PRGDB00061513 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438234 (FJ842826) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGTGGTGTCTTCCTCCTCCGTACAATCATCACCCCCGCAGCATCAAGTCTTCATCAATTTCCGAGGGAAGCAGCTGCGGAACGGTTTCGTAAGCCACCTGGAGAAGGCCCTGAGAAAAGATGGAATCAATGTTTTTATCGACAAAAACGAAACCAAAGGTAAAGATCTCAGCATTCTCTTTTCGAGGATCGAAGAGTCCAGGATCGCGCTGGCCATCTTCTCAACGCTCTATACGGAGTCGAACTGGTGCTTGAACGAGCTGGAGAAGATCAAGGAGTGCGTTGACTTGGGGAAGCTTGTGGTCATCCCCATCTTCTACAAGGTGGAGACTGACGATGTGAAGAATCTCAAGGGAGTGTTTGGTGACAAGTTTTGGGAGTTGGCTAAGACTTGTAGAGGTGAAAAGCTTGATAAGTGGAAAGAAGCTTTAGAGGATGTCCCCAAAAAGTTAGGATTCACTTTAAGTGAAATGAGTGATGAAGGTGAATACATTAGTAAAATTGTAGGTCAAGTGATGAAAGTGCTCTCTGATGTTTCGGCTGGTCTTGAAAGAGATGTCCCCATTGAAGATCCTTCTGAAGCTGATCCTGACTCATCTCCTCTTTATGGAATCGAAACACGACTTAAGCAGCTGGAAGAGAAGTTAGAGTTCGATTGCGAGAGTACACTCACGGTTGGTGTTGTTGGGATGCCGGGGATTGGTAAGACAACTTTGACGAAGATGCTGTACGAAAAGTGGCAACACAAGTTCCTGCGCTGTGTTTTCCTTCACGATGTCCGTAAACTGTGGCAAGACCGCATGATGGATCGGAACATTTTCATGAGAGAGTTGTTGAAGGATGATGACTTGAGCCAACAAGTCGCTGCTGACCTGTCGCCTGAATCCTTGAAGGCACTTTTACTCAGTAAGAAATCTCTTGTTGTTCTCGATAACGTAACCGACAAGAAACAGATTGAAGTTCTTCTTGGCGAATGCGATTGGATTAAAAAAGGTAGCTTGATTTTTATCACGACCAGCGACAAGTCGGTGATCGAAGGGAAGGTTGATGATACATATGAGGTTCTGAGGTTGAGTGGGAGAGAAAGCTTTCAGTACTTCAGCTATTTCGCTTTTGGTGGTGGTAAGCACTACTATACTCCCAAGGGAAATTTCATGAACCTTTCTAGATTGTTTGCGGATTACGCCAAGGGCAACCCGTTAGCTCTCAAGATATTAGGTGTTGAGCTTAACGGAAAAGACGAGACTCACTGGGAAGATAAACTCTCCAAGCTGGCACAAAGTCCGGACAAGACTATACAAAATGTGTTGCAGATAAGCTATGATGGACTTAGTGAGCTTCATAAAAATGTCTTTCTAGATGTAGCCTGTTTCTTTAGATCAGGGGATGAGTACTACGTGAAGTGTTTAGTGGAGTCTTGTGACAGTGAAATAAAGGATCTTGCCAGCAAATTTTTTATTAACATTTCTGGCGGACGAGTTGAGATGCATGATTTACTGTATACATTCGGCAAGGAACTTGGTTTACAAGGTTCGCGGAGGCTGTGGAACCATAAAGGCGTTGTTGGTGCGCTGAAGAAAAGAGCAGGAGCAGAGAGTGTGAGAGGTATTTTTCTCGACATGTCTGAACTGAAGAAGAAACTTCCTTTGGAAAAATGCACCTTCAGTGGGATGCGTAATCTTAGGTACCTTAAATTCTATAATTCTTGTTGCCATCGTGAATGTGAAGCTGACTGCAAACTAAGCTTCCCTGAGGGACTTGAGTTTCCCTTGGATGAAGTACGGTATCTCTACTGGCTGAAATTCCCTTTGAAGAAACTTCCAAAAGACTTCAACCCCAAGAATCTTACGGATCTTAGCCTGCCTTACAGCGAGATTGAAGAGATATGGGAGGGTGTTAAGGCTACACCGAAGTTAAAGTGGGTTGATCTAAGCCACTCAAGCAAGTTAAGCAAGTTGTCTGGGTTGCAAAATGCGGAAAGTCTCCAAAGACTGAGTCTCGAAGGCTGCAAGAGTTTACAGGAGTTGCCCCGGGAGATGAACCATATGAAATCTCTTGTTTTCCTCAACATGAGGGGATGCACAAGTCTCCGGTTTCTTCCGCATATGAATCTCATCTCCATGAAAACTCTCATCCTCACCAACTGCTCAAGTCTCCAGGAGTTCCGGGTTATTTCGGATAATCTCGAAACTCTGAAGTTAGATGGAACTGCCATAAGTCAACTTCCTGCAAACATGGTGAAGCTCCAGAGACTGATGGTACTGAACTTGAAAGACTGCATAATGTTGGAGGCTGTTCCAGAATCCCTGGGGAAGCTGAAAAAGCTGCAAGAACTGGTGCTATCTGGTTGTTCGAAGCTCAAGACTTTTCCAATTCCCATTGAAAACATGAAACGCTTGCAGATTTTGTTGCTGGATACGACAGCAATTACAGACATGCCGAAGATATTGCAGTTCAATAGCCAAATAAAATGTGGTATGAACGGTCTATCCTCATTGCGTCATCTATGCTTAAGCAGGAACAATATGATCACCAACCTGCAAGTAAACATCAGTCAACTACATCATCTGAGATTGCTCGACGTGAAGTACTGCAAGAATCTCACATCTATTCCATTGCTTCCACCAAATTTAGAGGTCTTAGATGCACATGGCTGCGAGAAACTGAAAACAGTAGCAACCCCCTTGGCGCTTCTTAAGCTTATGGAGCAGGTTCACTCTAAATTCATTTTCACCAACTGCAACAACCTTGAACAAGTTGCAAAGAACAGCATCACAGTGTATGCTCAAAGGAAAAGCCAGCAAGATGCAGGCAATGTTTCAGAAGCTTTGCTTATCACTTCCTTTCCAGGGAGCGAAGTCCCATCATGGTTCAACCATCGTACAATTGGATCTTCCTTGAAGCTCAAGTTTCCTCCACATTGGTGCGACAACAGGCTTTCAACAATAGTTCTATGCGCTGTTGTCTCATTCCCTTGCACACAAGATGAAATCAACCGTTTTTCAATAGAGTGCACTTGCGAATTCACAAACGAACTTGGGACATGTGTACGTTTCAGCTGCACTCTTGGTGGAGGTTGGATCGAACCGCGCGAGATTGATTCGGACCATGTGTTTATCGGTTACACCAGCTGCTCACACCTAAGAAATCATGTGGAAGGGTCGGGAGAACATCATAAATGTGTTCCTACAGAGGCTTCAATCGAGTTCGAAGTGAGAGATGGAGCAGGGGAGATTGTGAATTGTGGTTTAAGTTTGGTATACGAGGAACCAAACCATGCCGTTACTGAAGGAGACTATAATGGAACTTCTTCAAGAAGAGATTTCTCAGTTGGAGAGAGTATAGTGAGTTTTGCTGTTCGGTTGTATTTTCTTGGTCATCATTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MVVSSSSVQSSPPQHQVFINFRGKQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEALEDVPKKLGFTLSEMSDEGEYISKIVGQVMKVLSDVSAGLERDVPIEDPSEADPDSSPLYGIETRLKQLEEKLEFDCESTLTVGVVGMPGIGKTTLTKMLYEKWQHKFLRCVFLHDVRKLWQDRMMDRNIFMRELLKDDDLSQQVAADLSPESLKALLLSKKSLVVLDNVTDKKQIEVLLGECDWIKKGSLIFITTSDKSVIEGKVDDTYEVLRLSGRESFQYFSYFAFGGGKHYYTPKGNFMNLSRLFADYAKGNPLALKILGVELNGKDETHWEDKLSKLAQSPDKTIQNVLQISYDGLSELHKNVFLDVACFFRSGDEYYVKCLVESCDSEIKDLASKFFINISGGRVEMHDLLYTFGKELGLQGSRRLWNHKGVVGALKKRAGAESVRGIFLDMSELKKKLPLEKCTFSGMRNLRYLKFYNSCCHRECEADCKLSFPEGLEFPLDEVRYLYWLKFPLKKLPKDFNPKNLTDLSLPYSEIEEIWEGVKATPKLKWVDLSHSSKLSKLSGLQNAESLQRLSLEGCKSLQELPREMNHMKSLVFLNMRGCTSLRFLPHMNLISMKTLILTNCSSLQEFRVISDNLETLKLDGTAISQLPANMVKLQRLMVLNLKDCIMLEAVPESLGKLKKLQELVLSGCSKLKTFPIPIENMKRLQILLLDTTAITDMPKILQFNSQIKCGMNGLSSLRHLCLSRNNMITNLQVNISQLHHLRLLDVKYCKNLTSIPLLPPNLEVLDAHGCEKLKTVATPLALLKLMEQVHSKFIFTNCNNLEQVAKNSITVYAQRKSQQDAGNVSEALLITSFPGSEVPSWFNHRTIGSSLKLKFPPHWCDNRLSTIVLCAVVSFPCTQDEINRFSIECTCEFTNELGTCVRFSCTLGGGWIEPREIDSDHVFIGYTSCSHLRNHVEGSGEHHKCVPTEASIEFEVRDGAGEIVNCGLSLVYEEPNHAVTEGDYNGTSSRRDFSVGESIVSFAVRLYFLGHH |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
3-153 | TIR Toll-Interleukin receptor
|
VSSSSVQSSPPQHQVFINFRGKQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEALEDVPKKLGF |
| ProfileScan: PS50104 IPR000157
|
13-150 | TIR Toll-Interleukin receptor
|
PQHQVFINFRGKQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEALEDVPKK |
| Gene3D: G3DSA:3.40.50.10140 | 13-144 | G3DSA:3.40.50.10140 | PQHQVFINFRGKQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEAL |
| HMMSmart: SM00255 IPR000157
|
14-150 | TIR Toll-Interleukin receptor
|
QHQVFINFRGKQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEALEDVPKK |
| HMMPfam: PF01582 IPR000157
|
17-145 | TIR Toll-Interleukin receptor
|
VFINFRGKQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEALE |
| HMMPanther: PTHR23155 | 24-930 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | KQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEALEDVPKKLGFTLSEMSDEGEYISKIVGQVMKVLSDVSAGLERDVPIEDPSEADPDSSPLYGIETRLKQLEEKLEFDCESTLTVGVVGMPGIGKTTLTKMLYEKWQHKFLRCVFLHDVRKLWQDRMMDRNIFMRELLKDDDLSQQVAADLSPESLKALLLSKKSLVVLDNVTDKKQIEVLLGECDWIKKGSLIFITTSDKSVIEGKVDDTYEVLRLSGRESFQYFSYFAFGGGKHYYTPKGNFMNLSRLFADYAKGNPLALKILGVELNGKDETHWEDKLSKLAQSPDKTIQNVLQISYDGLSELHKNVFLDVACFFRSGDEYYVKCLVESCDSEIKDLASKFFINISGGRVEMHDLLYTFGKELGLQGSRRLWNHKGVVGALKKRAGAESVRGIFLDMSELKKKLPLEKCTFSGMRNLRYLKFYNSCCHRECEADCKLSFPEGLEFPLDEVRYLYWLKFPLKKLPKDFNPKNLTDLSLPYSEIEEIWEGVKATPKLKWVDLSHSSKLSKLSGLQNAESLQRLSLEGCKSLQELPREMNHMKSLVFLNMRGCTSLRFLPHMNLISMKTLILTNCSSLQEFRVISDNLETLKLDGTAISQLPANMVKLQRLMVLNLKDCIMLEAVPESLGKLKKLQELVLSGCSKLKTFPIPIENMKRLQILLLDTTAITDMPKILQFNSQIKCGMNGLSSLRHLCLSRNNMITNLQVNISQLHHLRLLDVKYCKNLTSIPLLPPNLEVLDAHGCEKLKTVATPLALLKLMEQVHSKFIFTNCNNLEQVAKNSITVYAQ |
| HMMPanther: PTHR23155:SF66 | 24-930 | PTHR23155:SF66,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) | KQLRNGFVSHLEKALRKDGINVFIDKNETKGKDLSILFSRIEESRIALAIFSTLYTESNWCLNELEKIKECVDLGKLVVIPIFYKVETDDVKNLKGVFGDKFWELAKTCRGEKLDKWKEALEDVPKKLGFTLSEMSDEGEYISKIVGQVMKVLSDVSAGLERDVPIEDPSEADPDSSPLYGIETRLKQLEEKLEFDCESTLTVGVVGMPGIGKTTLTKMLYEKWQHKFLRCVFLHDVRKLWQDRMMDRNIFMRELLKDDDLSQQVAADLSPESLKALLLSKKSLVVLDNVTDKKQIEVLLGECDWIKKGSLIFITTSDKSVIEGKVDDTYEVLRLSGRESFQYFSYFAFGGGKHYYTPKGNFMNLSRLFADYAKGNPLALKILGVELNGKDETHWEDKLSKLAQSPDKTIQNVLQISYDGLSELHKNVFLDVACFFRSGDEYYVKCLVESCDSEIKDLASKFFINISGGRVEMHDLLYTFGKELGLQGSRRLWNHKGVVGALKKRAGAESVRGIFLDMSELKKKLPLEKCTFSGMRNLRYLKFYNSCCHRECEADCKLSFPEGLEFPLDEVRYLYWLKFPLKKLPKDFNPKNLTDLSLPYSEIEEIWEGVKATPKLKWVDLSHSSKLSKLSGLQNAESLQRLSLEGCKSLQELPREMNHMKSLVFLNMRGCTSLRFLPHMNLISMKTLILTNCSSLQEFRVISDNLETLKLDGTAISQLPANMVKLQRLMVLNLKDCIMLEAVPESLGKLKKLQELVLSGCSKLKTFPIPIENMKRLQILLLDTTAITDMPKILQFNSQIKCGMNGLSSLRHLCLSRNNMITNLQVNISQLHHLRLLDVKYCKNLTSIPLLPPNLEVLDAHGCEKLKTVATPLALLKLMEQVHSKFIFTNCNNLEQVAKNSITVYAQ |
| superfamily: SSF52540 | 190-433 | SSF52540 | EDPSEADPDSSPLYGIETRLKQLEEKLEFDCESTLTVGVVGMPGIGKTTLTKMLYEKWQHKFLRCVFLHDVRKLWQDRMMDRNIFMRELLKDDDLSQQVAADLSPESLKALLLSKKSLVVLDNVTDKKQIEVLLGECDWIKKGSLIFITTSDKSVIEGKVDDTYEVLRLSGRESFQYFSYFAFGGGKHYYTPKGNFMNLSRLFADYAKGNPLALKILGVELNGKDETHWEDKLSKLAQSPDKTI |
| Gene3D: G3DSA:3.40.50.300 | 202-350 | G3DSA:3.40.50.300 | LYGIETRLKQLEEKLEFDCESTLTVGVVGMPGIGKTTLTKMLYEKWQHKFLRCVFLHDVRKLWQDRMMDRNIFMRELLKDDDLSQQVAADLSPESLKALLLSKKSLVVLDNVTDKKQIEVLLGECDWIKKGSLIFITTSDKSVIEGKVD |
| HMMPfam: PF00931 IPR002182
|
206-461 | NB-ARC,NBS NB-ARC
|
ETRLKQLEEKLEFDCESTLTVGVVGMPGIGKTTLTKMLYEKWQHKFLRCVFLHDVRKLWQDRMMDRNIFMRELLKDDDLSQQVAADLSPESLKALLLSKKSLVVLDNVTDKKQIEVLLGECDWIKKGSLIFITTSDKSVIEGKVDDTYEVLRLSGRESFQYFSYFAFGGGKHYYTPKGNFMNLSRLFADYAKGNPLALKILGVELNGKDETHWEDKLSKLAQSPDKTIQNVLQISYDGLSELHKNVFLDVACFFRS |
| FPrintScan: PR00364 IPR000767
|
225-240 | DISEASERSIST Disease resistance protein
|
TVGVVGMPGIGKTTLT |
| FPrintScan: PR00364 IPR000767
|
300-314 | DISEASERSIST Disease resistance protein
|
LLLSKKSLVVLDNVT |
| FPrintScan: PR00364 IPR000767
|
396-410 | DISEASERSIST Disease resistance protein
|
AKGNPLALKILGVEL |
| superfamily: SSF46785 | 431-526 | SSF46785 | KTIQNVLQISYDGLSELHKNVFLDVACFFRSGDEYYVKCLVESCDSEIKDLASKFFINISGGRVEMHDLLYTFGKELGLQGSRRLWNHKGVVGALK |
| superfamily: SSF52058 | 495-906 | SSF52058,LRR | EMHDLLYTFGKELGLQGSRRLWNHKGVVGALKKRAGAESVRGIFLDMSELKKKLPLEKCTFSGMRNLRYLKFYNSCCHRECEADCKLSFPEGLEFPLDEVRYLYWLKFPLKKLPKDFNPKNLTDLSLPYSEIEEIWEGVKATPKLKWVDLSHSSKLSKLSGLQNAESLQRLSLEGCKSLQELPREMNHMKSLVFLNMRGCTSLRFLPHMNLISMKTLILTNCSSLQEFRVISDNLETLKLDGTAISQLPANMVKLQRLMVLNLKDCIMLEAVPESLGKLKKLQELVLSGCSKLKTFPIPIENMKRLQILLLDTTAITDMPKILQFNSQIKCGMNGLSSLRHLCLSRNNMITNLQVNISQLHHLRLLDVKYCKNLTSIPLLPPNLEVLDAHGCEKLKTVATPLALLKLMEQVH |
| Gene3D: G3DSA:3.80.10.10 | 551-709 | G3DSA:3.80.10.10 | EKCTFSGMRNLRYLKFYNSCCHRECEADCKLSFPEGLEFPLDEVRYLYWLKFPLKKLPKDFNPKNLTDLSLPYSEIEEIWEGVKATPKLKWVDLSHSSKLSKLSGLQNAESLQRLSLEGCKSLQELPREMNHMKSLVFLNMRGCTSLRFLPHMNLISMK |
| HMMPfam: PF07725 IPR011713
|
615-634 | LRR_3 Leucine-rich repeat 3
|
NLTDLSLPYSEIEEIWEGVK |
| Gene3D: G3DSA:3.80.10.10 | 710-904 | G3DSA:3.80.10.10 | TLILTNCSSLQEFRVISDNLETLKLDGTAISQLPANMVKLQRLMVLNLKDCIMLEAVPESLGKLKKLQELVLSGCSKLKTFPIPIENMKRLQILLLDTTAITDMPKILQFNSQIKCGMNGLSSLRHLCLSRNNMITNLQVNISQLHHLRLLDVKYCKNLTSIPLLPPNLEVLDAHGCEKLKTVATPLALLKLMEQ |
| HMMPfam: PF13855 | 728-784 | LRR_8,Leucine rich repeat | NLETLKLDGTAISQLPANMVKLQRLMVLNLKDCIMLEAVPESLGKLKKLQELVLSGC |
| FPrintScan: PR00364 IPR000767
|
771-787 | DISEASERSIST Disease resistance protein
|
GKLKKLQELVLSGCSKL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
