PRGDB00061510 (disease resistance protein)

disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	227438240 (FJ842829)
Gene Class	TNL
Domain Type	NBS, TIR, LRR, Others
Gene Species	Brassica rapa subsp. pekinensis
	Comment?

Brassica rapa subsp. pekinensis isolate BrTN1 disease resistance protein gene, complete cds.

DNA Sequence

ATGGATCCTAATTCTTCTCTATCTCGCGGATATATGCATGATGTCTTCCCCAGTTTCTGCGGTCAAGACGTTCGCAAAACCTTTCTCAGCCACTTTCTTGAAGGGCTGAAAAGAGAAGGAATAAACACCTTCATAGACAATGGGATCACGAGGAGCGAGTCTATTAACTCCGAGCTCGTTAGAGCTATCAAGGAAGCAAGGATTGCTATCGTTATTCTCTCAAATAACTACGACTCTTCAAGTTGGTGTCTTAACGAATTGCAGTTGATCATGGAGTGCAGGTTAGCTTTAGGACAGACTGTTATGACAATCTTCTACGAAGTGGATCCGTCAGATGTAAGAAAACAGACCGGAGATTTCGGGAAGGCCTTTGAAGAAACTTGTGATGGGAAGACAGAGGAAGAAAAACATAGATGGAGACAAGCTTTGACTCAAGTTGCGGTTATTGCCGGAGAACATTCTGTTTCATGGGCTAGTGAAGCTGAGATGATGTTGAAAATTGTCATGGATGTTTCTAACGAGTTGCCATCAACTGATTTTGATCGGTTAGTTGGAATAGAAGCTCATGTAGCAAAGGTGAAAGCGATGATGTGCCTAGAGTCCGATGAGGTGAAGGTTGTGGGGATATGGGGACCTGCTGGTATTGGCAAAACCACTATCGCTAGGGCCTTATACAAAGAAGTGTCGTGTAACTTCCAGCTCAAGTATTATAAGGAGAATGTTGAGGGGAAGTATAAGACGATCCAATTTGACAAGCATTACTTGCAAAACTATTTGGAAAACGAGATAAACTCTGGAGTTTTCGATCACAGAGACATGAAGATACCTGACTTACAAGAAGCAAAGTTTAGGCTAAAGCACCAGAGAGTCCTTCTCATTCTTGATGATATTGGTTGTGATGAGCTAAAAGCTTTGGGGAATCTAATTCAGGGTCTGAGGTTTGGAAGTAAGGTGATAGTGACGAGTGAAGATGTATATAAACTGAAAACTAATGGGATCAATCAGGTATACAAAGTTGTTTTCCCATCAAAGGAAGAGGCGTTGCAAATCTTCTCGTACTCTGCGTTTGGACAAAAGTGTCCACCAAGAAGTTACGTGGAGAAAGCTGTTGAAGTAACTAAGTTTGTTGCTCCGTTTCCACTTGGTCTCAAAGTCTTAGGTTCGTCTTTTCGTGGGAAGACCAAAGATGAGTGGATGGTAAAAGTGCCTAAACTCAGAACCTATCTTGAGAATAATAAGGATATAGAGAAAGTGATTAGATATGCGTTCGATGGTCTATCTGATACACAACGAAATACACTTCATGGGTTAGTTAGCTCTATGCGTTGTGGTAAGGACGTGAACAACAACACATTCACGTTTCTGGAGAGTGTCTGGGACGTGGATGAAGATATGCAAACCCTAGCTGATATGGCTCTCATCTCCAGATCCGGGCATGGAGGAATCATGGTGCACTATTTGGTACGTCATATGGTAAACAAGACTGGCCCTGGATCTCGAATGAGTTATATTGAAACTTTTTTTACACAGTAA

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Brassica rapa subsp. pekinensis].	MDPNSSLSRGYMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLHGLVSSMRCGKDVNNNTFTFLESVWDVDEDMQTLADMALISRSGHGGIMVHYLVRHMVNKTGPGSRMSYIETFFTQ

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52200 IPR000157	1-152	TIR Toll-Interleukin receptor	MDPNSSLSRGYMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGE
Gene3D: G3DSA:3.40.50.10140	9-147	G3DSA:3.40.50.10140	RGYMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVA
ProfileScan: PS50104 IPR000157	11-149	TIR Toll-Interleukin receptor	YMHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVI
HMMSmart: SM00255 IPR000157	12-149	TIR Toll-Interleukin receptor	MHDVFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVI
HMMPfam: PF01582 IPR000157	15-144	TIR Toll-Interleukin receptor	VFPSFCGQDVRKTFLSHFLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALT
HMMPanther: PTHR11017:SF20	32-491	PTHR11017:SF20,SUBFAMILY NOT NAMED	FLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLHGLVSSMRCGKDVNNNTFTFLESVWDVDEDMQTLADMALISRSGHGGIMVHYLVRHM
HMMPanther: PTHR11017	32-491	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	FLEGLKREGINTFIDNGITRSESINSELVRAIKEARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLHGLVSSMRCGKDVNNNTFTFLESVWDVDEDMQTLADMALISRSGHGGIMVHYLVRHM
superfamily: SSF52540	66-435	SSF52540	ARIAIVILSNNYDSSSWCLNELQLIMECRLALGQTVMTIFYEVDPSDVRKQTGDFGKAFEETCDGKTEEEKHRWRQALTQVAVIAGEHSVSWASEAEMMLKIVMDVSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDTQRNTLH
Gene3D: G3DSA:3.40.50.300	171-339	G3DSA:3.40.50.300	VSNELPSTDFDRLVGIEAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKV
HMMPfam: PF00931 IPR002182	187-429	NB-ARC,NBS NB-ARC	EAHVAKVKAMMCLESDEVKVVGIWGPAGIGKTTIARALYKEVSCNFQLKYYKENVEGKYKTIQFDKHYLQNYLENEINSGVFDHRDMKIPDLQEAKFRLKHQRVLLILDDIGCDELKALGNLIQGLRFGSKVIVTSEDVYKLKTNGINQVYKVVFPSKEEALQIFSYSAFGQKCPPRSYVEKAVEVTKFVAPFPLGLKVLGSSFRGKTKDEWMVKVPKLRTYLENNKDIEKVIRYAFDGLSDT
FPrintScan: PR00364 IPR000767	206-221	DISEASERSIST Disease resistance protein	VVGIWGPAGIGKTTIA
FPrintScan: PR00364 IPR000767	284-298	DISEASERSIST Disease resistance protein	RLKHQRVLLILDDIG
FPrintScan: PR00364 IPR000767	376-390	DISEASERSIST Disease resistance protein	VAPFPLGLKVLGSSF

List of References

Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show