGAGTGAAAATGCATAGAATAATTCAAGACTTCGGCAGAGAAATAATCAACGGAGAAGTAGTACAGATCGAGCGGCGTCGCAGACTATGGGAACCTTGGACCATCAAATTTCTACTTGAAGATGACAAACTCAAAGCAAACGTCAAATCAACCTATACACGTCCTCTGGGCACTGTAGACATAGAAGGCATATTTCTAGACGCATCGAACTTAAGCTTTGATGTGAAGTCTGGTGCTTTTAAGCATATGCTAAGCCTTAGATTCCTGAAGATTTATTGTTCCAGTTATGAAAAAGATAGTAGAGTCCTCCTTCCCAAAGGACTTGATTCTCTGCCGTATGAGCTAAGACTCCTCCACTGGGAGAACTATCCTTTGAAATCCTTGCCACAAAAATTTGACCCATGCCACCTTGTTGAACTCAATTTGTCTTACAGTCAGCTTCAGAAACTTTGGGGAGGAACTAAGAATCTCAAGATGCTGAAGGTGGTCAGGCTGTGTCATTCCCAGCAGCTAACTGATATTAACGATCTTTGTAAAGCTCAAGATCTCGAGCTATTAGATCTCCAAGGGTGTACACAATTGCAGAGTTTTCCAGCCATGGGTCAGTTGCGGCTTCTCAGAGTTGTGAACCTTTCAGGTTGCACAGAGATCAGAAGCTTCCCAGAGGTTTCACCAAATATTAAGGAACTACATCTACAAGGAACTGGTATCAGAGAACTCCCAGTATCCACTGTGACCCTCTCCTCGCAAGTTAAGCTGAACAGAGAGCTTTCCAATCTTCTAACAGAATTCCCGGGAGTTTCAGATGTTATAAACCATGAGCGACTAACAAGCCTGATCAAACCCGTGTCAGCTAATCAACATCTTGGTAAACTTGTTCGCCTGAATATGAAAGATTGTGTTCATTTGACAAGTCTGCCTGACATGGCTGATTTAGAATTACTTCAAGTTCTTGATCTCTCTGGATGCTCAAATCTCAACGATATTCAGGGTTTCCCACGAAACCTGGAAGAATTATATCTTGCTGGGACGGCCATAAAAGAATTTCCACAGCTTCCCTTGAGTCTTGAAATCTTGAATGCACATGGTTGTGTGTCTCTTATATCAATTCCTATCGGTTTCGAGCAGCTTCCTAGGTACTACACATTCAGTAACTGTTTTGGTCTTTCGGAAAAAGTGGTCAACATTTTTGTAAAGAATGCTTTGACTAATGTTGAGCGCCTCGCAAGGGAGTATCATCAACAACAGAAACTCAACAAATCTCTAGCTTTCAGCTTCATTGGGCCTTCACCTGCAGGGGAAAATCTAACATTTGATATGCAACCAGGATCTTCTGTGATTATACAACTGGGCTCTTCTTGGAGAGATACGCTTGGAGTTGCCGTATTAGTACAAGTTACATTTTCGAAGGATTACTGCGAGGCTAGTGGTGGTTTTAACGTTACTTGTGTTTGCAGATGGAAAGATAAGGATTATGTCTCTCATAAGCGAGAAAAAGACTTCCATTGTTGGCCTCCAGAGGAAGAAGGTGTTTCAAAGGACCACACGTTCGTCTTCTGTGATCTCGATATTCATCCTGGTGCCTGTGAAGAAAATGATACCGGCATATTAGCTGATCTTGTCGTATTTGAGTTCTTTACTGTGAACAAGCAGAAGAAGCTATTAGATGAGAGTTGTACTGTGACGAAATGTGGAGTATATGTGATAACTGCTGCAGATCGAGATACAAGCCCTAACATGACTCCATCATTTGATTACCTGCAGGAGCTTTCTGATAATGATGCTCGAAACGTATATGATGGCTTAGACGAGGATGAAAGAACTTTATTTCTTTACATTGCGTGTCTGTTCAATGATGAGGAAGCTTATTTGTTGGCACCACTTAGCAATGGCTTGGAAATTAGTTCTGGGATCAAGATCTTAACCGATAAGTCTCTCATACATATATCTCCATACGGTGTTTTAGTACGAGAAGGCTTACTTCAGAAAATAGGTATGGAGATGATCAATAGACGGAGACAGGCGCAAGCTTTGACCAATTTAGCAGATATAGCCGGAGTGGATTCTCGGAAGTGGGATAATAACGCTAACATGATAGAGAACTTGCCTCACTCCTTCAAGATGCACTCTTCAATGTGCTTAGCCTTGAAGAAATTAGTTGATAGAGTCATGAAAATATTTCCTGAAATAGAAGCTGCTAGACCCGGATCTTCCACAGCGATACAGCCTCTCAACGAAGCTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MEPSLDSDEGNMDNCEPEQRLEAFISRFNSELRKQRQEHIITNEDLKASSQGSSSGGLPAVYIYCANTLQYSFASHLSMGFHRKGIYASANSNETLDVMEGASASVVVFSKNYLSSPSCLDKLVRVLQCRRKSGQLVVPVFYDVSPSNVEVQEQESVDRISALQELREFTGYQFREGCSECELVEEIVKDVYEKLLPAEQIGISLRLLEIEHLLCKQPWGIRRLGIWGMPGIGKTTLAKAVFDQISGGYEAFFFIKHFDKAFNEKGLHCLLEEHFGNILMDLPRVCSSITRPSFPGDILSKKRTLVVLDDVQNPLVAESFLGGFHWFGPGSLIIITSRDKQVFRHCQINHVYEVQSLNENEALQLFSHHAIGENIREKKFMKLSMEVIDYASGNPLALSYYGKELKGKKLSEMRTTFLKHKLRTPYKIQDLFKRSYEALNDSEKNIFLDIACFFKGENVDYVMQLLEGCGFLPHIGIDVLVEKCLVTISENRVKMHRIIQDFGREIINGEVVQIERRRRLWEPWTIKFLLEDDKLKANVKSTYTRPLGTVDIEGIFLDASNLSFDVKSGAFKHMLSLRFLKIYCSSYEKDSRVLLPKGLDSLPYELRLLHWENYPLKSLPQKFDPCHLVELNLSYSQLQKLWGGTKNLKMLKVVRLCHSQQLTDINDLCKAQDLELLDLQGCTQLQSFPAMGQLRLLRVVNLSGCTEIRSFPEVSPNIKELHLQGTGIRELPVSTVTLSSQVKLNRELSNLLTEFPGVSDVINHERLTSLIKPVSANQHLGKLVRLNMKDCVHLTSLPDMADLELLQVLDLSGCSNLNDIQGFPRNLEELYLAGTAIKEFPQLPLSLEILNAHGCVSLISIPIGFEQLPRYYTFSNCFGLSEKVVNIFVKNALTNVERLAREYHQQQKLNKSLAFSFIGPSPAGENLTFDMQPGSSVIIQLGSSWRDTLGVAVLVQVTFSKDYCEASGGFNVTCVCRWKDKDYVSHKREKDFHCWPPEEEGVSKDHTFVFCDLDIHPGACEENDTGILADLVVFEFFTVNKQKKLLDESCTVTKCGVYVITAADRDTSPNMTPSFDYLQELSDNDARNVYDGLDEDERTLFLYIACLFNDEEAYLLAPLSNGLEISSGIKILTDKSLIHISPYGVLVREGLLQKIGMEMINRRRQAQALTNLADIAGVDSRKWDNNANMIENLPHSFKMHSSMCLALKKLVDRVMKIFPEIEAARPGSSTAIQPLNEA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
47-172 | TIR Toll-Interleukin receptor
|
KASSQGSSSGGLPAVYIYCANTLQYSFASHLSMGFHRKGIYASANSNETLDVMEGASASVVVFSKNYLSSPSCLDKLVRVLQCRRKSGQLVVPVFYDVSPSNVEVQEQESVDRISALQELREFTGY |
| HMMPanther: PTHR11017 | 49-1160 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | SSQGSSSGGLPAVYIYCANTLQYSFASHLSMGFHRKGIYASANSNETLDVMEGASASVVVFSKNYLSSPSCLDKLVRVLQCRRKSGQLVVPVFYDVSPSNVEVQEQESVDRISALQELREFTGYQFREGCSECELVEEIVKDVYEKLLPAEQIGISLRLLEIEHLLCKQPWGIRRLGIWGMPGIGKTTLAKAVFDQISGGYEAFFFIKHFDKAFNEKGLHCLLEEHFGNILMDLPRVCSSITRPSFPGDILSKKRTLVVLDDVQNPLVAESFLGGFHWFGPGSLIIITSRDKQVFRHCQINHVYEVQSLNENEALQLFSHHAIGENIREKKFMKLSMEVIDYASGNPLALSYYGKELKGKKLSEMRTTFLKHKLRTPYKIQDLFKRSYEALNDSEKNIFLDIACFFKGENVDYVMQLLEGCGFLPHIGIDVLVEKCLVTISENRVKMHRIIQDFGREIINGEVVQIERRRRLWEPWTIKFLLEDDKLKANVKSTYTRPLGTVDIEGIFLDASNLSFDVKSGAFKHMLSLRFLKIYCSSYEKDSRVLLPKGLDSLPYELRLLHWENYPLKSLPQKFDPCHLVELNLSYSQLQKLWGGTKNLKMLKVVRLCHSQQLTDINDLCKAQDLELLDLQGCTQLQSFPAMGQLRLLRVVNLSGCTEIRSFPEVSPNIKELHLQGTGIRELPVSTVTLSSQVKLNRELSNLLTEFPGVSDVINHERLTSLIKPVSANQHLGKLVRLNMKDCVHLTSLPDMADLELLQVLDLSGCSNLNDIQGFPRNLEELYLAGTAIKEFPQLPLSLEILNAHGCVSLISIPIGFEQLPRYYTFSNCFGLSEKVVNIFVKNALTNVERLAREYHQQQKLNKSLAFSFIGPSPAGENLTFDMQPGSSVIIQLGSSWRDTLGVAVLVQVTFSKDYCEASGGFNVTCVCRWKDKDYVSHKREKDFHCWPPEEEGVSKDHTFVFCDLDIHPGACEENDTGILADLVVFEFFTVNKQKKLLDESCTVTKCGVYVITAADRDTSPNMTPSFDYLQELSDNDARNVYDGLDEDERTLFLYIACLFNDEEAYLLAPLSNGLEISSGIKILTDKSLIHISPYGVLVREGLLQKIGMEMI |
| HMMPanther: PTHR11017:SF20 | 49-1160 | PTHR11017:SF20,SUBFAMILY NOT NAMED | SSQGSSSGGLPAVYIYCANTLQYSFASHLSMGFHRKGIYASANSNETLDVMEGASASVVVFSKNYLSSPSCLDKLVRVLQCRRKSGQLVVPVFYDVSPSNVEVQEQESVDRISALQELREFTGYQFREGCSECELVEEIVKDVYEKLLPAEQIGISLRLLEIEHLLCKQPWGIRRLGIWGMPGIGKTTLAKAVFDQISGGYEAFFFIKHFDKAFNEKGLHCLLEEHFGNILMDLPRVCSSITRPSFPGDILSKKRTLVVLDDVQNPLVAESFLGGFHWFGPGSLIIITSRDKQVFRHCQINHVYEVQSLNENEALQLFSHHAIGENIREKKFMKLSMEVIDYASGNPLALSYYGKELKGKKLSEMRTTFLKHKLRTPYKIQDLFKRSYEALNDSEKNIFLDIACFFKGENVDYVMQLLEGCGFLPHIGIDVLVEKCLVTISENRVKMHRIIQDFGREIINGEVVQIERRRRLWEPWTIKFLLEDDKLKANVKSTYTRPLGTVDIEGIFLDASNLSFDVKSGAFKHMLSLRFLKIYCSSYEKDSRVLLPKGLDSLPYELRLLHWENYPLKSLPQKFDPCHLVELNLSYSQLQKLWGGTKNLKMLKVVRLCHSQQLTDINDLCKAQDLELLDLQGCTQLQSFPAMGQLRLLRVVNLSGCTEIRSFPEVSPNIKELHLQGTGIRELPVSTVTLSSQVKLNRELSNLLTEFPGVSDVINHERLTSLIKPVSANQHLGKLVRLNMKDCVHLTSLPDMADLELLQVLDLSGCSNLNDIQGFPRNLEELYLAGTAIKEFPQLPLSLEILNAHGCVSLISIPIGFEQLPRYYTFSNCFGLSEKVVNIFVKNALTNVERLAREYHQQQKLNKSLAFSFIGPSPAGENLTFDMQPGSSVIIQLGSSWRDTLGVAVLVQVTFSKDYCEASGGFNVTCVCRWKDKDYVSHKREKDFHCWPPEEEGVSKDHTFVFCDLDIHPGACEENDTGILADLVVFEFFTVNKQKKLLDESCTVTKCGVYVITAADRDTSPNMTPSFDYLQELSDNDARNVYDGLDEDERTLFLYIACLFNDEEAYLLAPLSNGLEISSGIKILTDKSLIHISPYGVLVREGLLQKIGMEMI |
| ProfileScan: PS50104 IPR000157
|
69-154 | TIR Toll-Interleukin receptor
|
LQYSFASHLSMGFHRKGIYASANSNETLDVMEGASASVVVFSKNYLSSPSCLDKLVRVLQCRRKSGQLVVPVFYDVSPSNVEVQEQ |
| Gene3D: G3DSA:3.40.50.10140 | 92-155 | G3DSA:3.40.50.10140 | SNETLDVMEGASASVVVFSKNYLSSPSCLDKLVRVLQCRRKSGQLVVPVFYDVSPSNVEVQEQE |
| HMMPfam: PF01582 IPR000157
|
94-165 | TIR Toll-Interleukin receptor
|
ETLDVMEGASASVVVFSKNYLSSPSCLDKLVRVLQCRRKSGQLVVPVFYDVSPSNVEVQEQESVDRISALQE |
| superfamily: SSF52540 | 200-428 | SSF52540 | QIGISLRLLEIEHLLCKQPWGIRRLGIWGMPGIGKTTLAKAVFDQISGGYEAFFFIKHFDKAFNEKGLHCLLEEHFGNILMDLPRVCSSITRPSFPGDILSKKRTLVVLDDVQNPLVAESFLGGFHWFGPGSLIIITSRDKQVFRHCQINHVYEVQSLNENEALQLFSHHAIGENIREKKFMKLSMEVIDYASGNPLALSYYGKELKGKKLSEMRTTFLKHKLRTPYKI |
| Gene3D: G3DSA:3.40.50.300 | 212-264 | G3DSA:3.40.50.300 | HLLCKQPWGIRRLGIWGMPGIGKTTLAKAVFDQISGGYEAFFFIKHFDKAFNE |
| HMMPfam: PF00931 IPR002182
|
217-473 | NB-ARC,NBS NB-ARC
|
QPWGIRRLGIWGMPGIGKTTLAKAVFDQISGGYEAFFFIKHFDKAFNEKGLHCLLEEHFGNILMDLPRVCSSITRPSFPGDILSKKRTLVVLDDVQNPLVAESFLGGFHWFGPGSLIIITSRDKQVFRHCQINHVYEVQSLNENEALQLFSHHAIGENIREKKFMKLSMEVIDYASGNPLALSYYGKELKGKKLSEMRTTFLKHKLRTPYKIQDLFKRSYEALNDSEKNIFLDIACFFKGENVDYVMQLLEGCGFLP |
| FPrintScan: PR00364 IPR000767
|
223-238 | DISEASERSIST Disease resistance protein
|
RLGIWGMPGIGKTTLA |
| FPrintScan: PR00364 IPR000767
|
298-312 | DISEASERSIST Disease resistance protein
|
ILSKKRTLVVLDDVQ |
| Gene3D: G3DSA:3.40.50.300 | 298-313 | G3DSA:3.40.50.300 | ILSKKRTLVVLDDVQN |
| FPrintScan: PR00364 IPR000767
|
391-405 | DISEASERSIST Disease resistance protein
|
ASGNPLALSYYGKEL |
| superfamily: SSF46785 | 426-531 | SSF46785 | YKIQDLFKRSYEALNDSEKNIFLDIACFFKGENVDYVMQLLEGCGFLPHIGIDVLVEKCLVTISENRVKMHRIIQDFGREIINGEVVQIERRRRLWEPWTIKFLLE |
| superfamily: SSF52058 | 494-875 | SSF52058,LRR | KMHRIIQDFGREIINGEVVQIERRRRLWEPWTIKFLLEDDKLKANVKSTYTRPLGTVDIEGIFLDASNLSFDVKSGAFKHMLSLRFLKIYCSSYEKDSRVLLPKGLDSLPYELRLLHWENYPLKSLPQKFDPCHLVELNLSYSQLQKLWGGTKNLKMLKVVRLCHSQQLTDINDLCKAQDLELLDLQGCTQLQSFPAMGQLRLLRVVNLSGCTEIRSFPEVSPNIKELHLQGTGIRELPVSTVTLSSQVKLNRELSNLLTEFPGVSDVINHERLTSLIKPVSANQHLGKLVRLNMKDCVHLTSLPDMADLELLQVLDLSGCSNLNDIQGFPRNLEELYLAGTAIKEFPQLPLSLEILNAHGCVSLISIPIGFEQLPRYYTFS |
| Gene3D: G3DSA:3.80.10.10 | 566-765 | G3DSA:3.80.10.10 | VKSGAFKHMLSLRFLKIYCSSYEKDSRVLLPKGLDSLPYELRLLHWENYPLKSLPQKFDPCHLVELNLSYSQLQKLWGGTKNLKMLKVVRLCHSQQLTDINDLCKAQDLELLDLQGCTQLQSFPAMGQLRLLRVVNLSGCTEIRSFPEVSPNIKELHLQGTGIRELPVSTVTLSSQVKLNRELSNLLTEFPGVSDVINHE |
| HMMPfam: PF07725 IPR011713
|
627-646 | LRR_3 Leucine-rich repeat 3
|
HLVELNLSYSQLQKLWGGTK |
| Gene3D: G3DSA:3.80.10.10 | 766-869 | G3DSA:3.80.10.10 | RLTSLIKPVSANQHLGKLVRLNMKDCVHLTSLPDMADLELLQVLDLSGCSNLNDIQGFPRNLEELYLAGTAIKEFPQLPLSLEILNAHGCVSLISIPIGFEQLP |
| FPrintScan: PR00364 IPR000767
|
801-817 | DISEASERSIST Disease resistance protein
|
ADLELLQVLDLSGCSNL |
| HMMPfam: PF00560 IPR001611
|
806-822 | LRR_1 Leucine-rich repeat
|
LQVLDLSGCSNLNDIQG |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
