PRGDB00061494 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438272 (FJ842845) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGAGATTCTCTTCGAGAAATGTTTGACAACCAGCGATCTCAGTAACCTTGACACTAATGTCGTCACCGCCAACGAGGACGTTGGTAAGTACTTTCGCTTAGTCACCGTCGTCGTCAGAGGTACTGAACAGATCCTTAGAATAGAGGATGAGGAAGGCAAGCCATGGCAGTTCGGGTTCACAGACCTCAACGTTAGCCAACGCTACGTCTTGACCAAAGGTTGGAGCAACTACGTTAAGGAGAAGCAGCTTGGTGTCGGAGACTTTGTTTTCTTGCAGCGGCTTTTTACGGACAGCAGCAGGCTCTTCATTGGCTTTAGAAGGCGCGAAGCTGTTCTCGGACAGTGTCAGGATTTAACATCATTGGCCACAGCCTCTGAGAAACTCAAGGAAGTTGAAACTCCTCTCCAGCTAAGAAGTCCTAGGCATAGCGTTACAGGGTTCGACGGTATTTTACTGGTTTCTGGTGGTGACAACCAGGACTCCGAGGAGAGATACTTCATCAGCTATATCTCCAAAGAGCTGTGTCTCCGTGGCTTTACCCCTTTGATATATGATCTTACAAAGAGCACATTGGCTGGTGTGGAGATGCTGCACAGATCACGGGTGGGTATTATCATTTTCTCCAACAACTATGCTTCTTCTAGACAGTGTCTGGATAAATTTGTGGCAATCTTGGACTATTCGAAAGCAAACAACTTTGTGCTTCTTCCGGTATTTTTTAAAGTGAAGGTGTCAGACATTAGGGGTCAAAGTGGCTCCTTTCGAAGAGCATTCTCACGACTTGAGCATTCAGTTCTGTCATCCCAAGTTCCCACATTAACTGCCATCAACAAATATCAGTATATGAAAGGGGAAGATGTTATACTTGCCAAGAGTATTGTTAGTGATGTCTGTTTGCTGCTCAATTCTGAAACTAACATGAAACTAAGAGGAAGGCTTCAAATACAAAGTATATTGTCTTTACTAAATTGTTCTCATTTCTCAGCCCCACATATTGTTGGACTTTGGGGTATGGCTGGCATAGGGAAAACTGCCATCACTAGAGAAATTTTCAGAAGACAAGCTGAGAGATATGACGTCTGCTACTTTCTGCCAGACTTCCATATAGTGTGTCAAACGAGAGGGCTGAGTCATTTGCGTGATGAATTCTTCTCGAGAATCTCTGGGGAAGAAAAGGTTACTATAGACGCATGTGATACTAAACTAGGTTTCATAAGGGATAGGTTCCTTAGTAAAAAGGTTCTCGTTGTTCTTGATGGCGTGAGTAGTGCTAGAGATGCAGAATTTTTGGTTGGAGGGTTTGGCTGGTTTTCTGGTGGACATACACTCATCTTAACATCTAGAAATAGGCAAGTTCTGGTACAGTGTAACGCTAAAGAGATTTACGAAATCCAGAAACTATCCGAGCGTGAGTCTCTTCAGCTTTGCAGCCAGTTTGCCACTGAACAAAATTGGAAGGGAAGCACGTCATTGGTCTCGGAGCTGGTAAACTACGCTAGTGGGATACCATTGGCTCTGTGTGCCTTAGGATCGTCCTTACAAAATCAATGTATTAAAGATGAGAAGCAACATCTGAAAAGATTGCGTCAAAATCCTTTAGTTGAGATTCAGGATGCATTCAAAAGAAGTTTTAATGTACTAGATGGCAACGAGAAGAATACATTTTTGGACCTTGCATGTTTTTTCCGAGGGGAGAATAAAGATTATGTAGTGAACATCCTAGATGGTTGCGGTTTTCTTACAGAGTTAGGAATCTATGGTCTCATTGATGAGTCTCTCATCAGCATTGTAGATAACAAAATAGAAATGCTCAACATTTTCCAAGACACGGGTCGATTTGTTGTTTGTCAAGAGAGTAGTGAGACAGGGAAGCGTAGCAGATTGTGGGATCCTTCTGACATTGTTGATGTGCTGACCAACAACTCAGGAACAGAAGCAATTGAAGGCATATTTCTCGATTCAACTGGCTTGACAGTTGAGCTGAGTCCTACTGTTTTTGAGAAGATATATAGACTTAGATTCCTCAAGCTCTACAGTCCAACTTCTAAAAATCATTGCAACGTATCTCTACCTCAAGGCCTGTACTCTTTGCCTGATGAGCTACGTCTACTCCACTGGGAACGATGTCCTTTAGAATCCTTACCTCGGAAATTCAATCCTAAAAATATTGTAGAACTGAACATGCCCTATAGCAACATGACAAAACTATGGAAGGGAACAAAGAATCTTGAGAACCTAAAGAGGATCATTTTGAGTCACTCACGACGGTTGATTAAATTCCCAAGGCTTTCAAAGGCCAGGAACCTTGAGCATATTGATCTTGAAGGATGTACGAGTCTGGTTAAAGTTAACTCATCTATTCTTCATCACCACAAGCTTATTTTCTTGAGTCTTAAAGACTGTTCACATTTGCAAACAATGCCTACCACGGTTCATCTAGAAGCTCTTGAAGTTCTCAATCTTTCCGGCTGCTTAGAACTTGAGGACTTTCCGGATTTCTCACCGAACCTGAAAGAGCTATATCTAGCTGGGACTGCCATAAGAGAAATGCCATCATCAATCGGTGGTCTCAGTAAACTTGTTACACTAGATCTGGAGAACTGTGACAGACTTCAACACCTGCCACCAGAGATAAGAAACTTGAAAGTTGTGGTTACCCTTAGCGCCAAACGTCCTGCTGCTTCCATGAATCTATCTAGCGTGGAGGATAAAGCACCACCATACACGAGATGTCGATTGAAGAGAGTTATTGAATCTGTTATTCTGAGCTTAAGAAAAAAGAAGCGAGAAAATACGGTCCCTAGGGCTGACATGAGGGTTAACGAGAAGACAATGGAGGAAAAAGAAGTAAGAGAGAAATCGGTTGATGGTGACAACGATGACGATTTCGATCCGTTTGCTACTTTGTGTGATGACAGGAAGAAGAGTATTCTTAAAATTCAGGAGAAACTTGAAGATCCTGATCTGTCTGAAGAAGCTTTGGTTGAGTTGCTTCAGAAACTGGAATATGTGGACATAACACTGAAAGATCTTCAGGGAAGTAATATCGGGCGGCTTGTGAATTTAGTGCAGAGGCGTCGAACGGGAAATGCTAAGAGATTAGCTCAACAGCTTATCAAGAAATGGAAGGAAACAGTAGAGAAAACTCTCACAGATAAACAGCCTAGTGATCTCAAACCTCCGAATTTAATAGGTAAAAGAAAAGAGTGCAACTCTGAATCTCAGAACAAGCATCGTTCTCATCCATTTCATCATCCAAAAGACACGGAAACCTCTGTGCCGGAGGGTTCCTTGAACCTCGAAGGCCTCCCCTTACGCCCGGGAAAACCTGTGTGTGCCTCGTATTTTCACACTGGAAGCTGCATCTCCGGTCCTACTTGCATTTTTGATCACCCATCGTTGATACCAGTTCACAAGACCACATCTCTGTACTCGAATCAGCTGGGATTGTCTTCTTCAATTGGAGATTCATCAAGTGACCTTGTGGGACCAGCAACTAAGCAACGAAGAATCCATAAGAACACATCTTCCATGGCTTCTGAGACACTGCACTCGAGTCCACTAGGATTTGCTTCTTCAATTGGAGATTCATCAAGTGAGCTTGTGGAAGCATCAACTAAGAAACCTCCAGTACACAAGAACACGTCTTCTCTGGTTCCACAGATGCCGCATTTCAATCCGCTAGGATTTTCTTATTCCATTGGAGATTCGTCAAGTGAGCTTGTGGAAGCATCAACTGTGTCTGAGATAACACACACAAACGTTGGTAGAAACCCCTCTGATTCATGGGATGATGAAGAAGACTCTCAGTTTTGGTTGCATCTATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MEILFEKCLTTSDLSNLDTNVVTANEDVGKYFRLVTVVVRGTEQILRIEDEEGKPWQFGFTDLNVSQRYVLTKGWSNYVKEKQLGVGDFVFLQRLFTDSSRLFIGFRRREAVLGQCQDLTSLATASEKLKEVETPLQLRSPRHSVTGFDGILLVSGGDNQDSEERYFISYISKELCLRGFTPLIYDLTKSTLAGVEMLHRSRVGIIIFSNNYASSRQCLDKFVAILDYSKANNFVLLPVFFKVKVSDIRGQSGSFRRAFSRLEHSVLSSQVPTLTAINKYQYMKGEDVILAKSIVSDVCLLLNSETNMKLRGRLQIQSILSLLNCSHFSAPHIVGLWGMAGIGKTAITREIFRRQAERYDVCYFLPDFHIVCQTRGLSHLRDEFFSRISGEEKVTIDACDTKLGFIRDRFLSKKVLVVLDGVSSARDAEFLVGGFGWFSGGHTLILTSRNRQVLVQCNAKEIYEIQKLSERESLQLCSQFATEQNWKGSTSLVSELVNYASGIPLALCALGSSLQNQCIKDEKQHLKRLRQNPLVEIQDAFKRSFNVLDGNEKNTFLDLACFFRGENKDYVVNILDGCGFLTELGIYGLIDESLISIVDNKIEMLNIFQDTGRFVVCQESSETGKRSRLWDPSDIVDVLTNNSGTEAIEGIFLDSTGLTVELSPTVFEKIYRLRFLKLYSPTSKNHCNVSLPQGLYSLPDELRLLHWERCPLESLPRKFNPKNIVELNMPYSNMTKLWKGTKNLENLKRIILSHSRRLIKFPRLSKARNLEHIDLEGCTSLVKVNSSILHHHKLIFLSLKDCSHLQTMPTTVHLEALEVLNLSGCLELEDFPDFSPNLKELYLAGTAIREMPSSIGGLSKLVTLDLENCDRLQHLPPEIRNLKVVVTLSAKRPAASMNLSSVEDKAPPYTRCRLKRVIESVILSLRKKKRENTVPRADMRVNEKTMEEKEVREKSVDGDNDDDFDPFATLCDDRKKSILKIQEKLEDPDLSEEALVELLQKLEYVDITLKDLQGSNIGRLVNLVQRRRTGNAKRLAQQLIKKWKETVEKTLTDKQPSDLKPPNLIGKRKECNSESQNKHRSHPFHHPKDTETSVPEGSLNLEGLPLRPGKPVCASYFHTGSCISGPTCIFDHPSLIPVHKTTSLYSNQLGLSSSIGDSSSDLVGPATKQRRIHKNTSSMASETLHSSPLGFASSIGDSSSELVEASTKKPPVHKNTSSLVPQMPHFNPLGFSYSIGDSSSELVEASTVSEITHTNVGRNPSDSWDDEEDSQFWLHL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF101936 IPR015300
|
4-109 | Restrict_endonuc_II_EcoRII_N Restriction endonuclease, type II, EcoRII, N-termi
|
LFEKCLTTSDLSNLDTNVVTANEDVGKYFRLVTVVVRGTEQILRIEDEEGKPWQFGFTDLNVSQRYVLTKGWSNYVKEKQLGVGDFVFLQRLFTDSSRLFIGFRRR |
| Gene3D: G3DSA:2.40.330.10 | 4-109 | G3DSA:2.40.330.10 | LFEKCLTTSDLSNLDTNVVTANEDVGKYFRLVTVVVRGTEQILRIEDEEGKPWQFGFTDLNVSQRYVLTKGWSNYVKEKQLGVGDFVFLQRLFTDSSRLFIGFRRR |
| HMMPfam: PF02362 IPR003340
|
5-109 | B3 Transcriptional factor B3
|
FEKCLTTSDLSNLDTNVVTANEDVGKYFRLVTVVVRGTEQILRIEDEEGKPWQFGFTDLNVSQRYVLTKGWSNYVKEKQLGVGDFVFLQRLFTDSSRLFIGFRRR |
| ProfileScan: PS50863 IPR003340
|
46-110 | B3 Transcriptional factor B3
|
LRIEDEEGKPWQFGFTDLNVSQRYVLTKGWSNYVKEKQLGVGDFVFLQRLFTDSSRLFIGFRRRE |
| HMMPanther: PTHR11017 | 159-882 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | NQDSEERYFISYISKELCLRGFTPLIYDLTKSTLAGVEMLHRSRVGIIIFSNNYASSRQCLDKFVAILDYSKANNFVLLPVFFKVKVSDIRGQSGSFRRAFSRLEHSVLSSQVPTLTAINKYQYMKGEDVILAKSIVSDVCLLLNSETNMKLRGRLQIQSILSLLNCSHFSAPHIVGLWGMAGIGKTAITREIFRRQAERYDVCYFLPDFHIVCQTRGLSHLRDEFFSRISGEEKVTIDACDTKLGFIRDRFLSKKVLVVLDGVSSARDAEFLVGGFGWFSGGHTLILTSRNRQVLVQCNAKEIYEIQKLSERESLQLCSQFATEQNWKGSTSLVSELVNYASGIPLALCALGSSLQNQCIKDEKQHLKRLRQNPLVEIQDAFKRSFNVLDGNEKNTFLDLACFFRGENKDYVVNILDGCGFLTELGIYGLIDESLISIVDNKIEMLNIFQDTGRFVVCQESSETGKRSRLWDPSDIVDVLTNNSGTEAIEGIFLDSTGLTVELSPTVFEKIYRLRFLKLYSPTSKNHCNVSLPQGLYSLPDELRLLHWERCPLESLPRKFNPKNIVELNMPYSNMTKLWKGTKNLENLKRIILSHSRRLIKFPRLSKARNLEHIDLEGCTSLVKVNSSILHHHKLIFLSLKDCSHLQTMPTTVHLEALEVLNLSGCLELEDFPDFSPNLKELYLAGTAIREMPSSIGGLSKLVTLDLENCDRLQHLPPEIRNL |
| HMMPanther: PTHR11017:SF20 | 159-882 | PTHR11017:SF20,SUBFAMILY NOT NAMED | NQDSEERYFISYISKELCLRGFTPLIYDLTKSTLAGVEMLHRSRVGIIIFSNNYASSRQCLDKFVAILDYSKANNFVLLPVFFKVKVSDIRGQSGSFRRAFSRLEHSVLSSQVPTLTAINKYQYMKGEDVILAKSIVSDVCLLLNSETNMKLRGRLQIQSILSLLNCSHFSAPHIVGLWGMAGIGKTAITREIFRRQAERYDVCYFLPDFHIVCQTRGLSHLRDEFFSRISGEEKVTIDACDTKLGFIRDRFLSKKVLVVLDGVSSARDAEFLVGGFGWFSGGHTLILTSRNRQVLVQCNAKEIYEIQKLSERESLQLCSQFATEQNWKGSTSLVSELVNYASGIPLALCALGSSLQNQCIKDEKQHLKRLRQNPLVEIQDAFKRSFNVLDGNEKNTFLDLACFFRGENKDYVVNILDGCGFLTELGIYGLIDESLISIVDNKIEMLNIFQDTGRFVVCQESSETGKRSRLWDPSDIVDVLTNNSGTEAIEGIFLDSTGLTVELSPTVFEKIYRLRFLKLYSPTSKNHCNVSLPQGLYSLPDELRLLHWERCPLESLPRKFNPKNIVELNMPYSNMTKLWKGTKNLENLKRIILSHSRRLIKFPRLSKARNLEHIDLEGCTSLVKVNSSILHHHKLIFLSLKDCSHLQTMPTTVHLEALEVLNLSGCLELEDFPDFSPNLKELYLAGTAIREMPSSIGGLSKLVTLDLENCDRLQHLPPEIRNL |
| HMMPfam: PF01582 IPR000157
|
163-262 | TIR Toll-Interleukin receptor
|
EERYFISYISKELCLRGFTPLIYDLTKSTLAGVEMLHRSRVGIIIFSNNYASSRQCLDKFVAILDYSKANNFVLLPVFFKVKVSDIRGQSGSFRRAFSRL |
| superfamily: SSF52200 IPR000157
|
195-262 | TIR Toll-Interleukin receptor
|
VEMLHRSRVGIIIFSNNYASSRQCLDKFVAILDYSKANNFVLLPVFFKVKVSDIRGQSGSFRRAFSRL |
| ProfileScan: PS50104 IPR000157
|
195-259 | TIR Toll-Interleukin receptor
|
VEMLHRSRVGIIIFSNNYASSRQCLDKFVAILDYSKANNFVLLPVFFKVKVSDIRGQSGSFRRAF |
| Gene3D: G3DSA:3.40.50.10140 | 196-262 | G3DSA:3.40.50.10140 | EMLHRSRVGIIIFSNNYASSRQCLDKFVAILDYSKANNFVLLPVFFKVKVSDIRGQSGSFRRAFSRL |
| HMMPfam: PF00931 IPR002182
|
325-582 | NB-ARC,NBS NB-ARC
|
CSHFSAPHIVGLWGMAGIGKTAITREIFRRQAERYDVCYFLPDFHIVCQTRGLSHLRDEFFSRISGEEKVTIDACDTKLGFIRDRFLSKKVLVVLDGVSSARDAEFLVGGFGWFSGGHTLILTSRNRQVLVQCNAKEIYEIQKLSERESLQLCSQFATEQNWKGSTSLVSELVNYASGIPLALCALGSSLQNQCIKDEKQHLKRLRQNPLVEIQDAFKRSFNVLDGNEKNTFLDLACFFRGENKDYVVNILDGCGFLT |
| superfamily: SSF52540 | 329-537 | SSF52540 | SAPHIVGLWGMAGIGKTAITREIFRRQAERYDVCYFLPDFHIVCQTRGLSHLRDEFFSRISGEEKVTIDACDTKLGFIRDRFLSKKVLVVLDGVSSARDAEFLVGGFGWFSGGHTLILTSRNRQVLVQCNAKEIYEIQKLSERESLQLCSQFATEQNWKGSTSLVSELVNYASGIPLALCALGSSLQNQCIKDEKQHLKRLRQNPLVEI |
| FPrintScan: PR00364 IPR000767
|
333-348 | DISEASERSIST Disease resistance protein
|
IVGLWGMAGIGKTAIT |
| FPrintScan: PR00364 IPR000767
|
409-423 | DISEASERSIST Disease resistance protein
|
RFLSKKVLVVLDGVS |
| FPrintScan: PR00364 IPR000767
|
500-514 | DISEASERSIST Disease resistance protein
|
ASGIPLALCALGSSL |
| superfamily: SSF46785 | 535-640 | SSF46785 | VEIQDAFKRSFNVLDGNEKNTFLDLACFFRGENKDYVVNILDGCGFLTELGIYGLIDESLISIVDNKIEMLNIFQDTGRFVVCQESSETGKRSRLWDPSDIVDVLT |
| superfamily: SSF52058 | 614-889 | SSF52058,LRR | FVVCQESSETGKRSRLWDPSDIVDVLTNNSGTEAIEGIFLDSTGLTVELSPTVFEKIYRLRFLKLYSPTSKNHCNVSLPQGLYSLPDELRLLHWERCPLESLPRKFNPKNIVELNMPYSNMTKLWKGTKNLENLKRIILSHSRRLIKFPRLSKARNLEHIDLEGCTSLVKVNSSILHHHKLIFLSLKDCSHLQTMPTTVHLEALEVLNLSGCLELEDFPDFSPNLKELYLAGTAIREMPSSIGGLSKLVTLDLENCDRLQHLPPEIRNLKVVVTLS |
| Gene3D: G3DSA:3.80.10.10 | 663-889 | G3DSA:3.80.10.10 | SPTVFEKIYRLRFLKLYSPTSKNHCNVSLPQGLYSLPDELRLLHWERCPLESLPRKFNPKNIVELNMPYSNMTKLWKGTKNLENLKRIILSHSRRLIKFPRLSKARNLEHIDLEGCTSLVKVNSSILHHHKLIFLSLKDCSHLQTMPTTVHLEALEVLNLSGCLELEDFPDFSPNLKELYLAGTAIREMPSSIGGLSKLVTLDLENCDRLQHLPPEIRNLKVVVTLS |
| HMMPfam: PF07725 IPR011713
|
723-742 | LRR_3 Leucine-rich repeat 3
|
NIVELNMPYSNMTKLWKGTK |
| HMMPfam: PF00560 IPR001611
|
817-835 | LRR_1 Leucine-rich repeat
|
LEVLNLSGCLELEDFPDFS |
| HMMPfam: PF12799 | 836-873 | LRR_4,Leucine Rich repeats (2 copies) | PNLKELYLAGTAIREMPSSIGGLSKLVTLDLENCDRLQ |
| FPrintScan: PR00364 IPR000767
|
856-872 | DISEASERSIST Disease resistance protein
|
GGLSKLVTLDLENCDRL |
| superfamily: SSF47676 IPR017923
|
974-1064 | TFIIS_conserved Transcription factor IIS, N-terminal
|
RKKSILKIQEKLEDPDLSEEALVELLQKLEYVDITLKDLQGSNIGRLVNLVQRRRTGNAKRLAQQLIKKWKETVEKTLTDKQPSDLKPPNL |
| Gene3D: G3DSA:1.20.930.10 IPR017923
|
975-1057 | TFIIS_N_fun-typ Transcription factor IIS, N-terminal
|
KKSILKIQEKLEDPDLSEEALVELLQKLEYVDITLKDLQGSNIGRLVNLVQRRRTGNAKRLAQQLIKKWKETVEKTLTDKQPS |
| ProfileScan: PS51319 IPR017923
|
976-1050 | TFIIS_N Transcription factor IIS, N-terminal
|
KSILKIQEKLEDPDLSEEALVELLQKLEYVDITLKDLQGSNIGRLVNLVQRRRTGNAKRLAQQLIKKWKETVEKT |
| HMMPfam: PF08711 IPR017923
|
997-1047 | Med26 Transcription factor IIS, N-terminal
|
ELLQKLEYVDITLKDLQGSNIGRLVNLVQRRRTGNAKRLAQQLIKKWKETV |
| ProfileScan: PS50103 IPR000571
|
1107-1135 | ZF_C3H1 Zinc finger, CCCH-type
|
RPGKPVCASYFHTGSCISGPTCIFDHPSL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
