PRGDB00061503 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438254 (FJ842836) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGTTGTTTCTAAAGCATGTGAAGCTCCAGTTATGGATGGCCACAAACTTCGAGACGACTCCCACCGAGAAGGGGAGACTAGTGGTTGGGAAAAGCCTGGAAATTTCTGGAGGTAGAATTGTACTGGTGAACGTAAAAGGAGCAAAACAACCCAGATGGTATGTTTTGTCAAGTGAAGATATCCAACCAATCACCCCGATGTCTCTAGTCAAATTCTTTGCAGTTCCGAATCACCGCGTTGTGGTTGTTCTTGCTATGGCATCTTGTTCTTCCTCCTCTTCCCGCAGCTGGTCGTACGATGTTTTCCCTAGCTTTAGCGGAGAGGATGTCCGCAAAACATTCCTCAGCCACTTTCTCAGGGAGCTTGAGCGGAATTCGATCGTCGCCTTCAAAGACAACGAGATGGAGAGGAGCCAGTCTATCGCCCCGGAGCTTGTACAAGCCATTAGAGATTCGAGGATCGCAGTGGTTGTGTTCTCCAAAAACTACGCATCTTCAAGCTGGTGTCTAAATGAGTTGCTGGAGATTCTGCAATGCAATGAAGAGTTTGGCCAGCTGGTGATACCGATCTTTTACGGTTTGGATCCTTCTCACCTTAGGAAACAGACAGGAGACTTTGGAGAGGCATTTAAAAAGACTTGCCTAAACCAAACACATGAAGTGGAAGACCAGTGGAAGCAAGCTTTGACCAATGTTGCAAATATCCTCGGATACCATTCTAAAAACTGTGATAGTGAAGCTGCAATGATTGAAGAAATCTCCAATGATATATTAGGTAAACTTGATGTTACTCCATCGTCTAATGAGTTTGAGGACTTTGTCGGCATCAAAGATCATATCGCAGAGGTGATATTACTGATGAATTTGGAATCCAAGGAAGTGAAGATGGTTGGGATATGGGGTACTTCGGGAATTGGCAAGACTACTATTGCAAGAGCCTTATTTTGTAATATCTCTAATCAGTTCCAGAGAAGTGTTTTCATAGACAGGGCCTTCATATCGAAGAGTGTGGAAGTTTATGGCCGAGCCAATCCAGTTGACTATAACATGAAGCTGCGCTTGAGGATGAACTTCCTATCAGAAATCTTGGAGAGAAAGAACATGAAGATCGGTGCAATGGAAGAAAGGCTAAAGCACCAGAAAGTTCTTATCGTTATCGATGATTTGGATGATCAATACGTGTTAGATGCTTTAGCGGGTCAAACCAAATGGTTTGGGAGTGGGAGTAGAATTATTGTCGTTACAACTGATAAGCAACTCTTAAAAGCCCATGGGATTGATTCTATATACGAGGTTGGTCTCCCATCCGATGAACAAGCTCTAGAGATGTTCTGTCGATCTGCTTTCAGGCAAGACTCTCCACCTGATGGTTTGATGGAGTTTGCTTCCGAAGTTGTGGAATGTGCTGGTAGTCTTCCTTTGGGTCTCGACGTTTTGGGTTCGTCTTTGCGCGGTTTGAACAAGGAGGATTGTTTGAATATGCTGCCTAGGCTTAGAAGAAGTCTAGATGGTAAAATAGAGGAGACACTAAGAGTCGGTTATGATGGGTTACTTGGAGAAGATAAGGCGATATTTCGCCATATTGCATGTCTTTTCAATCATGTAGACGTCAAAGACATCAAGCTGTTTCTTGCTGATAGTGAGTTGGATGTTGATATAGGGTTGAATAACCTAGTTAACAAGTCCCTCATCCAGGTGAGGTGGGGTAAAGTGGAGATGCACCATTTGCTACAAGAAATGGGTAGAAACGTGGTTTGGTTACAGTCCATTAAAAAACCTCAAAAGCGGGAATTTCTAGTGGATTCAAAAGACATATGTGATGTACTCAGTGAAAGCATTGGTACTTCAAAGCTCTTAGGGATATCATTGAATGTTGATGAGATTGATGAGTTACAAGTACATGAGACTGCCTTCAAAGGGATGCGTAATCTCCATTTTCTAGAAATTTACTCGAACAAAGTTAGGGTTGTAAATGGAGACAAACTGAAGTTACCCAAAAGCTTCGACTGGTTGCCTCCTAAGCTTAAACTACTGTGTTGGTCTGGGTATCCAATGCGATGTATGCCTTCTACGCTTTGTACAGATAGGCTCGTCAAGCTTAAAATGCGGAATAGCAAACTAGAAAGGTTGTGGAAAGGAGTTATGTCTCTTACATGTCTCATTGAGATGGATTTGTGTGGCTCACATGACCTGAAAGAAATCCCAGATCTTACGACGGCCACCAATCTTGAAACACTTAATCTTCAATCTTGTAGGAGTTTGGTAGAACTTCCTTCCTCAATACGAAATCTCAATAAACTGATAAAATTGGACATGCAGTTCTGTAAAAAGCTGAAGACTCTCCCAACTGGCATTAATCTCAAATCTCTCGACCACATCAATCTCAGTTTCTGCTCACAGTTGAGGACTTTTCCCAAAATCTCAACCAACATCTCATATCTCTTTCTTGAGGAAACATCAGTGGTAGAGTTCCCCACTAATTTGCATCTCAAGAATCTTGTTAAGCTTCACATGTCAAAAGTAACGACAAATAAACAATGGAAAATGTTCCAGCCGCTTACACCCTTCATGCCTATGTTGTCTCCCACTTTGACGGAGTTGTATCTCTTCAACATCCCAAGTTTAGTGGAGCTTCCTTCCTCATTTCGGAATCTCAACAAACTAAGAGATTTGAAGATTAGTAGATGCACGAATCTTGAAACTCTTCCCACAGGCATCAACCTCAAATCTCTCGAGAGCCTCGACTTCACTAAGTGCTCACGGTTGATGACTTTTCCTAATATCTCAACCAACATCTCAGTTCTCAATCTAAGCTATACAGCGATAGAAGAGGTTCCTTGGTGGGTCGAGATCTTCTCTAAGCTCAAAAACCTAAATATGGAATGTTGCAGTAAGTTAGAATATGTACACCCAAACATTTCTAAACTGCCACGTCTTGCTGTCGACTTTTCACACTGTGAGGCACTGAACATAGCTGATTTGAGTAGCCGAACTTCGTCAAGTGAGTTGATAACGGATGCATCTAATAGCGACACAGTTTCCGAGGAGTCTTCCTCAGATAAGTTTATCCCAAAAGTCGGTTTCATAAACTACTTCAAGTTTAATCAAGACGTTCTGTTACAACAACTATCAGTCGGCTTCAAGTCCATGACGTTTCTAGGTGAAGCAGTGCCTTCATATTTCACTCACCATACTACAGAATCTTCTTTGACCATCCCTCTACTTGACACTTCTCTCACGCAAACGTTTTTCAGATTTAAGGTTTGTGCAGTGGTTGTTTTCGACACTATGTCTAAGACTGGTCCCAGTGGATTAAGTATCCGTGTAAAATGTCGGTTCAAAGGCATATGCGGGAACATATTTGATTCCTCAAGTGAGGCACATAGCTTTCATACGCTTGAGAAGGATAGTCGGTTGTTTATATTCGACTGTTGTGTCCCTCTGAACAAAGAGAATGCTCTTGTTTCTCATCACGTGGATATGGGGATTCAGATAAGCGGTTGGCAAGAAGACTCTACATTCAGATTAACAGGATGGGGTATACGCCTCTGTTCTTCGCCTGAGAACGGACTTGCTGATCCAGAATCTCTTCCACATGTTTGTAAAGCCGACGAAGATGAAATGGTTAGTGATGGATGTCATAAGACTGAACTAGGTGAAGAATTTGGAAGCAGCGATGTAGAGATAGAACACAGTGAAAAATGTGGAGGCAGTGATACGGAGATGAAGGGTAGCAACAAAACAGTCCAGGTATGCATTAAGGATGAGACTGAATGTGGAGACAACATTGTGGAGAGAACGGAAAGCAGGAAGGGAATGGGAATGATTATACTGGGGAGATTACTATTCAAGAAACTGCTGAATCGCTATGCAACCAAACCGCAAGATACATAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MLFLKHVKLQLWMATNFETTPTEKGRLVVGKSLEISGGRIVLVNVKGAKQPRWYVLSSEDIQPITPMSLVKFFAVPNHRVVVVLAMASCSSSSSRSWSYDVFPSFSGEDVRKTFLSHFLRELERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANILGYHSKNCDSEAAMIEEISNDILGKLDVTPSSNEFEDFVGIKDHIAEVILLMNLESKEVKMVGIWGTSGIGKTTIARALFCNISNQFQRSVFIDRAFISKSVEVYGRANPVDYNMKLRLRMNFLSEILERKNMKIGAMEERLKHQKVLIVIDDLDDQYVLDALAGQTKWFGSGSRIIVVTTDKQLLKAHGIDSIYEVGLPSDEQALEMFCRSAFRQDSPPDGLMEFASEVVECAGSLPLGLDVLGSSLRGLNKEDCLNMLPRLRRSLDGKIEETLRVGYDGLLGEDKAIFRHIACLFNHVDVKDIKLFLADSELDVDIGLNNLVNKSLIQVRWGKVEMHHLLQEMGRNVVWLQSIKKPQKREFLVDSKDICDVLSESIGTSKLLGISLNVDEIDELQVHETAFKGMRNLHFLEIYSNKVRVVNGDKLKLPKSFDWLPPKLKLLCWSGYPMRCMPSTLCTDRLVKLKMRNSKLERLWKGVMSLTCLIEMDLCGSHDLKEIPDLTTATNLETLNLQSCRSLVELPSSIRNLNKLIKLDMQFCKKLKTLPTGINLKSLDHINLSFCSQLRTFPKISTNISYLFLEETSVVEFPTNLHLKNLVKLHMSKVTTNKQWKMFQPLTPFMPMLSPTLTELYLFNIPSLVELPSSFRNLNKLRDLKISRCTNLETLPTGINLKSLESLDFTKCSRLMTFPNISTNISVLNLSYTAIEEVPWWVEIFSKLKNLNMECCSKLEYVHPNISKLPRLAVDFSHCEALNIADLSSRTSSSELITDASNSDTVSEESSSDKFIPKVGFINYFKFNQDVLLQQLSVGFKSMTFLGEAVPSYFTHHTTESSLTIPLLDTSLTQTFFRFKVCAVVVFDTMSKTGPSGLSIRVKCRFKGICGNIFDSSSEAHSFHTLEKDSRLFIFDCCVPLNKENALVSHHVDMGIQISGWQEDSTFRLTGWGIRLCSSPENGLADPESLPHVCKADEDEMVSDGCHKTELGEEFGSSDVEIEHSEKCGGSDTEMKGSNKTVQVCIKDETECGDNIVERTESRKGMGMIILGRLLFKKLLNRYATKPQDT |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
87-238 | TIR Toll-Interleukin receptor
|
ASCSSSSSRSWSYDVFPSFSGEDVRKTFLSHFLRELERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANILGY |
| Gene3D: G3DSA:3.40.50.10140 | 95-236 | G3DSA:3.40.50.10140 | RSWSYDVFPSFSGEDVRKTFLSHFLRELERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANIL |
| ProfileScan: PS50104 IPR000157
|
97-235 | TIR Toll-Interleukin receptor
|
WSYDVFPSFSGEDVRKTFLSHFLRELERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANI |
| HMMSmart: SM00255 IPR000157
|
98-235 | TIR Toll-Interleukin receptor
|
SYDVFPSFSGEDVRKTFLSHFLRELERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANI |
| HMMPfam: PF01582 IPR000157
|
101-230 | TIR Toll-Interleukin receptor
|
VFPSFSGEDVRKTFLSHFLRELERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALT |
| HMMPanther: PTHR11017 | 122-1183 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANILGYHSKNCDSEAAMIEEISNDILGKLDVTPSSNEFEDFVGIKDHIAEVILLMNLESKEVKMVGIWGTSGIGKTTIARALFCNISNQFQRSVFIDRAFISKSVEVYGRANPVDYNMKLRLRMNFLSEILERKNMKIGAMEERLKHQKVLIVIDDLDDQYVLDALAGQTKWFGSGSRIIVVTTDKQLLKAHGIDSIYEVGLPSDEQALEMFCRSAFRQDSPPDGLMEFASEVVECAGSLPLGLDVLGSSLRGLNKEDCLNMLPRLRRSLDGKIEETLRVGYDGLLGEDKAIFRHIACLFNHVDVKDIKLFLADSELDVDIGLNNLVNKSLIQVRWGKVEMHHLLQEMGRNVVWLQSIKKPQKREFLVDSKDICDVLSESIGTSKLLGISLNVDEIDELQVHETAFKGMRNLHFLEIYSNKVRVVNGDKLKLPKSFDWLPPKLKLLCWSGYPMRCMPSTLCTDRLVKLKMRNSKLERLWKGVMSLTCLIEMDLCGSHDLKEIPDLTTATNLETLNLQSCRSLVELPSSIRNLNKLIKLDMQFCKKLKTLPTGINLKSLDHINLSFCSQLRTFPKISTNISYLFLEETSVVEFPTNLHLKNLVKLHMSKVTTNKQWKMFQPLTPFMPMLSPTLTELYLFNIPSLVELPSSFRNLNKLRDLKISRCTNLETLPTGINLKSLESLDFTKCSRLMTFPNISTNISVLNLSYTAIEEVPWWVEIFSKLKNLNMECCSKLEYVHPNISKLPRLAVDFSHCEALNIADLSSRTSSSELITDASNSDTVSEESSSDKFIPKVGFINYFKFNQDVLLQQLSVGFKSMTFLGEAVPSYFTHHTTESSLTIPLLDTSLTQTFFRFKVCAVVVFDTMSKTGPSGLSIRVKCRFKGICGNIFDSSSEAHSFHTLEKDSRLFIFDCCVPLNKENALVSHHVDMGIQISGWQEDSTFRLTGWGIRL |
| HMMPanther: PTHR11017:SF20 | 122-1183 | PTHR11017:SF20,SUBFAMILY NOT NAMED | LERNSIVAFKDNEMERSQSIAPELVQAIRDSRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANILGYHSKNCDSEAAMIEEISNDILGKLDVTPSSNEFEDFVGIKDHIAEVILLMNLESKEVKMVGIWGTSGIGKTTIARALFCNISNQFQRSVFIDRAFISKSVEVYGRANPVDYNMKLRLRMNFLSEILERKNMKIGAMEERLKHQKVLIVIDDLDDQYVLDALAGQTKWFGSGSRIIVVTTDKQLLKAHGIDSIYEVGLPSDEQALEMFCRSAFRQDSPPDGLMEFASEVVECAGSLPLGLDVLGSSLRGLNKEDCLNMLPRLRRSLDGKIEETLRVGYDGLLGEDKAIFRHIACLFNHVDVKDIKLFLADSELDVDIGLNNLVNKSLIQVRWGKVEMHHLLQEMGRNVVWLQSIKKPQKREFLVDSKDICDVLSESIGTSKLLGISLNVDEIDELQVHETAFKGMRNLHFLEIYSNKVRVVNGDKLKLPKSFDWLPPKLKLLCWSGYPMRCMPSTLCTDRLVKLKMRNSKLERLWKGVMSLTCLIEMDLCGSHDLKEIPDLTTATNLETLNLQSCRSLVELPSSIRNLNKLIKLDMQFCKKLKTLPTGINLKSLDHINLSFCSQLRTFPKISTNISYLFLEETSVVEFPTNLHLKNLVKLHMSKVTTNKQWKMFQPLTPFMPMLSPTLTELYLFNIPSLVELPSSFRNLNKLRDLKISRCTNLETLPTGINLKSLESLDFTKCSRLMTFPNISTNISVLNLSYTAIEEVPWWVEIFSKLKNLNMECCSKLEYVHPNISKLPRLAVDFSHCEALNIADLSSRTSSSELITDASNSDTVSEESSSDKFIPKVGFINYFKFNQDVLLQQLSVGFKSMTFLGEAVPSYFTHHTTESSLTIPLLDTSLTQTFFRFKVCAVVVFDTMSKTGPSGLSIRVKCRFKGICGNIFDSSSEAHSFHTLEKDSRLFIFDCCVPLNKENALVSHHVDMGIQISGWQEDSTFRLTGWGIRL |
| superfamily: SSF52540 | 152-526 | SSF52540 | SRIAVVVFSKNYASSSWCLNELLEILQCNEEFGQLVIPIFYGLDPSHLRKQTGDFGEAFKKTCLNQTHEVEDQWKQALTNVANILGYHSKNCDSEAAMIEEISNDILGKLDVTPSSNEFEDFVGIKDHIAEVILLMNLESKEVKMVGIWGTSGIGKTTIARALFCNISNQFQRSVFIDRAFISKSVEVYGRANPVDYNMKLRLRMNFLSEILERKNMKIGAMEERLKHQKVLIVIDDLDDQYVLDALAGQTKWFGSGSRIIVVTTDKQLLKAHGIDSIYEVGLPSDEQALEMFCRSAFRQDSPPDGLMEFASEVVECAGSLPLGLDVLGSSLRGLNKEDCLNMLPRLRRSLDGKIEETLRVGYDGLLGEDKAIFR |
| HMMPfam: PF00931 IPR002182
|
277-539 | NB-ARC,NBS NB-ARC
|
KDHIAEVILLMNLESKEVKMVGIWGTSGIGKTTIARALFCNISNQFQRSVFIDRAFISKSVEVYGRANPVDYNMKLRLRMNFLSEILERKNMKIGAMEERLKHQKVLIVIDDLDDQYVLDALAGQTKWFGSGSRIIVVTTDKQLLKAHGIDSIYEVGLPSDEQALEMFCRSAFRQDSPPDGLMEFASEVVECAGSLPLGLDVLGSSLRGLNKEDCLNMLPRLRRSLDGKIEETLRVGYDGLLGEDKAIFRHIACLFNHVDVKD |
| Gene3D: G3DSA:3.40.50.300 | 290-337 | G3DSA:3.40.50.300 | ESKEVKMVGIWGTSGIGKTTIARALFCNISNQFQRSVFIDRAFISKSV |
| FPrintScan: PR00364 IPR000767
|
296-311 | DISEASERSIST Disease resistance protein
|
MVGIWGTSGIGKTTIA |
| Gene3D: G3DSA:3.40.50.300 | 371-451 | G3DSA:3.40.50.300 | GAMEERLKHQKVLIVIDDLDDQYVLDALAGQTKWFGSGSRIIVVTTDKQLLKAHGIDSIYEVGLPSDEQALEMFCRSAFRQ |
| FPrintScan: PR00364 IPR000767
|
376-390 | DISEASERSIST Disease resistance protein
|
RLKHQKVLIVIDDLD |
| FPrintScan: PR00364 IPR000767
|
469-483 | DISEASERSIST Disease resistance protein
|
AGSLPLGLDVLGSSL |
| superfamily: SSF52058 | 572-979 | SSF52058,LRR | EMHHLLQEMGRNVVWLQSIKKPQKREFLVDSKDICDVLSESIGTSKLLGISLNVDEIDELQVHETAFKGMRNLHFLEIYSNKVRVVNGDKLKLPKSFDWLPPKLKLLCWSGYPMRCMPSTLCTDRLVKLKMRNSKLERLWKGVMSLTCLIEMDLCGSHDLKEIPDLTTATNLETLNLQSCRSLVELPSSIRNLNKLIKLDMQFCKKLKTLPTGINLKSLDHINLSFCSQLRTFPKISTNISYLFLEETSVVEFPTNLHLKNLVKLHMSKVTTNKQWKMFQPLTPFMPMLSPTLTELYLFNIPSLVELPSSFRNLNKLRDLKISRCTNLETLPTGINLKSLESLDFTKCSRLMTFPNISTNISVLNLSYTAIEEVPWWVEIFSKLKNLNMECCSKLEYVHPNISKLPRL |
| Gene3D: G3DSA:3.80.10.10 | 631-840 | G3DSA:3.80.10.10 | LQVHETAFKGMRNLHFLEIYSNKVRVVNGDKLKLPKSFDWLPPKLKLLCWSGYPMRCMPSTLCTDRLVKLKMRNSKLERLWKGVMSLTCLIEMDLCGSHDLKEIPDLTTATNLETLNLQSCRSLVELPSSIRNLNKLIKLDMQFCKKLKTLPTGINLKSLDHINLSFCSQLRTFPKISTNISYLFLEETSVVEFPTNLHLKNLVKLHMSK |
| HMMPfam: PF07725 IPR011713
|
697-714 | LRR_3 Leucine-rich repeat 3
|
LVKLKMRNSKLERLWKGV |
| HMMPfam: PF00560 IPR001611
|
742-764 | LRR_1 Leucine-rich repeat
|
NLETLNLQSCRSLVELPSSIRNL |
| Gene3D: G3DSA:3.80.10.10 | 861-996 | G3DSA:3.80.10.10 | SPTLTELYLFNIPSLVELPSSFRNLNKLRDLKISRCTNLETLPTGINLKSLESLDFTKCSRLMTFPNISTNISVLNLSYTAIEEVPWWVEIFSKLKNLNMECCSKLEYVHPNISKLPRLAVDFSHCEALNIADLSS |
| FPrintScan: PR00364 IPR000767
|
906-922 | DISEASERSIST Disease resistance protein
|
INLKSLESLDFTKCSRL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
