PRGDB00061492 (disease resistance protein)

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disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 227438276 (FJ842847)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Brassica rapa subsp. pekinensis

Comment?

Brassica rapa subsp. pekinensis isolate BrTN3 disease resistance protein gene, complete cds.

DNA Sequence

ATGAACAGAATATTGAAAAAACTATCGTGCTTTAAGACAAAAGTTAAATCGTTACGACTATTCGAATCCAACTCATCACTGTCTTCTTCATCTTCTTCCTCTTTCACTCCTCAGAAATACAACGTCTTTCTAAACTTCAGAGGCGCAGATACTCGCAAGAACTTCGTCAGTTTTCTCTACAGAGACTTAGTGGCGAAAGAGATTCGAACTTTCAAAGACGACAAGGAGTTGGAGAGGGGCCGGTCAGAGATCGCCGTCGTGGTGGTTTCTAAGACTTACTCAGCTTCCTACTGGTGTCTTGAAGAGCTTGTGAAGATTCTGAAACTCGAGAAACAGGGTTTGATCAAAGTGCTGCCTATTTTCTACGACGTCGATCCTTGTGACGTGAGAAGACAAACCGGAGCAGTCAAGAAACATTTCGAGAAACACAAGAAGAGACTAAGCAGAGAGAAGGTCAAATCTTGGAGGGATGCGTTGAATTATTTGGCTGAGCTCTCTGGTGAATGTTCACAGAACTGGGAAGATGACTCGAAGCTGGTCGTTGAAATCACAGAAAGAATATCAAAGATGTTGTTCTCCGTAAAACCAAGAAATGGTAATAACCTAATTGGTATCGATGAACACATGAATGAATTGTATCCACGGTTAGATTTAAGCTCAAAGGAAGGTGTGCGAGTCATTGGGATATGGGGAAGAGGAAGCATGGGAAGATCAGCACTTGCAAGACACGTTTACGAGAGCATCTCTCATAACTTTGAAGCTCACTGTTTCCTCGAAGACGTGAGAAAGATCTCACAACATTGCCGCAAATCTCATCTACAAGAAGAGCTTCTTTCCATGATGCAAGGGGAAGGGTTGAACACAAAGAGCTCTCATAGGTGTCTTAAAGCGATCAGAGCAAGGCTCAGGAACAAGAAGGTTCTACTTGTGGCTAACGACGTGGACAAGATCGAACAGTTAGAATCCCTTGGTGAGGAGTTTAGCTGGTTTGGTCATGGCAGCAGAGTCGTCATAACCACACAAGATAGGCAATTGCTTAGTTCATGGGGTGTGAAGATTGTCTATGAAGTTGAGTTCTTGAAATGCTGCGAAGTTCGAAAGCTCTTTAGGTCAGAAGCATTCAAACAGAGAGAGGTGGATCCTGTTGGTTTGGAACAGTCTACATATCATCCACACATGAATTTTCTTGGTATTAATTTCATTTTGAAATGTTTGGTGGCTTTGTTATGTGACACAGGTCAGCTTAAGGAAAGACTGAGTGCATTAATATATACTCGCTAG


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Brassica rapa subsp. pekinensis].

MNRILKKLSCFKTKVKSLRLFESNSSLSSSSSSSFTPQKYNVFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALNYLAELSGECSQNWEDDSKLVVEITERISKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSMMQGEGLNTKSSHRCLKAIRARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVITTQDRQLLSSWGVKIVYEVEFLKCCEVRKLFRSEAFKQREVDPVGLEQSTYHPHMNFLGINFILKCLVALLCDTGQLKERLSALIYTR

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
28-168 TIR
Toll-Interleukin receptor

SSSSSSSFTPQKYNVFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALNYLAELSGE

Gene3D: G3DSA:3.40.50.10140
38-163 G3DSA:3.40.50.10140

QKYNVFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALNYLA

ProfileScan: PS50104
IPR000157
38-165 TIR
Toll-Interleukin receptor

QKYNVFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALNYLAEL

HMMSmart: SM00255
IPR000157
39-165 TIR
Toll-Interleukin receptor

KYNVFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALNYLAEL

HMMPanther: PTHR23155:SF344
39-338 PTHR23155:SF344

KYNVFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALNYLAELSGECSQNWEDDSKLVVEITERISKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSMMQGEGLNTKSSHRCLKAIRARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVI

HMMPanther: PTHR23155
39-338 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KYNVFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALNYLAELSGECSQNWEDDSKLVVEITERISKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSMMQGEGLNTKSSHRCLKAIRARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVI

HMMPfam: PF01582
IPR000157
42-160 TIR
Toll-Interleukin receptor

VFLNFRGADTRKNFVSFLYRDLVAKEIRTFKDDKELERGRSEIAVVVVSKTYSASYWCLEELVKILKLEKQGLIKVLPIFYDVDPCDVRRQTGAVKKHFEKHKKRLSREKVKSWRDALN

superfamily: SSF52540
184-375 SSF52540

TERISKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSMMQGEGLNTKSSHRCLKAIRARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVITTQDRQLLSSWGVKIVYEVEFLKCCEVRKLFRSEAFK

Gene3D: G3DSA:3.40.50.300
200-340 G3DSA:3.40.50.300

NNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSMMQGEGLNTKSSHRCLKAIRARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVITT

HMMPfam: PF00931
IPR002182
206-379 NB-ARC,NBS
NB-ARC

DEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSMMQGEGLNTKSSHRCLKAIRARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVITTQDRQLLSSWGVKIVYEVEFLKCCEVRKLFRSEAFKQREV

FPrintScan: PR00364
IPR000767
226-241 DISEASERSIST
Disease resistance protein

VIGIWGRGSMGRSALA

FPrintScan: PR00364
IPR000767
301-315 DISEASERSIST
Disease resistance protein

RLRNKKVLLVANDVD


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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