PRGDB00061510 (disease resistance protein)
disease resistance protein | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 227438240 (FJ842829) |
Gene Class | TNL |
Domain Type | NBS, TIR, LRR, Others |
Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGATCCTAATTCTTCTCTATCTCGCGGATATATGCATGATGTCTTCCCCAGTTTCTGCGGTCAAGACGTTCGCAAAACCTTTCTCAGCCACTTTCTTGAAGGGCTGAAAAGAGAAGGAATAAACACCTTCATAGACAATGGGATCACGAGGAGCGAGTCTATTAACTCCGAGCTCGTTAGAGCTATCAAGGAAGCAAGGATTGCTATCGTTATTCTCTCAAATAACTACGACTCTTCAAGTTGGTGTCTTAACGAATTGCAGTTGATCATGGAGTGCAGGTTAGCTTTAGGACAGACTGTTATGACAATCTTCTACGAAGTGGATCCGTCAGATGTAAGAAAACAGACCGGAGATTTCGGGAAGGCCTTTGAAGAAACTTGTGATGGGAAGACAGAGGAAGAAAAACATAGATGGAGACAAGCTTTGACTCAAGTTGCGGTTATTGCCGGAGAACATTCTGTTTCATGGGCTAGTGAAGCTGAGATGATGTTGAAAATTGTCATGGATGTTTCTAACGAGTTGCCATCAACTGATTTTGATCGGTTAGTTGGAATAGAAGCTCATGTAGCAAAGGTGAAAGCGATGATGTGCCTAGAGTCCGATGAGGTGAAGGTTGTGGGGATATGGGGACCTGCTGGTATTGGCAAAACCACTATCGCTAGGGCCTTATACAAAGAAGTGTCGTGTAACTTCCAGCTCAAGTATTATAAGGAGAATGTTGAGGGGAAGTATAAGACGATCCAATTTGACAAGCATTACTTGCAAAACTATTTGGAAAACGAGATAAACTCTGGAGTTTTCGATCACAGAGACATGAAGATACCTGACTTACAAGAAGCAAAGTTTAGGCTAAAGCACCAGAGAGTCCTTCTCATTCTTGATGATATTGGTTGTGATGAGCTAAAAGCTTTGGGGAATCTAATTCAGGGTCTGAGGTTTGGAAGTAAGGTGATAGTGACGAGTGAAGATGTATATAAACTGAAAACTAATGGGATCAATCAGGTATACAAAGTTGTTTTCCCATCAAAGGAAGAGGCGTTGCAAATCTTCTCGTACTCTGCGTTTGGACAAAAGTGTCCACCAAGAAGTTACGTGGAGAAAGCTGTTGAAGTAACTAAGTTTGTTGCTCCGTTTCCACTTGGTCTCAAAGTCTTAGGTTCGTCTTTTCGTGGGAAGACCAAAGATGAGTGGATGGTAAAAGTGCCTAAACTCAGAACCTATCTTGAGAATAATAAGGATATAGAGAAAGTGATTAGATATGCGTTCGATGGTCTATCTGATACACAACGAAATACACTTCATGGGTTAGTTAGCTCTATGCGTTGTGGTAAGGACGTGAACAACAACACATTCACGTTTCTGGAGAGTGTCTGGGACGTGGATGAAGATATGCAAACCCTAGCTGATATGGCTCTCATCTCCAGATCCGGGCATGGAGGAATCATGGTGCACTATTTGGTACGTCATATGGTAAACAAGACTGGCCCTGGATCTCGAATGAGTTATATTGAAACTTTTTTTACACAGTAA
Protein sequences
Name | Description | Sequence |
---|---|---|
disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MDPNSSLSRGYMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLHGLVSSMRCGKDVNNNTFTFLESVWDVDEDMQTLADMALISRSGHGGIMVHYLVRHMVNKTGPGSRMSYIETFFTQ |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52200 IPR000157
|
1-152 | TIR Toll-Interleukin receptor
|
MDPNSSLSRGYMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGE |
Gene3D: G3DSA:3.40.50.10140 | 9-147 | G3DSA:3.40.50.10140 | RGYMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVA |
ProfileScan: PS50104 IPR000157
|
11-149 | TIR Toll-Interleukin receptor
|
YMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVI |
HMMSmart: SM00255 IPR000157
|
12-149 | TIR Toll-Interleukin receptor
|
MHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVI |
HMMPfam: PF01582 IPR000157
|
15-144 | TIR Toll-Interleukin receptor
|
VFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALT |
HMMPanther: PTHR11017:SF20 | 32-491 | PTHR11017:SF20,SUBFAMILY NOT NAMED | FLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLHGLVSSMRCGKDVNNNTFTFLESVWDVDEDMQTLADMALISRSGHGGIMVHYLVRHM |
HMMPanther: PTHR11017 | 32-491 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLHGLVSSMRCGKDVNNNTFTFLESVWDVDEDMQTLADMALISRSGHGGIMVHYLVRHM |
superfamily: SSF52540 | 66-435 | SSF52540 | ARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLH |
Gene3D: G3DSA:3.40.50.300 | 171-339 | G3DSA:3.40.50.300 | VSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKV |
HMMPfam: PF00931 IPR002182
|
187-429 | NB-ARC,NBS NB-ARC
|
EAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDT |
FPrintScan: PR00364 IPR000767
|
206-221 | DISEASERSIST Disease resistance protein
|
VVGIWGPAGIGKTTIA |
FPrintScan: PR00364 IPR000767
|
284-298 | DISEASERSIST Disease resistance protein
|
RLKHQRVLLILDDIG |
FPrintScan: PR00364 IPR000767
|
376-390 | DISEASERSIST Disease resistance protein
|
VAPFPLGLKVLGSSF |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.