PRGDB00061507 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438246 (FJ842832) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGAGGCAGAGACGGCAGCTTCAGATCCGTGGTGATCGTCCTTCACCTCTCAGTGTCCACAAAGACTCCCACAAGATTAAGAAACCTACTCCTCATCGAGAGCCGGTGGTGGTCTCCTCGCCCAAGGTCATACACACCCCATTGAAGGATTTCAGAAGCGTCGTCCCCCGACTCACCGGGGTTGACAACTCTGTTTTGGAATTAGAATTCATTTCCGCCTTTGGACCATCTGCCTCCAGAGGTTATCAAGTCGTAACTATATACAGGAGAGGTGACATAAGCAATGATGATTTCAATAAGGTCGTCAGGCGACTCACAAGGAATCTTAACTCTGTTTCAGACCTTAGCAACTCTGCCTCTGAGTTTAGCACACCTGCTGCTGCATCATCCGCCTTGAAAGAATATGATGTCGTTTTGAGATACAGAAGAGGTTGCATAAGCGACGACAATTTCATCACCCATCTTCGTGCAGCCTTCTACCGGAGAGGGGTCTCTCTCCGTGAAGACATCGATGAAGTGGACGCAGTTCCAGAATGTAGGGTTTTGATCATATTCTTAACCAGCACATACGTCCCTTCCAACCTCTTAAACATTGTTGAACAACAAAGTAAAAAGCCTCGAGTGGTTTATCCTATTTTTTATGGAATATCACCATCTGATTTGATCAGTAACCGCAATTATGGGAGACCTTTTCACCAAGACGAGGCAAAAAGGTTGCAGGCTGCTTTGGAGGAAATAACTCAGATGCATGGCTACATATTGACAGATAAGTCCGAGTCTGAACTTATAGATGAGATTGTCAGAGATGCTTTGAACGTGCTACGTTCCAACGAAAAGAAGAATATGATTGGGATGGATATGCAGATAAAGGAGATCCTGTCACTGCTATGCACTGAGTCTCAAGATGTTCGCCGCATAGGTATATGGGGTGCGGTTGGTATAGGAAAAACAGCCATTGCTGAAGAAATTTTCCATAGAATCTCTGTCCAATATGAGACTTGTGTCTTCCTCAAGGATCTCCATAAAGAAGTCGAGCTAAAAGGGTACGATGCTGTGAGGGAGGAACTATTGTCTAAACTTTTAGAGGTAGAACCAGATGTCATACGTACTTCAAACATTAAAGTGAGTTTCTTGAGGAGCAGGCTCCAGCGTAAAAGTGCCCTCGTAGTTCTCGACGATGTGAATGATTTCAGGGATGTTGAAACCTTCGCAGAGATGCTTAGCTATTTTGGTCCAAGAAGCAGAGTAATCATAACGTCTAGGAACAGACATGTTTTTATACTATCCAAAACCGATTATGTCTATGAGGTCAAGCCATTAGAATTTCCTAACTCTCTACATCTTCTGAACCCCGGAATATTTCAGAGTGGTCTGTCACCCGAGCTTTACAAGACATTGTCACTTGAGTTGGTCAAATTCTCAAATGGAAATCCTCAGGTTCTTCAGTTCTTAAGCAGAGAATGGAAAAGTTTATCCAAAGAAATTCAAAAATCTTCAGCCATTTACATTCCAGGTATATTCGAAAGAAGCTGTTGTGGGCTTGATGAAAACGAAAAGAGTATATTTTTAGACATTGCATGTTTCTTTAGAAAGATGGATAAAGACGACGTTGCAATGTTGCTTGATGGATGTGGTTTCTCTGCACATATTGGGTTTAAAAACCTTGTTGACAAATCACTGTTAACCATATCACACAATACGGTGGACATGCTCTGGTTCCTCCAGGCAACAGGCCGAGAAATTGTTCGCCAAGAATCTATTGACAGGCCAGGAGACCGCAGCAGGTTGTGGAATGCTGAAGATATTAGAGACGTATTCCTAGACAACATTGGCACGTCAGATATTGAAGGGCTTTTCCTGGACATGTCGCAGCTGAAATTCGATGCAAGTCCCAATGTATTCGACAAAATGTGTAACCTTAGACTGTTAAAGTTTTATTTCTCCGAGTTGATAGAGAACCATGGAGTGTCTTTACCTCAAGGTCTTGAATACTTGCCGACCAAGCTAAGGCTTCTGCACTGGGAATACTATCCTATAAGCTCATTGCCGCAATGTTTTGATCCAAAGAACCTCATAGAGCTTAACATGCCAAATAGTTGTGTGAAGAAACTTTGGAAAGGCAAAAAGAGTCTGGAAAACCTTAAAAAGATGAGACTGAGCTACTCCTCCCAGTTAACAAAGCTTCCAAGACTTACAAGTGCGCAAAATCTCGAGCTTCTTGATCTTGAAGGTTGCAAGAGTTTGGAAAGCATTAGCCACTCTATCTGTTATCTTAAAAAGCTTGTTTCTCTGAATCTGAAGGACTGCTCGAATCTGGAGAGTGTACCATCTACAAGTGATTTAGAGTCTCTTGAGGTCTTGAATCTTTCTGGCTGCTCGAAGCTAGAGAATTTTCCGGAGATCTCACCAAATGTGAAAGAACTGTACTTGGGTGGGACTATGATACGAGAAATACCATCATCGATCAAGAACTTGGTACTTCTTGAAAAACTTGACCTGGAAAACAGCAGACACCTCGTGATTCTTCCAACGAGCATGTGCAAGTTAAAGCATCTCGAAACGCTGAATCTGTCAGGCTGCTCAAGCCTTGAGTATTTTCCAGACTTCTCTAGAAAGATGAAATGCTTAAAGTCTCTGGATTTGAGCAGGACGGCCATTAGAGAGCTACCCTCCTCCATTTCATATCTGATTGCTCTTGAAGAAGTAAGATTTGTGGGATGCAAGAGCCTCGTAAGATTGCCTGACAACGCATGGAGCCTAAGATTCAAGGTTGAATTCCGTCAGATTGATACAGAGAAGTTTTCGAAACTGTGGAATAGATTAGATTGGCTCAAAAAAGTTCACATCTCTTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MRQRRQLQIRGDRPSPLSVHKDSHKIKKPTPHREPVVVSSPKVIHTPLKDFRSVVPRLTGVDNSVLELEFISAFGPSASRGYQVVTIYRRGDISNDDFNKVVRRLTRNLNSVSDLSNSASEFSTPAAASSALKEYDVVLRYRRGCISDDNFITHLRAAFYRRGVSLREDIDEVDAVPECRVLIIFLTSTYVPSNLLNIVEQQSKKPRVVYPIFYGISPSDLISNRNYGRPFHQDEAKRLQAALEEITQMHGYILTDKSESELIDEIVRDALNVLRSNEKKNMIGMDMQIKEILSLLCTESQDVRRIGIWGAVGIGKTAIAEEIFHRISVQYETCVFLKDLHKEVELKGYDAVREELLSKLLEVEPDVIRTSNIKVSFLRSRLQRKSALVVLDDVNDFRDVETFAEMLSYFGPRSRVIITSRNRHVFILSKTDYVYEVKPLEFPNSLHLLNPGIFQSGLSPELYKTLSLELVKFSNGNPQVLQFLSREWKSLSKEIQKSSAIYIPGIFERSCCGLDENEKSIFLDIACFFRKMDKDDVAMLLDGCGFSAHIGFKNLVDKSLLTISHNTVDMLWFLQATGREIVRQESIDRPGDRSRLWNAEDIRDVFLDNIGTSDIEGLFLDMSQLKFDASPNVFDKMCNLRLLKFYFSELIENHGVSLPQGLEYLPTKLRLLHWEYYPISSLPQCFDPKNLIELNMPNSCVKKLWKGKKSLENLKKMRLSYSSQLTKLPRLTSAQNLELLDLEGCKSLESISHSICYLKKLVSLNLKDCSNLESVPSTSDLESLEVLNLSGCSKLENFPEISPNVKELYLGGTMIREIPSSIKNLVLLEKLDLENSRHLVILPTSMCKLKHLETLNLSGCSSLEYFPDFSRKMKCLKSLDLSRTAIRELPSSISYLIALEEVRFVGCKSLVRLPDNAWSLRFKVEFRQIDTEKFSKLWNRLDWLKKVHIS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
123-252 | TIR Toll-Interleukin receptor
|
STPAAASSALKEYDVVLRYRRGCISDDNFITHLRAAFYRRGVSLREDIDEVDAVPECRVLIIFLTSTYVPSNLLNIVEQQSKKPRVVYPIFYGISPSDLISNRNYGRPFHQDEAKRLQAALEEITQMHGY |
| HMMPanther: PTHR11017 | 131-922 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ALKEYDVVLRYRRGCISDDNFITHLRAAFYRRGVSLREDIDEVDAVPECRVLIIFLTSTYVPSNLLNIVEQQSKKPRVVYPIFYGISPSDLISNRNYGRPFHQDEAKRLQAALEEITQMHGYILTDKSESELIDEIVRDALNVLRSNEKKNMIGMDMQIKEILSLLCTESQDVRRIGIWGAVGIGKTAIAEEIFHRISVQYETCVFLKDLHKEVELKGYDAVREELLSKLLEVEPDVIRTSNIKVSFLRSRLQRKSALVVLDDVNDFRDVETFAEMLSYFGPRSRVIITSRNRHVFILSKTDYVYEVKPLEFPNSLHLLNPGIFQSGLSPELYKTLSLELVKFSNGNPQVLQFLSREWKSLSKEIQKSSAIYIPGIFERSCCGLDENEKSIFLDIACFFRKMDKDDVAMLLDGCGFSAHIGFKNLVDKSLLTISHNTVDMLWFLQATGREIVRQESIDRPGDRSRLWNAEDIRDVFLDNIGTSDIEGLFLDMSQLKFDASPNVFDKMCNLRLLKFYFSELIENHGVSLPQGLEYLPTKLRLLHWEYYPISSLPQCFDPKNLIELNMPNSCVKKLWKGKKSLENLKKMRLSYSSQLTKLPRLTSAQNLELLDLEGCKSLESISHSICYLKKLVSLNLKDCSNLESVPSTSDLESLEVLNLSGCSKLENFPEISPNVKELYLGGTMIREIPSSIKNLVLLEKLDLENSRHLVILPTSMCKLKHLETLNLSGCSSLEYFPDFSRKMKCLKSLDLSRTAIRELPSSISYLIALEEVRFVGCKSLVRLPDNAWSLRF |
| HMMPanther: PTHR11017:SF20 | 131-922 | PTHR11017:SF20,SUBFAMILY NOT NAMED | ALKEYDVVLRYRRGCISDDNFITHLRAAFYRRGVSLREDIDEVDAVPECRVLIIFLTSTYVPSNLLNIVEQQSKKPRVVYPIFYGISPSDLISNRNYGRPFHQDEAKRLQAALEEITQMHGYILTDKSESELIDEIVRDALNVLRSNEKKNMIGMDMQIKEILSLLCTESQDVRRIGIWGAVGIGKTAIAEEIFHRISVQYETCVFLKDLHKEVELKGYDAVREELLSKLLEVEPDVIRTSNIKVSFLRSRLQRKSALVVLDDVNDFRDVETFAEMLSYFGPRSRVIITSRNRHVFILSKTDYVYEVKPLEFPNSLHLLNPGIFQSGLSPELYKTLSLELVKFSNGNPQVLQFLSREWKSLSKEIQKSSAIYIPGIFERSCCGLDENEKSIFLDIACFFRKMDKDDVAMLLDGCGFSAHIGFKNLVDKSLLTISHNTVDMLWFLQATGREIVRQESIDRPGDRSRLWNAEDIRDVFLDNIGTSDIEGLFLDMSQLKFDASPNVFDKMCNLRLLKFYFSELIENHGVSLPQGLEYLPTKLRLLHWEYYPISSLPQCFDPKNLIELNMPNSCVKKLWKGKKSLENLKKMRLSYSSQLTKLPRLTSAQNLELLDLEGCKSLESISHSICYLKKLVSLNLKDCSNLESVPSTSDLESLEVLNLSGCSKLENFPEISPNVKELYLGGTMIREIPSSIKNLVLLEKLDLENSRHLVILPTSMCKLKHLETLNLSGCSSLEYFPDFSRKMKCLKSLDLSRTAIRELPSSISYLIALEEVRFVGCKSLVRLPDNAWSLRF |
| superfamily: SSF52540 | 265-486 | SSF52540 | EIVRDALNVLRSNEKKNMIGMDMQIKEILSLLCTESQDVRRIGIWGAVGIGKTAIAEEIFHRISVQYETCVFLKDLHKEVELKGYDAVREELLSKLLEVEPDVIRTSNIKVSFLRSRLQRKSALVVLDDVNDFRDVETFAEMLSYFGPRSRVIITSRNRHVFILSKTDYVYEVKPLEFPNSLHLLNPGIFQSGLSPELYKTLSLELVKFSNGNPQVLQFLSR |
| HMMPfam: PF00931 IPR002182
|
287-546 | NB-ARC,NBS NB-ARC
|
MQIKEILSLLCTESQDVRRIGIWGAVGIGKTAIAEEIFHRISVQYETCVFLKDLHKEVELKGYDAVREELLSKLLEVEPDVIRTSNIKVSFLRSRLQRKSALVVLDDVNDFRDVETFAEMLSYFGPRSRVIITSRNRHVFILSKTDYVYEVKPLEFPNSLHLLNPGIFQSGLSPELYKTLSLELVKFSNGNPQVLQFLSREWKSLSKEIQKSSAIYIPGIFERSCCGLDENEKSIFLDIACFFRKMDKDDVAMLLDGCGF |
| Gene3D: G3DSA:3.40.50.300 | 288-423 | G3DSA:3.40.50.300 | QIKEILSLLCTESQDVRRIGIWGAVGIGKTAIAEEIFHRISVQYETCVFLKDLHKEVELKGYDAVREELLSKLLEVEPDVIRTSNIKVSFLRSRLQRKSALVVLDDVNDFRDVETFAEMLSYFGPRSRVIITSRNR |
| FPrintScan: PR00364 IPR000767
|
305-320 | DISEASERSIST Disease resistance protein
|
RIGIWGAVGIGKTAIA |
| FPrintScan: PR00364 IPR000767
|
381-395 | DISEASERSIST Disease resistance protein
|
RLQRKSALVVLDDVN |
| superfamily: SSF46785 | 501-607 | SSF46785 | IYIPGIFERSCCGLDENEKSIFLDIACFFRKMDKDDVAMLLDGCGFSAHIGFKNLVDKSLLTISHNTVDMLWFLQATGREIVRQESIDRPGDRSRLWNAEDIRDVFL |
| superfamily: SSF52058 | 581-948 | SSF52058,LRR | IVRQESIDRPGDRSRLWNAEDIRDVFLDNIGTSDIEGLFLDMSQLKFDASPNVFDKMCNLRLLKFYFSELIENHGVSLPQGLEYLPTKLRLLHWEYYPISSLPQCFDPKNLIELNMPNSCVKKLWKGKKSLENLKKMRLSYSSQLTKLPRLTSAQNLELLDLEGCKSLESISHSICYLKKLVSLNLKDCSNLESVPSTSDLESLEVLNLSGCSKLENFPEISPNVKELYLGGTMIREIPSSIKNLVLLEKLDLENSRHLVILPTSMCKLKHLETLNLSGCSSLEYFPDFSRKMKCLKSLDLSRTAIRELPSSISYLIALEEVRFVGCKSLVRLPDNAWSLRFKVEFRQIDTEKFSKLWNRLDWLKKVH |
| Gene3D: G3DSA:3.80.10.10 | 620-921 | G3DSA:3.80.10.10 | LDMSQLKFDASPNVFDKMCNLRLLKFYFSELIENHGVSLPQGLEYLPTKLRLLHWEYYPISSLPQCFDPKNLIELNMPNSCVKKLWKGKKSLENLKKMRLSYSSQLTKLPRLTSAQNLELLDLEGCKSLESISHSICYLKKLVSLNLKDCSNLESVPSTSDLESLEVLNLSGCSKLENFPEISPNVKELYLGGTMIREIPSSIKNLVLLEKLDLENSRHLVILPTSMCKLKHLETLNLSGCSSLEYFPDFSRKMKCLKSLDLSRTAIRELPSSISYLIALEEVRFVGCKSLVRLPDNAWSLR |
| HMMPfam: PF07725 IPR011713
|
690-709 | LRR_3 Leucine-rich repeat 3
|
NLIELNMPNSCVKKLWKGKK |
| FPrintScan: PR00364 IPR000767
|
779-795 | DISEASERSIST Disease resistance protein
|
SDLESLEVLNLSGCSKL |
| HMMPfam: PF00560 IPR001611
|
783-800 | LRR_1 Leucine-rich repeat
|
SLEVLNLSGCSKLENFPE |
| HMMPfam: PF13855 | 803-860 | LRR_8,Leucine rich repeat | PNVKELYLGGTMIREIPSSIKNLVLLEKLDLENSRHLVILPTSMCKLKHLETLNLSGC |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
