PRGDB00061489 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438282 (FJ842850) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGTTGACGGTGGCCTCCTCTTCTTCCTCGGTCCAATCACCACCGCAGAATCAAGTCTTCTTAAACTTTCGAGGGAAACAGTTGCGATACGGCTTCGTCAGCCATCTGGAGAAGGCGTTGAGAAGAGATGGGATCAACGTCTTTGTCGACAAAAACGAAACCAAAGGCAAAGATCTCAGCAGCCTCTTTTCCAGAATCGAAGAATCGAGGATCGCGCTAGCCATCTTCTCGAGCATGTATACGGAATCAAAGTGGTGCTTGAACGAGCTGGAGAAGATCAAGGAGTGCGTTGACTTGGGAAAACTCGTGGTCATCCCCATCTTCTACAAGGTGGACACAGACGATGTCAAAAATCTGAATGGAGTGTTCGGTGACAAGTTTTGGGAATTGGCTAAGACTTGTAATGGTGAAAAGTTCGAAAAGTGGAGACAAGCTTTACAGAATATTCCACAAAAACTAGGATTCACGTTAGGCGAAACGAGCGATGAAGGCGACTACATCAATCAAATTGTAGGGGAAGTCGTAAAGGTGTTATCTTCTGATCTGGAAAGACAAATCCCCATTGATAATCATCCTTGTTCAGGAGCAGAGAAAACGCCTGAAGCTGCACCTGACTTGCCCCCTCCTCTGTTTGGCATCGAAAATCGTCTCACACAATTGGAAATGAAGTTAGATTTTGAGTGCGAGAATACTATTACGATTGGTGTTGTTGGTATGCCTGGGATTGGTAAGACCACACTGACAAAGATGTTGTATGAAAAGTGGCGAGGCGAGTTCCTACGCTGTGTTTTCCTTCATGATGTCCGTAAATTGTGGAAAGACTGCAAGATGAATCGGGACATTTTCATGAGAGAGTTGTTGAAGGATGATGACGTGAAACAAGAAGTCTCTGACCTGTCACCCGAATCCTTGAAGGCTCTCCTACTCAGTAAGAAGTCTCTTGTTGTTCTTGATAACGTGAGTGACAAGAGTCAGATAGAGACTCTTCTCGGCGAATGCGACTGGATTAAGAGAGGTAGCAGGATCTTTATCACCACTAGCGATAAGTCAGTGATCAAAGGCGTGGTTGATGACACATATGAGGTCCTGAGACTATCTGGCAGAGACAGCTTTCAGTACTTCAGCTATTTTGCGTTTAGTGGTAAGCTCTGTCCTCCGGAGGATAACTTTTTGAATCTCTCTAGATTGTTTGTGGACTATGCCAAAGGCAATCCATTAGCTCTCAAGATATTGGGTGTTGAGCTTAGTGAGAAAGACGAGACTCACTGGGAAGAGACACTTCGCGATCTGGCACAGAGTCCCAATAAGACTATACAAAGTGTCTTGCAGATAAGCTACAATGGACTCGGTCAGTTTCATAAAGATGTGTTTCTTGACGTAGCTTGTTTCTTTAGATCAGGGGATGAGAATTACGTGAGGTGTTTGGTGGAGTCATGTGACACTGATCTTGTTGATGCTGCGAGTGAGATAAAGGATCTTGCCAGTAAATTTTTGATAAACATTTCTGGCGGACGAGTGGAGATGCATGATTTACTGTATACATTTGGCAAGGAACTTGGTTCACAAGGTTCGCGGAGGCTGTGGAACCATAAAGGCGTTGTTGGTGCGTTGAAGAAAAGAAAAGGAGCAGGCAGTGTGCGGGGCATTTTTCTTGACATGTCTGAACTGAAGGAGAAGCTTCCTCTGGACAGATGTACTTTCACTGAGATGCGTAATCTTAGGTACCTCAAATTCTATAGTTCTCGTTGTCATAGAGAATGCGAAGCTGACTGCAAACTAAACTTCCCTGAGGGACTTGATTTTCCCTTGGATGAAGTAAGATATCTCTTTTGGCTGAAGTTCCCTTTGAAGAAACTTCCGAAAGACTTCAACCCCAAGAATCTAACCGACCTTAACATGTCTTTCAGCGAGATTGAAGAGCTCTGGGAGGGTGTTAAGGATACACCGAAGTTAAAGTGGGTTGATCTTAGCCACTCAAGCAAGTTATGCAATCTGACAGGGTTGCTAAATGCTGAAAGCCTCCAGAGATTGAATCTCGAAGGGTGCACGAGTTTGGAGGAGTTGCCTCGTGAGATGGAACGTATGAAATGTCTTGTTTTCCTCAACATGAGAGGATGCACGAGTCTCCGGGTTCTTCCGCATATGAATCTGATCTCTATGAAAACTCTCATCCTCACCAACTGCTCAAGCCTTCAGACATTCCGGGTGGTTTCGGATAATCTAGAGACCCTACACTTGGATGGATCTGCAATTGGTCAACTTCCTACAAACATGTGGAAGCTCCAGCGACTGATTGTATTGAACTTGAAAGACTGCAAAATGTTGGTAGAACTTCCAGAATGCCTTGGGAAGCTGAAAGCTCTGCAAGAACTGGTGCTATCTGGTTGTTCAAAGCTCAAGACTTTTCCAATTCGCATTGAAAACATGAAATCTTTGCAGCTTTTATTGCTTGATGGGACATCAATTACAGACATGCCGAAGATATTGCAGTTGAATAGCTCAAAAGTGGAAGACTGGCCTGAACTAAGACGTGGTATGAACGGCATATCCTCATTGCAGCGTCTATGCTTAAGCGGGAATGATATAATCACCAACTTGCGAATCGACATCAGTCTACTATGTCATCTGAAACTGCTTGACCTGAAATTCTGCAAGAATCTCACTTCAATTCCACTGCTTCCACCAAATGTAGAGATCTTAGATGCACATGGCTGTGGCAAACTGAAGACAGTCGCAACGCCGATGGCCATTCTTAAGCATATGGAGAAGGTTCACTCTAAGTTCATTTTCACCAACTGCAACAGTCTTGAACAAGCTGCAAAGAATAGCATCACAACGTATGCTCAAAAGAAAAGCCAGCTAGATGCGCTTAGATGTTATAAAGAGGGACATGCTTCAGAAGCTTTATTCATTACTTCCTTTCCAGGGAGTGAAGTACCTTCATGGTTTGACCATCGCATGATTGGATCAACGTTAAAGCTGAAGTTTCCGCCACATTGGTGTGACAACAGACTTTCAACAATAGTTCTATGCGCTGTTGTTGCATTCCAAAATGAGATCAACAGTTTCTCAATAGAATGCACTTGTGAGTTCAAAAACGAACTTGGAACATGTACACGTTTCAGCAGCATTCTTGGTGGAGGTTGGATTGAACCACGCAAGATTGATTCAGACCATGTGTTTATCGGTTACACCAGTTCCTCCCACATAACAAATCATGTAGAAGGTTCGCCAGAACATCAAAAATGTGTTCCTACCGAGGCGTCAATAAAATTCAAAGTGATAGATGGAGCAGGTGAGATTGTGAATTGTGGTTTAAGTTTGGTGTACGAGGAACCAAACCATGTTGTTATCGAAGGAGATTGTAGTGGAACTTCCTCGGGAAGAGGTTTATCAGTTGTGGAGAGTACAATGAGCTTTGCTACTCGGTTCCTCTCTGTTATTTTGAGGTTGCTGCGAGCCATAGGTTTGCACCTCTTGGGAGCTAACTTTATCAGCTGGATGCTTAAGCGTCTCCCCCACCAAAGCATTGTCAGAAGCAAAGATCGGGAGATTAAGGGAGGTTACCTTGAAGGTAGAGAAAGGGGAGGATCAGGAACAGAGAAGGAAGCGCCATGGCTTGCAGACGAAAAGGATGATGATGAGGAGGAGAAGCATTTGCTCATGGTCTCTAACATCGCCATCGTCTTCGCTGTCTCCTATCTCCTATCACAACTCGCCACGTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MLTVASSSSSVQSPPQNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGFTLGETSDEGDYINQIVGEVVKVLSSDLERQIPIDNHPCSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVHSKFIFTNCNSLEQAAKNSITTYAQKKSQLDALRCYKEGHASEALFITSFPGSEVPSWFDHRMIGSTLKLKFPPHWCDNRLSTIVLCAVVAFQNEINSFSIECTCEFKNELGTCTRFSSILGGGWIEPRKIDSDHVFIGYTSSSHITNHVEGSPEHQKCVPTEASIKFKVIDGAGEIVNCGLSLVYEEPNHVVIEGDCSGTSSGRGLSVVESTMSFATRFLSVILRLLRAIGLHLLGANFISWMLKRLPHQSIVRSKDREIKGGYLEGRERGGSGTEKEAPWLADEKDDDEEEKHLLMVSNIAIVFAVSYLLSQLAT |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
5-155 | TIR Toll-Interleukin receptor
|
ASSSSSVQSPPQNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGF |
| ProfileScan: PS50104 IPR000157
|
15-152 | TIR Toll-Interleukin receptor
|
PQNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQK |
| HMMSmart: SM00255 IPR000157
|
16-152 | TIR Toll-Interleukin receptor
|
QNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQK |
| Gene3D: G3DSA:3.40.50.10140 | 18-147 | G3DSA:3.40.50.10140 | QVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQ |
| HMMPfam: PF01582 IPR000157
|
19-147 | TIR Toll-Interleukin receptor
|
VFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQ |
| HMMPanther: PTHR23155 | 26-949 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | KQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGFTLGETSDEGDYINQIVGEVVKVLSSDLERQIPIDNHPCSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVHSKFIFTNCNSLEQAAKNSITTYAQ |
| HMMPanther: PTHR23155:SF66 | 26-949 | PTHR23155:SF66,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) | KQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGFTLGETSDEGDYINQIVGEVVKVLSSDLERQIPIDNHPCSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVHSKFIFTNCNSLEQAAKNSITTYAQ |
| superfamily: SSF52540 | 193-438 | SSF52540 | CSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTI |
| Gene3D: G3DSA:3.40.50.300 | 210-357 | G3DSA:3.40.50.300 | LFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVD |
| HMMPfam: PF00931 IPR002182
|
214-466 | NB-ARC,NBS NB-ARC
|
ENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRS |
| FPrintScan: PR00364 IPR000767
|
233-248 | DISEASERSIST Disease resistance protein
|
TIGVVGMPGIGKTTLT |
| FPrintScan: PR00364 IPR000767
|
307-321 | DISEASERSIST Disease resistance protein
|
LLLSKKSLVVLDNVS |
| FPrintScan: PR00364 IPR000767
|
401-415 | DISEASERSIST Disease resistance protein
|
AKGNPLALKILGVEL |
| superfamily: SSF46785 | 436-538 | SSF46785 | KTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALK |
| superfamily: SSF52058 | 507-906 | SSF52058,LRR | EMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCG |
| Gene3D: G3DSA:3.80.10.10 | 558-728 | G3DSA:3.80.10.10 | EKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNC |
| HMMPfam: PF07725 IPR011713
|
627-646 | LRR_3 Leucine-rich repeat 3
|
NLTDLNMSFSEIEELWEGVK |
| FPrintScan: PR00364 IPR000767
|
715-731 | DISEASERSIST Disease resistance protein
|
MNLISMKTLILTNCSSL |
| Gene3D: G3DSA:3.80.10.10 | 740-925 | G3DSA:3.80.10.10 | NLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVH |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
