PRGDB00061518 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438224 (FJ842821) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGCTTCTTCTTCTTCTTCGTCATCATCTCTGGCTCTCATTTGGTTGTATCACGTCTTCCTGAGCTTCCGTGGTGAAGACGTGCGCAAAGGCTTTCTTAGCCACGTTCTGAAAGAGTTCAAAAGCAAGGGAATCAATGTTTTCATTGATAACGAGATCAAGCGAGGCCAATCTGTCGGCCCAGAGCTTGTTAAAGCGATCAGACATTCAAGGGTTGCGGTGGTCTTGCTCTCCCGTAACTACGCTTCTTCAAGCTGGTGTCTGGATGAGTTAGTTGAAATCATGAAGTGCAGGGAAGAGGTTGGTCAAACAGTGTTGACCATTTTCTACAATGTGGATCCATCTGAAGTTAGGAAGCAGACTGGAGATTTCGGAAAAGCCTTTGATGAAACCTGTGTGGGTAAAACAGAAGAGGTGAAGAAGGCATGGAGGCAAGCTTTGAATGATGTCGCTGGTATCGCTGGTTACCACTCTAGCAACTGTGGGAATGAAGCTGATTTGATCAACAAAGTTGCCTCAGATGTCATGGCTGTGTTGGGTTTTACACCATCAAATGACTTTGATGACTTTGTTGGCATGGGAGCTCGTGTCACGGAGATAAAATCGAAGATTATCCTACAATCAGAACTAGTTAAGGTGATCGGGATTTTTGGTCCTGCTGGCATTGGGAAGACGACCACTGCCAGAGTTTTATACAACCAACTCTCTCATGCTTTTCCATTCAGCACGTTTTTGGAGGATATCAGAGGAAGTTATGAGAAGCCTTGTGGTAACGACTATAGGTTGAAGTTGCGTTTGCAGAAAAACTTGTTGTGTCAAATATTCAACCAAAGTGACATTGAGGTTCGTCACTTAAGAGGAGCTCAAGAAATGCTGAGTGACAAAAAGGTGTTGGTTGTTCTTGATGAAGTGGATAACTGGTGGCAGCTAGAGGAAATGGCAAAGCAGCCTGGATGGGTTGGTCCCGGAAGTATGATTATCATTACAACAGAAGATAGAAAACTTCTCAAGGCACTTGGACTCGGGAGCGATCATATCTACAAGATGAATTTTCCAACTGAAGATGAGTCTCTGCAGATCTTCTGCCAATATGCTTTCGGTCAAAAGTCTCCAGATGATGGTTTTGAAAGTCTTGCTAGGGAAGTTACTTGGCTTGTTGGTGATCTTCCTCTAGGCCTGAGAGTTATGGGATCATATCTACGGGGAATGTCCAAGGACGAGTGGATAGAGGCATTACCATGGTTAAGGTCTACCCTTGACAGAGAAATTGAATCAACTCTAAGGTTTAGCTACGACGCCTTGAGAGATAATGAAAAAACTCTTTTTCTGCATGTAGCATGTTTGTTTGGTGGTTTCTACGCTTCTAGCATCAAAAGTTATTTTGCAAACAGTAGTTTGGAAGTCAACCATGGGCTTGAAGTCTTAGCTCAAAAATCTCTTATAACTATAGACCACAAACATGAACGCGTACATATGCATATATTACTGCAACAAATGGGTAGAGAAATTGTCAAGAAACAGTGTACGGAGAATCCTGGAAAGCGACAGTTCTTGTGGGACACCAAGGACATTTCTCATGTACTTGATGAAGATACTGCTACTGGAAATGTTCTTGGCATAAATACAACGTGGACGGGCGAGGAAATCCAAATAAATAAAAGCGCTTTCCAAGGGATGAATAATCTCCAGTTTCTATTACTCTTCTCTTACAGTACCATACACACACCCGAGGGCCTCGACTGTCTTCCCGACAAACTCATATTGCTACATTGGGACCGCTCTCCATTGAGAATTTGGCCTTCCACGTTCTCTGGCAAGTGTCTTGTCGAACTAAGGATGCAAAATAGCAAATTCGAGATGCTTTGGGAGGGAATAAAACCTCTCTCATGCCTGAGGACGTTAGATTTGAGTTCCTCTTGGGATCTGAAAAAGATTCCAGATCTCTCAAAAGCAACGAGTCTCGAGGTGTTACAGCTTGGTGATTGCAGAAGTTTGTTAGAGCTCACAAGCTCTATTAGCAGTGCCACTAAGCTTTGTTATTTGAATATATCAAGGTGTACAAAAATCAAAGACTTCCCAAATGTTCCTGACAGCATCGACGTGTTGGTGTTGTCCCATACAGGGATAAAGGATGTGCCTCCATGGATTGAGAACCTTTTTCGTCTGCGTAAACTAATTATGAATGGATGCAAGAAGCTGAAAACTATATCGCCAAACATTTCTAAGTTGGAGAATCTTGAGTTTCTTGCTCTGAATAACTATCTTTTCTGTGCTTATGCGTATGCTTATGAAGATGATCAAGAAGTAGATGACTGTGTATTTGAAGCAATAATCGAGTGGGGGGATGACTGTAAGCACAGTTGGATATTACGATCAGACTTCAAAGTTGACTACATTTTGCCGATATGTCTGCCCGAGAAGGCTTTTACATCTCCTATATCATTATGTCTCCGCAGTTATGGTATCAAAACTATTCCAGATTGCATCGGACGTCTCTCGGGACTAACTAAGCTTGACGTCAAAGAATGCAGAAGGCTGGTAGCACTTCCACCGCTTCCAGATTCCCTTCTGTATCTAGATGCACAAGGTTGTGAATCTTTGAAGAGAATAGACTCCTCATCTTTTCAAAATCCCGAGATTTGCATGAACTTTGCCTACTGCATCAACCTGAAACAAAAAGCGAGAAAGCTCATCCAGACATCAGCTTGCAAATATGCAGTCTTACCGGGTGAAGAAGTGCCTGCACACTTCACTCACCGAGCTAGTTCAAGTTCCTTAACGATCAATTCGACTCAAAGACCTCTTCCATCCAGGTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MASSSSSSSSLALIWLYHVFLSFRGEDVRKGFLSHVLKEFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDVAGIAGYHSSNCGNEADLINKVASDVMAVLGFTPSNDFDDFVGMGARVTEIKSKIILQSELVKVIGIFGPAGIGKTTTARVLYNQLSHAFPFSTFLEDIRGSYEKPCGNDYRLKLRLQKNLLCQIFNQSDIEVRHLRGAQEMLSDKKVLVVLDEVDNWWQLEEMAKQPGWVGPGSMIIITTEDRKLLKALGLGSDHIYKMNFPTEDESLQIFCQYAFGQKSPDDGFESLAREVTWLVGDLPLGLRVMGSYLRGMSKDEWIEALPWLRSTLDREIESTLRFSYDALRDNEKTLFLHVACLFGGFYASSIKSYFANSSLEVNHGLEVLAQKSLITIDHKHERVHMHILLQQMGREIVKKQCTENPGKRQFLWDTKDISHVLDEDTATGNVLGINTTWTGEEIQINKSAFQGMNNLQFLLLFSYSTIHTPEGLDCLPDKLILLHWDRSPLRIWPSTFSGKCLVELRMQNSKFEMLWEGIKPLSCLRTLDLSSSWDLKKIPDLSKATSLEVLQLGDCRSLLELTSSISSATKLCYLNISRCTKIKDFPNVPDSIDVLVLSHTGIKDVPPWIENLFRLRKLIMNGCKKLKTISPNISKLENLEFLALNNYLFCAYAYAYEDDQEVDDCVFEAIIEWGDDCKHSWILRSDFKVDYILPICLPEKAFTSPISLCLRSYGIKTIPDCIGRLSGLTKLDVKECRRLVALPPLPDSLLYLDAQGCESLKRIDSSSFQNPEICMNFAYCINLKQKARKLIQTSACKYAVLPGEEVPAHFTHRASSSSLTINSTQRPLPSR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
5-156 | TIR Toll-Interleukin receptor
|
SSSSSSLALIWLYHVFLSFRGEDVRKGFLSHVLKEFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDVAGIAGY |
| ProfileScan: PS50104 IPR000157
|
15-153 | TIR Toll-Interleukin receptor
|
WLYHVFLSFRGEDVRKGFLSHVLKEFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDVAGI |
| Gene3D: G3DSA:3.40.50.10140 | 15-150 | G3DSA:3.40.50.10140 | WLYHVFLSFRGEDVRKGFLSHVLKEFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDV |
| HMMSmart: SM00255 IPR000157
|
16-153 | TIR Toll-Interleukin receptor
|
LYHVFLSFRGEDVRKGFLSHVLKEFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDVAGI |
| HMMPfam: PF01582 IPR000157
|
19-148 | TIR Toll-Interleukin receptor
|
VFLSFRGEDVRKGFLSHVLKEFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALN |
| HMMPanther: PTHR11017 | 39-930 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | EFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDVAGIAGYHSSNCGNEADLINKVASDVMAVLGFTPSNDFDDFVGMGARVTEIKSKIILQSELVKVIGIFGPAGIGKTTTARVLYNQLSHAFPFSTFLEDIRGSYEKPCGNDYRLKLRLQKNLLCQIFNQSDIEVRHLRGAQEMLSDKKVLVVLDEVDNWWQLEEMAKQPGWVGPGSMIIITTEDRKLLKALGLGSDHIYKMNFPTEDESLQIFCQYAFGQKSPDDGFESLAREVTWLVGDLPLGLRVMGSYLRGMSKDEWIEALPWLRSTLDREIESTLRFSYDALRDNEKTLFLHVACLFGGFYASSIKSYFANSSLEVNHGLEVLAQKSLITIDHKHERVHMHILLQQMGREIVKKQCTENPGKRQFLWDTKDISHVLDEDTATGNVLGINTTWTGEEIQINKSAFQGMNNLQFLLLFSYSTIHTPEGLDCLPDKLILLHWDRSPLRIWPSTFSGKCLVELRMQNSKFEMLWEGIKPLSCLRTLDLSSSWDLKKIPDLSKATSLEVLQLGDCRSLLELTSSISSATKLCYLNISRCTKIKDFPNVPDSIDVLVLSHTGIKDVPPWIENLFRLRKLIMNGCKKLKTISPNISKLENLEFLALNNYLFCAYAYAYEDDQEVDDCVFEAIIEWGDDCKHSWILRSDFKVDYILPICLPEKAFTSPISLCLRSYGIKTIPDCIGRLSGLTKLDVKECRRLVALPPLPDSLLYLDAQGCESLKRIDSSSFQNPEICMNFAYCINLKQKARKLIQTSACKYAVLPGEEVPAHFTHRASSSSLTINS |
| HMMPanther: PTHR11017:SF20 | 39-930 | PTHR11017:SF20,SUBFAMILY NOT NAMED | EFKSKGINVFIDNEIKRGQSVGPELVKAIRHSRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDVAGIAGYHSSNCGNEADLINKVASDVMAVLGFTPSNDFDDFVGMGARVTEIKSKIILQSELVKVIGIFGPAGIGKTTTARVLYNQLSHAFPFSTFLEDIRGSYEKPCGNDYRLKLRLQKNLLCQIFNQSDIEVRHLRGAQEMLSDKKVLVVLDEVDNWWQLEEMAKQPGWVGPGSMIIITTEDRKLLKALGLGSDHIYKMNFPTEDESLQIFCQYAFGQKSPDDGFESLAREVTWLVGDLPLGLRVMGSYLRGMSKDEWIEALPWLRSTLDREIESTLRFSYDALRDNEKTLFLHVACLFGGFYASSIKSYFANSSLEVNHGLEVLAQKSLITIDHKHERVHMHILLQQMGREIVKKQCTENPGKRQFLWDTKDISHVLDEDTATGNVLGINTTWTGEEIQINKSAFQGMNNLQFLLLFSYSTIHTPEGLDCLPDKLILLHWDRSPLRIWPSTFSGKCLVELRMQNSKFEMLWEGIKPLSCLRTLDLSSSWDLKKIPDLSKATSLEVLQLGDCRSLLELTSSISSATKLCYLNISRCTKIKDFPNVPDSIDVLVLSHTGIKDVPPWIENLFRLRKLIMNGCKKLKTISPNISKLENLEFLALNNYLFCAYAYAYEDDQEVDDCVFEAIIEWGDDCKHSWILRSDFKVDYILPICLPEKAFTSPISLCLRSYGIKTIPDCIGRLSGLTKLDVKECRRLVALPPLPDSLLYLDAQGCESLKRIDSSSFQNPEICMNFAYCINLKQKARKLIQTSACKYAVLPGEEVPAHFTHRASSSSLTINS |
| superfamily: SSF52540 | 70-443 | SSF52540 | SRVAVVLLSRNYASSSWCLDELVEIMKCREEVGQTVLTIFYNVDPSEVRKQTGDFGKAFDETCVGKTEEVKKAWRQALNDVAGIAGYHSSNCGNEADLINKVASDVMAVLGFTPSNDFDDFVGMGARVTEIKSKIILQSELVKVIGIFGPAGIGKTTTARVLYNQLSHAFPFSTFLEDIRGSYEKPCGNDYRLKLRLQKNLLCQIFNQSDIEVRHLRGAQEMLSDKKVLVVLDEVDNWWQLEEMAKQPGWVGPGSMIIITTEDRKLLKALGLGSDHIYKMNFPTEDESLQIFCQYAFGQKSPDDGFESLAREVTWLVGDLPLGLRVMGSYLRGMSKDEWIEALPWLRSTLDREIESTLRFSYDALRDNEKTLFL |
| Gene3D: G3DSA:3.40.50.300 | 182-336 | G3DSA:3.40.50.300 | TPSNDFDDFVGMGARVTEIKSKIILQSELVKVIGIFGPAGIGKTTTARVLYNQLSHAFPFSTFLEDIRGSYEKPCGNDYRLKLRLQKNLLCQIFNQSDIEVRHLRGAQEMLSDKKVLVVLDEVDNWWQLEEMAKQPGWVGPGSMIIITTEDRKLL |
| HMMPfam: PF00931 IPR002182
|
196-449 | NB-ARC,NBS NB-ARC
|
RVTEIKSKIILQSELVKVIGIFGPAGIGKTTTARVLYNQLSHAFPFSTFLEDIRGSYEKPCGNDYRLKLRLQKNLLCQIFNQSDIEVRHLRGAQEMLSDKKVLVVLDEVDNWWQLEEMAKQPGWVGPGSMIIITTEDRKLLKALGLGSDHIYKMNFPTEDESLQIFCQYAFGQKSPDDGFESLAREVTWLVGDLPLGLRVMGSYLRGMSKDEWIEALPWLRSTLDREIESTLRFSYDALRDNEKTLFLHVACLF |
| FPrintScan: PR00364 IPR000767
|
213-228 | DISEASERSIST Disease resistance protein
|
VIGIFGPAGIGKTTTA |
| FPrintScan: PR00364 IPR000767
|
291-305 | DISEASERSIST Disease resistance protein
|
MLSDKKVLVVLDEVD |
| FPrintScan: PR00364 IPR000767
|
386-400 | DISEASERSIST Disease resistance protein
|
VGDLPLGLRVMGSYL |
| superfamily: SSF52058 | 491-892 | SSF52058,LRR | HMHILLQQMGREIVKKQCTENPGKRQFLWDTKDISHVLDEDTATGNVLGINTTWTGEEIQINKSAFQGMNNLQFLLLFSYSTIHTPEGLDCLPDKLILLHWDRSPLRIWPSTFSGKCLVELRMQNSKFEMLWEGIKPLSCLRTLDLSSSWDLKKIPDLSKATSLEVLQLGDCRSLLELTSSISSATKLCYLNISRCTKIKDFPNVPDSIDVLVLSHTGIKDVPPWIENLFRLRKLIMNGCKKLKTISPNISKLENLEFLALNNYLFCAYAYAYEDDQEVDDCVFEAIIEWGDDCKHSWILRSDFKVDYILPICLPEKAFTSPISLCLRSYGIKTIPDCIGRLSGLTKLDVKECRRLVALPPLPDSLLYLDAQGCESLKRIDSSSFQNPEICMNFAYCINLKQ |
| Gene3D: G3DSA:3.80.10.10 | 551-756 | G3DSA:3.80.10.10 | INKSAFQGMNNLQFLLLFSYSTIHTPEGLDCLPDKLILLHWDRSPLRIWPSTFSGKCLVELRMQNSKFEMLWEGIKPLSCLRTLDLSSSWDLKKIPDLSKATSLEVLQLGDCRSLLELTSSISSATKLCYLNISRCTKIKDFPNVPDSIDVLVLSHTGIKDVPPWIENLFRLRKLIMNGCKKLKTISPNISKLENLEFLALNNYLF |
| HMMPfam: PF07725 IPR011713
|
607-626 | LRR_3 Leucine-rich repeat 3
|
CLVELRMQNSKFEMLWEGIK |
| FPrintScan: PR00364 IPR000767
|
626-642 | DISEASERSIST Disease resistance protein
|
KPLSCLRTLDLSSSWDL |
| Gene3D: G3DSA:3.80.10.10 | 802-875 | G3DSA:3.80.10.10 | ICLPEKAFTSPISLCLRSYGIKTIPDCIGRLSGLTKLDVKECRRLVALPPLPDSLLYLDAQGCESLKRIDSSSF |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
