PRGDB00061509 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438242 (FJ842830) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGCTTCATCATCTCGCAGCCGGAGCTTACAGGTGTTCCCAAGCTTCAGGGGGAAAGATGTTCGGCAAACATTCCTCAGCCACCTTATCGTTGCTCTGGATCGCAAACTAGTCTGTACCGTATTCAAAGACAGTCAAATCGAGCGCGGCCACTCGATCAGCCCAGCTCTTGTGCAGGCGATCAGAGACTCCAGGGTTTCCATCGTAGTGCTCTCCAAGAACTACGCTTCCTCCAGCTGGTGTTTAGACGAGTTGCTGGAGATCTTGAAGTGCAGAGAAGAGTTAGGCCAGATTGTTATGACGATCTTCTACGATTTGGATCCTTCTGACGTTAGGTATCAGATCGGAGAATTCGGCAAGGCCTTTGAGAAAACTTGCGAGAAGAAAACAGCAGATGTGACGAAACAATGGGGACTTGCTTTAACGGAAGTAGCAAACATCCACGGACATCATTCTCGTAAATGGGACAGTGAAGCACACATGGTAGATGATTTTGTCAATGATGTTTCATGTAAGCTGAATTGCTCACAATCATCATCAGAAGAGTTTGATGATTTGATTGGGATCGAAGCTCATATAGCAAACATGGTTTCACTGTTGTCTATGGATGCTGAACAAGTGTTGATGGTAGGGATTTGGGGTCCTTCGGGAATTGGTAAGAGTACCATCGCGAGAGCTTTATTTGGTAGACTCTCTTACCGATTCCAAAGGTGTGTCTTCATCGATAGATCCTTCATCGACAAGACTCTAGAAAATTTCAGAAGAATCAACTTGGATGATTACGGCGTAAAGCTGCAACTGCAAGAAAAATTTCTGTCTGAGATTTTAGACCACAAGGATGTGAAGATTGATCATCTAGGTGTGTTAGGAGGAAGGCTACAGAACCATAAAGTTCTTATAGTTCTCGACGATGTGGATGATCGATTGCTTCTAGATGCCTTAGTTGGACAAACTCTTTGGTTTGGTTCCGGTAGCAGAATCATTGTGGTAACCAAGGATGTACACTTGTTAAGAAGCCACGGTATCGAACGTGTTTACGAGGTGGGTTTTCCTTCCGAAGATCAAGCTCTCGAGATGTTCTGCCAATCCGCTTTTAAACGAAACTCTCCAGCTGATGGTTTCATGGATCTTGCCGTCGAAGTTTCGAAACTCGCTGGTAATCTTCCTTTGGGTCTTAACCTTTTGGGTTCTTCTCTGCGAGGGAGGAACAAGGAGGATTGGATCGACATGCTACCTGAGCTCAGGACTTGTCTGAATGGAGACATCGAGAGAACGTTGAGGTTCGGTTATGATCGGTTAAAGGAGACACATAAAAGGCTATTTCTTCACATAGCGTGTTTGTTCAACGGTGAAAAAGTTGATAGCTTAAAATGGTTGCTTGCTGATAGTGACGTTGATGTTAACACTGGTCTTAGAGTTTTAGTTGAGAGGTCGCTTATACGTATAACAACACACTTGTGTAAAACTGTGGAGATGCATAATTTGCTGCAAGAAATGGGTAGAGGAATGGTATCTGCACAGTCCTTTGACGAGCCTGGAGAACGTCAATTTCTGACTGATTCCAAGAATATATGTGATGTACTTGAGGATAACAGTGGCACTAAAGCTGTTTTAGGTATATCGTGGAACATATCAGAAATTGCTGAGTTGTTCACGTTGGATGAGGATGCATTCAAAGGGATGAGGAATCTCCGGTTTCTTAAGATTTACAAGAACCCGTTGGAGCGTAATGAAGAAACAAAGTTGTACTTGCCCCAAGGCATACAATCTTTGTCTCGTCGACTTAGATTGTTACACTGGGATGCATATCCAATGTCACGTATGCCTTCAGACTTTTCACCAGCCTATCTCGTTGAACTTGGTATGATAGATAGCGAGCTCGAGAAGATGTGGGAAGGGCCCCAACCACTTAAATATCTTAAGAATATGAGCTTGTGGAGATCAAAAAAACTGAAAGAAGTCCCAGATCTTTCGAAAGCTCCCAATCTCGAGGAACTGTATCTAGCTGATTGCCAGAGTCTAGAGATGCTTCCTTCTTCTATTCGGTATCTCAAGAACCTCAAGACTTTGAACATGGAAGAATGCAGTAAGCTGGAGTTTCTTCCGACAAACATCAACTTGGAATCTCTCTCTAACCTGACTCTCTATGGATGCTCACTGATAAGAAGCTTTCCCGACATTTCGCACAACATTTCAGTTCTCTCTCTAGAGAACACGGCGATCGAAGAAGTTCCTTGGTGGATTGAGAAGATGACTGGTCTTACCGGCCTGTTCATGAGTGGCTGCGGCAAGTTAAGCCGTATCTCGCCGAATATATCTAAACTCAAACATCTTGAGGATGTAGATTTCTCCTTGTGCTATGCATTAACTGAAGATAGCTGGCAAGACGATCCTCAGGTGGTGCCTGCTCCTAATCCTATTGGAGATTTAGACATGTCTGATAACACTTTCACTAGACTTCCACACTCATTGGTTTCCATTAAACCCCAAGAGCTTAACATAGGCAACTGCAGAAAGCTCGTGTCGCTGCCTGAGCTACAGACGTCGTCGCTCAAAATACTACGCGCACAAGATTGCGAATCACTTGAGAGTATATCTCACCTCTTTCGAAACCCGGAAACCATTCTTCATTTCATTAACTGCTTCAAACTTGAACAAGAGTGCCTCATACGAAGTTCAGTTTTCAAGTACATGATCCTACCTGGTAGACAAGTGCCCCCGGAGTATTTTACTCATCGAGCTAGTGGAAGTTACTTGACGATCCCTTTACTTGAGAGCTTTCTCCATGGATCTTTTCTGCGGTTTAAGGCTTGTCTCTTGATTGACACCGACTCTACTAAGCCCACTTGGGTCAAAAGCATTATCCGGGTGTGTTGTCTCCTCAAAGGCAACCAAGGGAACCACTTTCACTCTAGTGATCTTCATATTCTCATCTTCGTTACACGTCTGTTGGACCGTCATCTAGCTATATTTGACTGTTCTTTCCCTTTAGACAATCCTCTAGCCAAATCGAACTATGACGCGGTGGAAATAAAGTTTGGATGGGATGCTTGCGAAATTAAAGAATGCGGTATACAATTCTTCTCTCCGTCCTCGGATAGTCAGCCTGGTGATGCAAATAAGCTATCTGAAGAGAACAGTGTAGACTGCTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MASSSRSRSLQVFPSFRGKDVRQTFLSHLIVALDRKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVANIHGHHSRKWDSEAHMVDDFVNDVSCKLNCSQSSSEEFDDLIGIEAHIANMVSLLSMDAEQVLMVGIWGPSGIGKSTIARALFGRLSYRFQRCVFIDRSFIDKTLENFRRINLDDYGVKLQLQEKFLSEILDHKDVKIDHLGVLGGRLQNHKVLIVLDDVDDRLLLDALVGQTLWFGSGSRIIVVTKDVHLLRSHGIERVYEVGFPSEDQALEMFCQSAFKRNSPADGFMDLAVEVSKLAGNLPLGLNLLGSSLRGRNKEDWIDMLPELRTCLNGDIERTLRFGYDRLKETHKRLFLHIACLFNGEKVDSLKWLLADSDVDVNTGLRVLVERSLIRITTHLCKTVEMHNLLQEMGRGMVSAQSFDEPGERQFLTDSKNICDVLEDNSGTKAVLGISWNISEIAELFTLDEDAFKGMRNLRFLKIYKNPLERNEETKLYLPQGIQSLSRRLRLLHWDAYPMSRMPSDFSPAYLVELGMIDSELEKMWEGPQPLKYLKNMSLWRSKKLKEVPDLSKAPNLEELYLADCQSLEMLPSSIRYLKNLKTLNMEECSKLEFLPTNINLESLSNLTLYGCSLIRSFPDISHNISVLSLENTAIEEVPWWIEKMTGLTGLFMSGCGKLSRISPNISKLKHLEDVDFSLCYALTEDSWQDDPQVVPAPNPIGDLDMSDNTFTRLPHSLVSIKPQELNIGNCRKLVSLPELQTSSLKILRAQDCESLESISHLFRNPETILHFINCFKLEQECLIRSSVFKYMILPGRQVPPEYFTHRASGSYLTIPLLESFLHGSFLRFKACLLIDTDSTKPTWVKSIIRVCCLLKGNQGNHFHSSDLHILIFVTRLLDRHLAIFDCSFPLDNPLAKSNYDAVEIKFGWDACEIKECGIQFFSPSSDSQPGDANKLSEENSVDC |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
2-150 | TIR Toll-Interleukin receptor
|
ASSSRSRSLQVFPSFRGKDVRQTFLSHLIVALDRKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVANIHGH |
| ProfileScan: PS50104 IPR000157
|
8-147 | TIR Toll-Interleukin receptor
|
RSLQVFPSFRGKDVRQTFLSHLIVALDRKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVANI |
| HMMSmart: SM00255 IPR000157
|
9-147 | TIR Toll-Interleukin receptor
|
SLQVFPSFRGKDVRQTFLSHLIVALDRKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVANI |
| Gene3D: G3DSA:3.40.50.10140 | 11-145 | G3DSA:3.40.50.10140 | QVFPSFRGKDVRQTFLSHLIVALDRKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVA |
| HMMPfam: PF01582 IPR000157
|
12-138 | TIR Toll-Interleukin receptor
|
VFPSFRGKDVRQTFLSHLIVALDRKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWG |
| HMMPanther: PTHR11017 | 35-1048 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | RKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVANIHGHHSRKWDSEAHMVDDFVNDVSCKLNCSQSSSEEFDDLIGIEAHIANMVSLLSMDAEQVLMVGIWGPSGIGKSTIARALFGRLSYRFQRCVFIDRSFIDKTLENFRRINLDDYGVKLQLQEKFLSEILDHKDVKIDHLGVLGGRLQNHKVLIVLDDVDDRLLLDALVGQTLWFGSGSRIIVVTKDVHLLRSHGIERVYEVGFPSEDQALEMFCQSAFKRNSPADGFMDLAVEVSKLAGNLPLGLNLLGSSLRGRNKEDWIDMLPELRTCLNGDIERTLRFGYDRLKETHKRLFLHIACLFNGEKVDSLKWLLADSDVDVNTGLRVLVERSLIRITTHLCKTVEMHNLLQEMGRGMVSAQSFDEPGERQFLTDSKNICDVLEDNSGTKAVLGISWNISEIAELFTLDEDAFKGMRNLRFLKIYKNPLERNEETKLYLPQGIQSLSRRLRLLHWDAYPMSRMPSDFSPAYLVELGMIDSELEKMWEGPQPLKYLKNMSLWRSKKLKEVPDLSKAPNLEELYLADCQSLEMLPSSIRYLKNLKTLNMEECSKLEFLPTNINLESLSNLTLYGCSLIRSFPDISHNISVLSLENTAIEEVPWWIEKMTGLTGLFMSGCGKLSRISPNISKLKHLEDVDFSLCYALTEDSWQDDPQVVPAPNPIGDLDMSDNTFTRLPHSLVSIKPQELNIGNCRKLVSLPELQTSSLKILRAQDCESLESISHLFRNPETILHFINCFKLEQECLIRSSVFKYMILPGRQVPPEYFTHRASGSYLTIPLLESFLHGSFLRFKACLLIDTDSTKPTWVKSIIRVCCLLKGNQGNHFHSSDLHILIFVTRLLDRHLAIFDCSFPLDNPLAKSNYDAVEIKFGWDACEIKECGIQFFSPSSDSQPGDANKLSEENSV |
| HMMPanther: PTHR11017:SF20 | 35-1048 | PTHR11017:SF20,SUBFAMILY NOT NAMED | RKLVCTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVANIHGHHSRKWDSEAHMVDDFVNDVSCKLNCSQSSSEEFDDLIGIEAHIANMVSLLSMDAEQVLMVGIWGPSGIGKSTIARALFGRLSYRFQRCVFIDRSFIDKTLENFRRINLDDYGVKLQLQEKFLSEILDHKDVKIDHLGVLGGRLQNHKVLIVLDDVDDRLLLDALVGQTLWFGSGSRIIVVTKDVHLLRSHGIERVYEVGFPSEDQALEMFCQSAFKRNSPADGFMDLAVEVSKLAGNLPLGLNLLGSSLRGRNKEDWIDMLPELRTCLNGDIERTLRFGYDRLKETHKRLFLHIACLFNGEKVDSLKWLLADSDVDVNTGLRVLVERSLIRITTHLCKTVEMHNLLQEMGRGMVSAQSFDEPGERQFLTDSKNICDVLEDNSGTKAVLGISWNISEIAELFTLDEDAFKGMRNLRFLKIYKNPLERNEETKLYLPQGIQSLSRRLRLLHWDAYPMSRMPSDFSPAYLVELGMIDSELEKMWEGPQPLKYLKNMSLWRSKKLKEVPDLSKAPNLEELYLADCQSLEMLPSSIRYLKNLKTLNMEECSKLEFLPTNINLESLSNLTLYGCSLIRSFPDISHNISVLSLENTAIEEVPWWIEKMTGLTGLFMSGCGKLSRISPNISKLKHLEDVDFSLCYALTEDSWQDDPQVVPAPNPIGDLDMSDNTFTRLPHSLVSIKPQELNIGNCRKLVSLPELQTSSLKILRAQDCESLESISHLFRNPETILHFINCFKLEQECLIRSSVFKYMILPGRQVPPEYFTHRASGSYLTIPLLESFLHGSFLRFKACLLIDTDSTKPTWVKSIIRVCCLLKGNQGNHFHSSDLHILIFVTRLLDRHLAIFDCSFPLDNPLAKSNYDAVEIKFGWDACEIKECGIQFFSPSSDSQPGDANKLSEENSV |
| superfamily: SSF52540 | 64-442 | SSF52540 | SRVSIVVLSKNYASSSWCLDELLEILKCREELGQIVMTIFYDLDPSDVRYQIGEFGKAFEKTCEKKTADVTKQWGLALTEVANIHGHHSRKWDSEAHMVDDFVNDVSCKLNCSQSSSEEFDDLIGIEAHIANMVSLLSMDAEQVLMVGIWGPSGIGKSTIARALFGRLSYRFQRCVFIDRSFIDKTLENFRRINLDDYGVKLQLQEKFLSEILDHKDVKIDHLGVLGGRLQNHKVLIVLDDVDDRLLLDALVGQTLWFGSGSRIIVVTKDVHLLRSHGIERVYEVGFPSEDQALEMFCQSAFKRNSPADGFMDLAVEVSKLAGNLPLGLNLLGSSLRGRNKEDWIDMLPELRTCLNGDIERTLRFGYDRLKETHKRLFL |
| HMMPfam: PF00931 IPR002182
|
190-453 | NB-ARC,NBS NB-ARC
|
EAHIANMVSLLSMDAEQVLMVGIWGPSGIGKSTIARALFGRLSYRFQRCVFIDRSFIDKTLENFRRINLDDYGVKLQLQEKFLSEILDHKDVKIDHLGVLGGRLQNHKVLIVLDDVDDRLLLDALVGQTLWFGSGSRIIVVTKDVHLLRSHGIERVYEVGFPSEDQALEMFCQSAFKRNSPADGFMDLAVEVSKLAGNLPLGLNLLGSSLRGRNKEDWIDMLPELRTCLNGDIERTLRFGYDRLKETHKRLFLHIACLFNGEKV |
| HMMSmart: SM00382 IPR003593
|
206-340 | AAA,NBS ATPase, AAA+ type, core
|
QVLMVGIWGPSGIGKSTIARALFGRLSYRFQRCVFIDRSFIDKTLENFRRINLDDYGVKLQLQEKFLSEILDHKDVKIDHLGVLGGRLQNHKVLIVLDDVDDRLLLDALVGQTLWFGSGSRIIVVTKDVHLLRSH |
| FPrintScan: PR00364 IPR000767
|
209-224 | DISEASERSIST Disease resistance protein
|
MVGIWGPSGIGKSTIA |
| Gene3D: G3DSA:3.40.50.300 | 209-245 | G3DSA:3.40.50.300 | MVGIWGPSGIGKSTIARALFGRLSYRFQRCVFIDRSF |
| FPrintScan: PR00364 IPR000767
|
292-306 | DISEASERSIST Disease resistance protein
|
RLQNHKVLIVLDDVD |
| FPrintScan: PR00364 IPR000767
|
385-399 | DISEASERSIST Disease resistance protein
|
AGNLPLGLNLLGSSL |
| superfamily: SSF52058 | 503-902 | SSF52058,LRR | MVSAQSFDEPGERQFLTDSKNICDVLEDNSGTKAVLGISWNISEIAELFTLDEDAFKGMRNLRFLKIYKNPLERNEETKLYLPQGIQSLSRRLRLLHWDAYPMSRMPSDFSPAYLVELGMIDSELEKMWEGPQPLKYLKNMSLWRSKKLKEVPDLSKAPNLEELYLADCQSLEMLPSSIRYLKNLKTLNMEECSKLEFLPTNINLESLSNLTLYGCSLIRSFPDISHNISVLSLENTAIEEVPWWIEKMTGLTGLFMSGCGKLSRISPNISKLKHLEDVDFSLCYALTEDSWQDDPQVVPAPNPIGDLDMSDNTFTRLPHSLVSIKPQELNIGNCRKLVSLPELQTSSLKILRAQDCESLESISHLFRNPETILHFINCFKLEQECLIRSSVFKYMILPG |
| Gene3D: G3DSA:3.80.10.10 | 552-868 | G3DSA:3.80.10.10 | TLDEDAFKGMRNLRFLKIYKNPLERNEETKLYLPQGIQSLSRRLRLLHWDAYPMSRMPSDFSPAYLVELGMIDSELEKMWEGPQPLKYLKNMSLWRSKKLKEVPDLSKAPNLEELYLADCQSLEMLPSSIRYLKNLKTLNMEECSKLEFLPTNINLESLSNLTLYGCSLIRSFPDISHNISVLSLENTAIEEVPWWIEKMTGLTGLFMSGCGKLSRISPNISKLKHLEDVDFSLCYALTEDSWQDDPQVVPAPNPIGDLDMSDNTFTRLPHSLVSIKPQELNIGNCRKLVSLPELQTSSLKILRAQDCESLESISHL |
| HMMPfam: PF13504 | 661-678 | LRR_7,Leucine rich repeat | PNLEELYLADCQSLEMLP |
| FPrintScan: PR00364 IPR000767
|
682-698 | DISEASERSIST Disease resistance protein
|
RYLKNLKTLNMEECSKL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
