PRGDB00061502 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438256 (FJ842837) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGAGTTGGAAAGAAAAGGAATCACTCCGTTCATTGATAATGAAATCAGAAGAGGAGAATCCATCGGTCCCGAACTCATTAGGGCCATCAGAGGATCTAAGATAGCAATTATCTTGATCTCTAGGAACTATGCCTCCTCAAAATGGTGTCTTGATGAACTGGTGGAGATTATGAAATGCAGAGAAGAGTTGGGTCAAACTGTAATGCCTGTTTTCTACGAAGTGGATCCTTCTAATGTGAAAAAGCTAACCGGAGATTTTGGGAAAGTCTTTAGAAAAACTTGTGCTGGTAAAACAAAGGAATGCATTAAGAGATGGAGACAAGCTTTTGCAAAAGTTGCTACAATCGCTGGCTATCATTCAAGCAACTGGGATAATGAAGCGGACATGATTAAGAAAATCACCACTGATATTTCGAACATGCTGAATAATTTCACACCATCAAATGATTTGGACGAGTTAATTGGGATGGAAGCTCAATTAGAAAAGATGAAACCATTATTGTGCCTAGGCTCAGATGAGGTGAGGATGATCGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATCGCTAGATTCGCATTCAACCAACTCTCCAACCGTTTTCAACTTAGTGTCTTTATGGATGATCTCAAACCAAACCCTACAAGACTGTGTTCCGATGACTACAGCTTAAAGTTGCAACTACATCAACGGTTTATGTCTCAAATAACAAACCATAAGGATATGGTGGTTTCGCATTTGGGAGTTGCCTCAAATAGGTTGAAGGACAAGAAAGTTCTTGTTGTTCTTGATGGCGTGGACCGGTCAGTACAACTAGATGCTGTAGCGAAAGAGGCTTGGTGGTTTGGTCCCGGGAGTCGGATTATAATCACAACACAAGACCGGAGAATTTTTAGAGCACATGGTGTTAACCACATTTACAAGGTGGATTTTCCAACAAGTGATGCGGCTCTCCAAATCTTTTGTACGTATTCTTTTGGTCAAAAGTCCCCTAAAGATGGTTTTGAGGAGCTTGCTCGGGAAGTTACACAACTTTCTGGTGAACTCCCTTTGGGGCTAAGGGTTATGGGTTCCTACTTTAAGGGAATGTCCAAGCAAGAGTGGATAAATGCGATACCAAGATTAAGGACTAGCCTTGATTCTGATATAGGAAGCATTTTGAAGTTCAGCTATGATGCTTTAGATGATGAAGATAAATATTTGTTTCTTTATATAGCCTGCTGCTACAAATCTGAATGGATTAACGAAGTGGAAGAGTATCTTGCAAAGAAGTTCGTGGAAGTGAGGCAAAGACTTAACGTCTTAGTTGACAAATCTCTCATATCTATCAGCCTCCTTGGAGTTATAGAGATGCATAGTTTGCTAAAAAAACTAGGTAGAGAAATTGTTTGTAAACAATCTCAGGAGCCTGGACAGCGCCAGTTTCTCTATGACGAAAGAGAGGTTTGTGAAGTACTGACTGGTGATGCAACAGGTAGTAAAAGTGTCATAGGCATAAATTTAGACTACAGCAGAGAGGGTAAAGAAATAGATATAAGTGAGAAAGCCTTTGAAGGAATGTCAAATCTCCAATTTTTAAAAGTTTCTTGTTCTCACTTTACCATGAAATCAACTCGAGGTCTGAGCTATCTACCTCATAAACTTCGATTACTAAAGTGGAGTCATTGTCCAATGACATGTTTTCCTTGCAATGTAAACTTTGAGTTCCTTGTTGAACTAAGCATGTCTAACAGCAAGCTTGAGAAGTTGTGGGAAGTAACTAAACCGCTACGGAGTCTCAAGAGGATGGATATGAGGAATTCTAAGGAGCTCCCTGATCTCTCAACTGCCACTAACCTTAAGAGATTGAATCTAAGTAATTGCTCGAGTCTAATCAAACTCCCTTCCTTGCCTGGAAATAGCATGAAGGAATTATATATCAAGGGATGCTCAAGTCTTGTGGAGTTTCCCTCCTTTATTGGGAATGCCGTTAATCTCGAAACATTGGATCTTAGTAGTTTGCCAAATCTGTTGGAGCTCCCTTCCTTTGTTGAGAATGCCACCAACTTAAAGAAGTTGGACCTTAGATTTTGTTCAAACCTGGTGGAACTTCCTTTTTCCATTGGGAACCTTCAGAAGCTGTGGTGGCTGGAATTACAAGGGTGCAGTAAGCTAGAGGTGCTTCCCACCAACATCAACTTGAAATCTTTGTATTTCCTTAATCTCAGTGATTGCTCCATGTTGAAAAGTTTTCCCCAGATCTCCACAAACCTTGAAAAGCTCGACCTCAGAGGAACTGCAATAGAACAAGTGCCTCCTTCGATCAGGTCAAGGCCTTGTTCTGATATATTGAAGATGTCATACTTCGAAAACCTCAAGGAATCCCCTCATGCTCTTGAAAGAATCACAGAACTGTGGTTGACCGACACAGAGATACAAGAGCTTCCTCCGTGGGTCAAGAAAATCTCTCGTCTGAGTCAACTCGTGGTCAAGGGATGCCGAAAGCTGGTATCCGTCCCACCGCTTTCAGATTCCATCCGTTACATTGATGCAAGTGACTGCGAGTCCCTGGAGATGATAGAGTGCTCCTTTCCCAATCAATTCGTTTGGCTCAAATTTGCCAACTGCTTCAAACTGAATCAAGAGGCGAGAAACCTCATCATCCAGAAAAGTGAATTTGCAGTCTTGCCAGGTGGACAAGTGCCTGCATATTTCACTCACCGAGCTATTGGCGGAGGTCCATTGACAATCAAGTTGAATGATAACCCTCTTCCCAAATCCATGAGATTTAAAGCTTGCATCTTGCTGCTTAATAAAGGTGACCATGACACTTGTTATAATGAGGAATTGACGCAAGTGGAAGTTAAGTTTAAATATGGCAGTAAAACTCTGTATCTGCCTTTAGCAGGGCATCTGTACACATTCCGATTCGGAGCAAATGTTAGTTCCAACGAGCTTCTCTTTGAGTTCAAGCTGAAAAACGATGACGTTTGGAAGATTGGAGAATGCGGGTTAGTCCAAGACTTGGAGGTCCCTTTCATGTTGATGAACACGATGAGAGCTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MELERKGITPFIDNEIRRGESIGPELIRAIRGSKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAFAKVATIAGYHSSNWDNEADMIKKITTDISNMLNNFTPSNDLDELIGMEAQLEKMKPLLCLGSDEVRMIGIWGPPGIGKTTIARFAFNQLSNRFQLSVFMDDLKPNPTRLCSDDYSLKLQLHQRFMSQITNHKDMVVSHLGVASNRLKDKKVLVVLDGVDRSVQLDAVAKEAWWFGPGSRIIITTQDRRIFRAHGVNHIYKVDFPTSDAALQIFCTYSFGQKSPKDGFEELAREVTQLSGELPLGLRVMGSYFKGMSKQEWINAIPRLRTSLDSDIGSILKFSYDALDDEDKYLFLYIACCYKSEWINEVEEYLAKKFVEVRQRLNVLVDKSLISISLLGVIEMHSLLKKLGREIVCKQSQEPGQRQFLYDEREVCEVLTGDATGSKSVIGINLDYSREGKEIDISEKAFEGMSNLQFLKVSCSHFTMKSTRGLSYLPHKLRLLKWSHCPMTCFPCNVNFEFLVELSMSNSKLEKLWEVTKPLRSLKRMDMRNSKELPDLSTATNLKRLNLSNCSSLIKLPSLPGNSMKELYIKGCSSLVEFPSFIGNAVNLETLDLSSLPNLLELPSFVENATNLKKLDLRFCSNLVELPFSIGNLQKLWWLELQGCSKLEVLPTNINLKSLYFLNLSDCSMLKSFPQISTNLEKLDLRGTAIEQVPPSIRSRPCSDILKMSYFENLKESPHALERITELWLTDTEIQELPPWVKKISRLSQLVVKGCRKLVSVPPLSDSIRYIDASDCESLEMIECSFPNQFVWLKFANCFKLNQEARNLIIQKSEFAVLPGGQVPAYFTHRAIGGGPLTIKLNDNPLPKSMRFKACILLLNKGDHDTCYNEELTQVEVKFKYGSKTLYLPLAGHLYTFRFGANVSSNELLFEFKLKNDDVWKIGECGLVQDLEVPFMLMNTMRA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| ProfileScan: PS50104 IPR000157
|
1-116 | TIR Toll-Interleukin receptor
|
MELERKGITPFIDNEIRRGESIGPELIRAIRGSKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAFAKVATI |
| HMMSmart: SM00255 IPR000157
|
1-116 | TIR Toll-Interleukin receptor
|
MELERKGITPFIDNEIRRGESIGPELIRAIRGSKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAFAKVATI |
| Gene3D: G3DSA:3.40.50.10140 | 2-114 | G3DSA:3.40.50.10140 | ELERKGITPFIDNEIRRGESIGPELIRAIRGSKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAFAKVA |
| HMMPfam: PF01582 IPR000157
|
2-110 | TIR Toll-Interleukin receptor
|
ELERKGITPFIDNEIRRGESIGPELIRAIRGSKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAF |
| HMMPanther: PTHR11017 | 3-934 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LERKGITPFIDNEIRRGESIGPELIRAIRGSKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAFAKVATIAGYHSSNWDNEADMIKKITTDISNMLNNFTPSNDLDELIGMEAQLEKMKPLLCLGSDEVRMIGIWGPPGIGKTTIARFAFNQLSNRFQLSVFMDDLKPNPTRLCSDDYSLKLQLHQRFMSQITNHKDMVVSHLGVASNRLKDKKVLVVLDGVDRSVQLDAVAKEAWWFGPGSRIIITTQDRRIFRAHGVNHIYKVDFPTSDAALQIFCTYSFGQKSPKDGFEELAREVTQLSGELPLGLRVMGSYFKGMSKQEWINAIPRLRTSLDSDIGSILKFSYDALDDEDKYLFLYIACCYKSEWINEVEEYLAKKFVEVRQRLNVLVDKSLISISLLGVIEMHSLLKKLGREIVCKQSQEPGQRQFLYDEREVCEVLTGDATGSKSVIGINLDYSREGKEIDISEKAFEGMSNLQFLKVSCSHFTMKSTRGLSYLPHKLRLLKWSHCPMTCFPCNVNFEFLVELSMSNSKLEKLWEVTKPLRSLKRMDMRNSKELPDLSTATNLKRLNLSNCSSLIKLPSLPGNSMKELYIKGCSSLVEFPSFIGNAVNLETLDLSSLPNLLELPSFVENATNLKKLDLRFCSNLVELPFSIGNLQKLWWLELQGCSKLEVLPTNINLKSLYFLNLSDCSMLKSFPQISTNLEKLDLRGTAIEQVPPSIRSRPCSDILKMSYFENLKESPHALERITELWLTDTEIQELPPWVKKISRLSQLVVKGCRKLVSVPPLSDSIRYIDASDCESLEMIECSFPNQFVWLKFANCFKLNQEARNLIIQKSEFAVLPGGQVPAYFTHRAIGGGPLTIKLNDNPLPKSMRFKACILLLNK |
| HMMPanther: PTHR11017:SF20 | 3-934 | PTHR11017:SF20,SUBFAMILY NOT NAMED | LERKGITPFIDNEIRRGESIGPELIRAIRGSKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAFAKVATIAGYHSSNWDNEADMIKKITTDISNMLNNFTPSNDLDELIGMEAQLEKMKPLLCLGSDEVRMIGIWGPPGIGKTTIARFAFNQLSNRFQLSVFMDDLKPNPTRLCSDDYSLKLQLHQRFMSQITNHKDMVVSHLGVASNRLKDKKVLVVLDGVDRSVQLDAVAKEAWWFGPGSRIIITTQDRRIFRAHGVNHIYKVDFPTSDAALQIFCTYSFGQKSPKDGFEELAREVTQLSGELPLGLRVMGSYFKGMSKQEWINAIPRLRTSLDSDIGSILKFSYDALDDEDKYLFLYIACCYKSEWINEVEEYLAKKFVEVRQRLNVLVDKSLISISLLGVIEMHSLLKKLGREIVCKQSQEPGQRQFLYDEREVCEVLTGDATGSKSVIGINLDYSREGKEIDISEKAFEGMSNLQFLKVSCSHFTMKSTRGLSYLPHKLRLLKWSHCPMTCFPCNVNFEFLVELSMSNSKLEKLWEVTKPLRSLKRMDMRNSKELPDLSTATNLKRLNLSNCSSLIKLPSLPGNSMKELYIKGCSSLVEFPSFIGNAVNLETLDLSSLPNLLELPSFVENATNLKKLDLRFCSNLVELPFSIGNLQKLWWLELQGCSKLEVLPTNINLKSLYFLNLSDCSMLKSFPQISTNLEKLDLRGTAIEQVPPSIRSRPCSDILKMSYFENLKESPHALERITELWLTDTEIQELPPWVKKISRLSQLVVKGCRKLVSVPPLSDSIRYIDASDCESLEMIECSFPNQFVWLKFANCFKLNQEARNLIIQKSEFAVLPGGQVPAYFTHRAIGGGPLTIKLNDNPLPKSMRFKACILLLNK |
| superfamily: SSF52540 | 33-405 | SSF52540 | SKIAIILISRNYASSKWCLDELVEIMKCREELGQTVMPVFYEVDPSNVKKLTGDFGKVFRKTCAGKTKECIKRWRQAFAKVATIAGYHSSNWDNEADMIKKITTDISNMLNNFTPSNDLDELIGMEAQLEKMKPLLCLGSDEVRMIGIWGPPGIGKTTIARFAFNQLSNRFQLSVFMDDLKPNPTRLCSDDYSLKLQLHQRFMSQITNHKDMVVSHLGVASNRLKDKKVLVVLDGVDRSVQLDAVAKEAWWFGPGSRIIITTQDRRIFRAHGVNHIYKVDFPTSDAALQIFCTYSFGQKSPKDGFEELAREVTQLSGELPLGLRVMGSYFKGMSKQEWINAIPRLRTSLDSDIGSILKFSYDALDDEDKYLFL |
| Gene3D: G3DSA:3.40.50.300 | 130-187 | G3DSA:3.40.50.300 | MIKKITTDISNMLNNFTPSNDLDELIGMEAQLEKMKPLLCLGSDEVRMIGIWGPPGIG |
| HMMPfam: PF00931 IPR002182
|
158-416 | NB-ARC,NBS NB-ARC
|
EAQLEKMKPLLCLGSDEVRMIGIWGPPGIGKTTIARFAFNQLSNRFQLSVFMDDLKPNPTRLCSDDYSLKLQLHQRFMSQITNHKDMVVSHLGVASNRLKDKKVLVVLDGVDRSVQLDAVAKEAWWFGPGSRIIITTQDRRIFRAHGVNHIYKVDFPTSDAALQIFCTYSFGQKSPKDGFEELAREVTQLSGELPLGLRVMGSYFKGMSKQEWINAIPRLRTSLDSDIGSILKFSYDALDDEDKYLFLYIACCYKSEWI |
| HMMSmart: SM00382 IPR003593
|
174-314 | AAA,NBS ATPase, AAA+ type, core
|
EVRMIGIWGPPGIGKTTIARFAFNQLSNRFQLSVFMDDLKPNPTRLCSDDYSLKLQLHQRFMSQITNHKDMVVSHLGVASNRLKDKKVLVVLDGVDRSVQLDAVAKEAWWFGPGSRIIITTQDRRIFRAHGVNHIYKVDFP |
| FPrintScan: PR00364 IPR000767
|
177-192 | DISEASERSIST Disease resistance protein
|
MIGIWGPPGIGKTTIA |
| Gene3D: G3DSA:3.40.50.300 | 188-351 | G3DSA:3.40.50.300 | KTTIARFAFNQLSNRFQLSVFMDDLKPNPTRLCSDDYSLKLQLHQRFMSQITNHKDMVVSHLGVASNRLKDKKVLVVLDGVDRSVQLDAVAKEAWWFGPGSRIIITTQDRRIFRAHGVNHIYKVDFPTSDAALQIFCTYSFGQKSPKDGFEELAREVTQLSGEL |
| FPrintScan: PR00364 IPR000767
|
255-269 | DISEASERSIST Disease resistance protein
|
RLKDKKVLVVLDGVD |
| FPrintScan: PR00364 IPR000767
|
348-362 | DISEASERSIST Disease resistance protein
|
SGELPLGLRVMGSYF |
| superfamily: SSF46785 | 383-489 | SSF46785 | SDIGSILKFSYDALDDEDKYLFLYIACCYKSEWINEVEEYLAKKFVEVRQRLNVLVDKSLISISLLGVIEMHSLLKKLGREIVCKQSQEPGQRQFLYDEREVCEVLT |
| superfamily: SSF52058 | 483-870 | SSF52058,LRR | EVCEVLTGDATGSKSVIGINLDYSREGKEIDISEKAFEGMSNLQFLKVSCSHFTMKSTRGLSYLPHKLRLLKWSHCPMTCFPCNVNFEFLVELSMSNSKLEKLWEVTKPLRSLKRMDMRNSKELPDLSTATNLKRLNLSNCSSLIKLPSLPGNSMKELYIKGCSSLVEFPSFIGNAVNLETLDLSSLPNLLELPSFVENATNLKKLDLRFCSNLVELPFSIGNLQKLWWLELQGCSKLEVLPTNINLKSLYFLNLSDCSMLKSFPQISTNLEKLDLRGTAIEQVPPSIRSRPCSDILKMSYFENLKESPHALERITELWLTDTEIQELPPWVKKISRLSQLVVKGCRKLVSVPPLSDSIRYIDASDCESLEMIECSFPNQFVWLKFAN |
| Gene3D: G3DSA:3.80.10.10 | 513-854 | G3DSA:3.80.10.10 | DISEKAFEGMSNLQFLKVSCSHFTMKSTRGLSYLPHKLRLLKWSHCPMTCFPCNVNFEFLVELSMSNSKLEKLWEVTKPLRSLKRMDMRNSKELPDLSTATNLKRLNLSNCSSLIKLPSLPGNSMKELYIKGCSSLVEFPSFIGNAVNLETLDLSSLPNLLELPSFVENATNLKKLDLRFCSNLVELPFSIGNLQKLWWLELQGCSKLEVLPTNINLKSLYFLNLSDCSMLKSFPQISTNLEKLDLRGTAIEQVPPSIRSRPCSDILKMSYFENLKESPHALERITELWLTDTEIQELPPWVKKISRLSQLVVKGCRKLVSVPPLSDSIRYIDASDCESLEM |
| HMMPfam: PF07725 IPR011713
|
571-587 | LRR_3 Leucine-rich repeat 3
|
FLVELSMSNSKLEKLWE |
| HMMPfam: PF00560 IPR001611
|
614-632 | LRR_1 Leucine-rich repeat
|
NLKRLNLSNCSSLIKLPSL |
| HMMPfam: PF00560 IPR001611
|
684-706 | LRR_1 Leucine-rich repeat
|
NLKKLDLRFCSNLVELPFSIGNL |
| FPrintScan: PR00364 IPR000767
|
727-743 | DISEASERSIST Disease resistance protein
|
INLKSLYFLNLSDCSML |
| HMMPfam: PF13504 | 731-747 | LRR_7,Leucine rich repeat | SLYFLNLSDCSMLKSFP |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
