PRGDB00061489 (disease resistance protein)
disease resistance protein | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 227438282 (FJ842850) |
Gene Class | TNL |
Domain Type | NBS, TIR, LRR, Others |
Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGTTGACGGTGGCCTCCTCTTCTTCCTCGGTCCAATCACCACCGCAGAATCAAGTCTTCTTAAACTTTCGAGGGAAACAGTTGCGATACGGCTTCGTCAGCCATCTGGAGAAGGCGTTGAGAAGAGATGGGATCAACGTCTTTGTCGACAAAAACGAAACCAAAGGCAAAGATCTCAGCAGCCTCTTTTCCAGAATCGAAGAATCGAGGATCGCGCTAGCCATCTTCTCGAGCATGTATACGGAATCAAAGTGGTGCTTGAACGAGCTGGAGAAGATCAAGGAGTGCGTTGACTTGGGAAAACTCGTGGTCATCCCCATCTTCTACAAGGTGGACACAGACGATGTCAAAAATCTGAATGGAGTGTTCGGTGACAAGTTTTGGGAATTGGCTAAGACTTGTAATGGTGAAAAGTTCGAAAAGTGGAGACAAGCTTTACAGAATATTCCACAAAAACTAGGATTCACGTTAGGCGAAACGAGCGATGAAGGCGACTACATCAATCAAATTGTAGGGGAAGTCGTAAAGGTGTTATCTTCTGATCTGGAAAGACAAATCCCCATTGATAATCATCCTTGTTCAGGAGCAGAGAAAACGCCTGAAGCTGCACCTGACTTGCCCCCTCCTCTGTTTGGCATCGAAAATCGTCTCACACAATTGGAAATGAAGTTAGATTTTGAGTGCGAGAATACTATTACGATTGGTGTTGTTGGTATGCCTGGGATTGGTAAGACCACACTGACAAAGATGTTGTATGAAAAGTGGCGAGGCGAGTTCCTACGCTGTGTTTTCCTTCATGATGTCCGTAAATTGTGGAAAGACTGCAAGATGAATCGGGACATTTTCATGAGAGAGTTGTTGAAGGATGATGACGTGAAACAAGAAGTCTCTGACCTGTCACCCGAATCCTTGAAGGCTCTCCTACTCAGTAAGAAGTCTCTTGTTGTTCTTGATAACGTGAGTGACAAGAGTCAGATAGAGACTCTTCTCGGCGAATGCGACTGGATTAAGAGAGGTAGCAGGATCTTTATCACCACTAGCGATAAGTCAGTGATCAAAGGCGTGGTTGATGACACATATGAGGTCCTGAGACTATCTGGCAGAGACAGCTTTCAGTACTTCAGCTATTTTGCGTTTAGTGGTAAGCTCTGTCCTCCGGAGGATAACTTTTTGAATCTCTCTAGATTGTTTGTGGACTATGCCAAAGGCAATCCATTAGCTCTCAAGATATTGGGTGTTGAGCTTAGTGAGAAAGACGAGACTCACTGGGAAGAGACACTTCGCGATCTGGCACAGAGTCCCAATAAGACTATACAAAGTGTCTTGCAGATAAGCTACAATGGACTCGGTCAGTTTCATAAAGATGTGTTTCTTGACGTAGCTTGTTTCTTTAGATCAGGGGATGAGAATTACGTGAGGTGTTTGGTGGAGTCATGTGACACTGATCTTGTTGATGCTGCGAGTGAGATAAAGGATCTTGCCAGTAAATTTTTGATAAACATTTCTGGCGGACGAGTGGAGATGCATGATTTACTGTATACATTTGGCAAGGAACTTGGTTCACAAGGTTCGCGGAGGCTGTGGAACCATAAAGGCGTTGTTGGTGCGTTGAAGAAAAGAAAAGGAGCAGGCAGTGTGCGGGGCATTTTTCTTGACATGTCTGAACTGAAGGAGAAGCTTCCTCTGGACAGATGTACTTTCACTGAGATGCGTAATCTTAGGTACCTCAAATTCTATAGTTCTCGTTGTCATAGAGAATGCGAAGCTGACTGCAAACTAAACTTCCCTGAGGGACTTGATTTTCCCTTGGATGAAGTAAGATATCTCTTTTGGCTGAAGTTCCCTTTGAAGAAACTTCCGAAAGACTTCAACCCCAAGAATCTAACCGACCTTAACATGTCTTTCAGCGAGATTGAAGAGCTCTGGGAGGGTGTTAAGGATACACCGAAGTTAAAGTGGGTTGATCTTAGCCACTCAAGCAAGTTATGCAATCTGACAGGGTTGCTAAATGCTGAAAGCCTCCAGAGATTGAATCTCGAAGGGTGCACGAGTTTGGAGGAGTTGCCTCGTGAGATGGAACGTATGAAATGTCTTGTTTTCCTCAACATGAGAGGATGCACGAGTCTCCGGGTTCTTCCGCATATGAATCTGATCTCTATGAAAACTCTCATCCTCACCAACTGCTCAAGCCTTCAGACATTCCGGGTGGTTTCGGATAATCTAGAGACCCTACACTTGGATGGATCTGCAATTGGTCAACTTCCTACAAACATGTGGAAGCTCCAGCGACTGATTGTATTGAACTTGAAAGACTGCAAAATGTTGGTAGAACTTCCAGAATGCCTTGGGAAGCTGAAAGCTCTGCAAGAACTGGTGCTATCTGGTTGTTCAAAGCTCAAGACTTTTCCAATTCGCATTGAAAACATGAAATCTTTGCAGCTTTTATTGCTTGATGGGACATCAATTACAGACATGCCGAAGATATTGCAGTTGAATAGCTCAAAAGTGGAAGACTGGCCTGAACTAAGACGTGGTATGAACGGCATATCCTCATTGCAGCGTCTATGCTTAAGCGGGAATGATATAATCACCAACTTGCGAATCGACATCAGTCTACTATGTCATCTGAAACTGCTTGACCTGAAATTCTGCAAGAATCTCACTTCAATTCCACTGCTTCCACCAAATGTAGAGATCTTAGATGCACATGGCTGTGGCAAACTGAAGACAGTCGCAACGCCGATGGCCATTCTTAAGCATATGGAGAAGGTTCACTCTAAGTTCATTTTCACCAACTGCAACAGTCTTGAACAAGCTGCAAAGAATAGCATCACAACGTATGCTCAAAAGAAAAGCCAGCTAGATGCGCTTAGATGTTATAAAGAGGGACATGCTTCAGAAGCTTTATTCATTACTTCCTTTCCAGGGAGTGAAGTACCTTCATGGTTTGACCATCGCATGATTGGATCAACGTTAAAGCTGAAGTTTCCGCCACATTGGTGTGACAACAGACTTTCAACAATAGTTCTATGCGCTGTTGTTGCATTCCAAAATGAGATCAACAGTTTCTCAATAGAATGCACTTGTGAGTTCAAAAACGAACTTGGAACATGTACACGTTTCAGCAGCATTCTTGGTGGAGGTTGGATTGAACCACGCAAGATTGATTCAGACCATGTGTTTATCGGTTACACCAGTTCCTCCCACATAACAAATCATGTAGAAGGTTCGCCAGAACATCAAAAATGTGTTCCTACCGAGGCGTCAATAAAATTCAAAGTGATAGATGGAGCAGGTGAGATTGTGAATTGTGGTTTAAGTTTGGTGTACGAGGAACCAAACCATGTTGTTATCGAAGGAGATTGTAGTGGAACTTCCTCGGGAAGAGGTTTATCAGTTGTGGAGAGTACAATGAGCTTTGCTACTCGGTTCCTCTCTGTTATTTTGAGGTTGCTGCGAGCCATAGGTTTGCACCTCTTGGGAGCTAACTTTATCAGCTGGATGCTTAAGCGTCTCCCCCACCAAAGCATTGTCAGAAGCAAAGATCGGGAGATTAAGGGAGGTTACCTTGAAGGTAGAGAAAGGGGAGGATCAGGAACAGAGAAGGAAGCGCCATGGCTTGCAGACGAAAAGGATGATGATGAGGAGGAGAAGCATTTGCTCATGGTCTCTAACATCGCCATCGTCTTCGCTGTCTCCTATCTCCTATCACAACTCGCCACGTGA
Protein sequences
Name | Description | Sequence |
---|---|---|
disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MLTVASSSSSVQSPPQNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGFTLGETSDEGDYINQIVGEVVKVLSSDLERQIPIDNHPCSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVHSKFIFTNCNSLEQAAKNSITTYAQKKSQLDALRCYKEGHASEALFITSFPGSEVPSWFDHRMIGSTLKLKFPPHWCDNRLSTIVLCAVVAFQNEINSFSIECTCEFKNELGTCTRFSSILGGGWIEPRKIDSDHVFIGYTSSSHITNHVEGSPEHQKCVPTEASIKFKVIDGAGEIVNCGLSLVYEEPNHVVIEGDCSGTSSGRGLSVVESTMSFATRFLSVILRLLRAIGLHLLGANFISWMLKRLPHQSIVRSKDREIKGGYLEGRERGGSGTEKEAPWLADEKDDDEEEKHLLMVSNIAIVFAVSYLLSQLAT |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52200 IPR000157
|
5-155 | TIR Toll-Interleukin receptor
|
ASSSSSVQSPPQNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGF |
ProfileScan: PS50104 IPR000157
|
15-152 | TIR Toll-Interleukin receptor
|
PQNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQK |
HMMSmart: SM00255 IPR000157
|
16-152 | TIR Toll-Interleukin receptor
|
QNQVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQK |
Gene3D: G3DSA:3.40.50.10140 | 18-147 | G3DSA:3.40.50.10140 | QVFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQ |
HMMPfam: PF01582 IPR000157
|
19-147 | TIR Toll-Interleukin receptor
|
VFLNFRGKQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQ |
HMMPanther: PTHR23155 | 26-949 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | KQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGFTLGETSDEGDYINQIVGEVVKVLSSDLERQIPIDNHPCSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVHSKFIFTNCNSLEQAAKNSITTYAQ |
HMMPanther: PTHR23155:SF66 | 26-949 | PTHR23155:SF66,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) | KQLRYGFVSHLEKALRRDGINVFVDKNETKGKDLSSLFSRIEESRIALAIFSSMYTESKWCLNELEKIKECVDLGKLVVIPIFYKVDTDDVKNLNGVFGDKFWELAKTCNGEKFEKWRQALQNIPQKLGFTLGETSDEGDYINQIVGEVVKVLSSDLERQIPIDNHPCSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVHSKFIFTNCNSLEQAAKNSITTYAQ |
superfamily: SSF52540 | 193-438 | SSF52540 | CSGAEKTPEAAPDLPPPLFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTI |
Gene3D: G3DSA:3.40.50.300 | 210-357 | G3DSA:3.40.50.300 | LFGIENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVD |
HMMPfam: PF00931 IPR002182
|
214-466 | NB-ARC,NBS NB-ARC
|
ENRLTQLEMKLDFECENTITIGVVGMPGIGKTTLTKMLYEKWRGEFLRCVFLHDVRKLWKDCKMNRDIFMRELLKDDDVKQEVSDLSPESLKALLLSKKSLVVLDNVSDKSQIETLLGECDWIKRGSRIFITTSDKSVIKGVVDDTYEVLRLSGRDSFQYFSYFAFSGKLCPPEDNFLNLSRLFVDYAKGNPLALKILGVELSEKDETHWEETLRDLAQSPNKTIQSVLQISYNGLGQFHKDVFLDVACFFRS |
FPrintScan: PR00364 IPR000767
|
233-248 | DISEASERSIST Disease resistance protein
|
TIGVVGMPGIGKTTLT |
FPrintScan: PR00364 IPR000767
|
307-321 | DISEASERSIST Disease resistance protein
|
LLLSKKSLVVLDNVS |
FPrintScan: PR00364 IPR000767
|
401-415 | DISEASERSIST Disease resistance protein
|
AKGNPLALKILGVEL |
superfamily: SSF46785 | 436-538 | SSF46785 | KTIQSVLQISYNGLGQFHKDVFLDVACFFRSGDENYVRCLVESCDTDLVDAASEIKDLASKFLINISGGRVEMHDLLYTFGKELGSQGSRRLWNHKGVVGALK |
superfamily: SSF52058 | 507-906 | SSF52058,LRR | EMHDLLYTFGKELGSQGSRRLWNHKGVVGALKKRKGAGSVRGIFLDMSELKEKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNCSSLQTFRVVSDNLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCG |
Gene3D: G3DSA:3.80.10.10 | 558-728 | G3DSA:3.80.10.10 | EKLPLDRCTFTEMRNLRYLKFYSSRCHRECEADCKLNFPEGLDFPLDEVRYLFWLKFPLKKLPKDFNPKNLTDLNMSFSEIEELWEGVKDTPKLKWVDLSHSSKLCNLTGLLNAESLQRLNLEGCTSLEELPREMERMKCLVFLNMRGCTSLRVLPHMNLISMKTLILTNC |
HMMPfam: PF07725 IPR011713
|
627-646 | LRR_3 Leucine-rich repeat 3
|
NLTDLNMSFSEIEELWEGVK |
FPrintScan: PR00364 IPR000767
|
715-731 | DISEASERSIST Disease resistance protein
|
MNLISMKTLILTNCSSL |
Gene3D: G3DSA:3.80.10.10 | 740-925 | G3DSA:3.80.10.10 | NLETLHLDGSAIGQLPTNMWKLQRLIVLNLKDCKMLVELPECLGKLKALQELVLSGCSKLKTFPIRIENMKSLQLLLLDGTSITDMPKILQLNSSKVEDWPELRRGMNGISSLQRLCLSGNDIITNLRIDISLLCHLKLLDLKFCKNLTSIPLLPPNVEILDAHGCGKLKTVATPMAILKHMEKVH |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
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