PRGDB00061521 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438218 (FJ842818) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGCTCTGACTTTCCTCTGGGGCGTTTTCTCCTTCATCGTCTTCTGCTTAGGACTACTACGACTCCTTCACTCTGACAGGAGAAAAAAACCAACGCATCTTCTGCATCATGTAACTTCCACAACTGCTGATGGTTCTCCATCTTTGCAGTCACCCTCGTCCCGGCCTTTGTGGAAGTACGATGTGTTCCTCAGTTTCAGGGGAACAGATGTACGGAAAGGATTTCTCAGCCATCTCTACAAAGCTCTCACCGACAACGGCATCCACACGTTCCGCGACGACGCAGAGCTCCAGCGAGGGAACTTCATCAGCCCTGCTCTCCTCGGAGCCATCGAGCAGTCAAGATTCGCTGTCGTTGTCTTATCCGAGAACTACGCCACCTCTCGCTGGTGTTTACAAGAGCTCGTGCATATCACCAAGTGCGTCGAGAAGAAGCAGATGGAGTTGATCCCTGTCTTCTTCGGGGTTGATCCTTCACATGTCAAGAGACAGTCTGGAAACTTCGCCAAGGCCTTCGCTGAACACGACAAGAGGCCTAATAAAGATGCTGTGGAGTCATGGAGAAAAGCTATGGCCACAGTGGGATTCATCTCCGGCTGGGATTCAAGAAACTGGAACGAGGAGTCAAAGCTTATAGAGGAGCTTGTTCAAGATCTCTCAGACAGAATATTCTCGGCAGTGTCTACGAGTGATACTGGTGAATGGATCGGGATGAGTACACACATGAGAAGTATATATCCTTTAATGAGCAAAGACCCCAACGATGTCCGAATGGTTGGGATCTGGGGCATGGGAGGTATTGGCAAAACCACCATTGCTAAATACATCTACAAAGGATTCTTGAGCGAGTTCTATGGTGCTTGCTTGCTAGAGAATGTAAAAAAAGAGTTTAAACGACATGGACCGTCACATTTACGTGAGAAGATCTTGTCTGAAATCTTTCGCAAGAAAGACATGAACACATGGAACAAGGATTCCGATGTAATGAAGCAAAGACTACAAGGGAAGAAGGTTCTTCTCGTCCTGGACGATGTTGATGACATACAACAGCTAGAAGAGTTAGCTGGAAGCTCTGATTGGTTTGGACCAGGAAGCAGAATCGTTATAACCACTAGAGACAGGCGTGTTCTTGACCAGCATGATGTGGAACGCATCTACGAAGTTAAGCCTCTGAGGACTACACAAGCACTTCAGCTCTTTAGCAAACACGCTTTCAAGCAGCCTCGTCCATCTGAAGACTACAGAGAGCTCTCCCTCGACGTTGTGGAGCAGCTTGGTGGTCTTCCACTAGCTATTCAAGTCGTTGGGGGATCTCTATACCGTCGAGAGCTGAAGTTTTGGGAAGACAAACTGGATTTACTTAGAAACAACGGCGATAACTCTGCTTTCAAGGCGTTGAAAGTAAGTTATGAAGCGTTGGATGAGATTGAAAAGAAGATTTTTCTTTACGTTGCGCTTTGTTTCAACGGAGTGTATATGGACCGTGTTAGAAAAGTACTAGACCTTTGTTTCGTGTCTTCCAGGAGACGAGTGTTACCGACCAGACCGAGCATTGTAGCTCTGATGGAGAAGTGTATGATTAGCTTGTCAAAAAATAAACTTTTGTGGGTTCATGACTTGCTCCAAGACATGGCTGAGGAAATTATATGTGAAGGCAAAGATGAGAGGCCATGGAAACGTTTAATGCTGTGGGATTTTGAAGATATCAATCACGTTTTTTCCACCAATATGGGAGATGAAGCAATTGATGTTGAAAGCATATTCTTAGACATGTCTGAAGGAAATGAGCTTAGTATTACCCCTGGGATCTTCAAGAAGATGCCAAATCTCAAGCTGCTTGAATTCTACACTAACTCCAGCGTTGAAGAGAGCAGAACAAGGATGTTAGATGGTCTTGAATACCTTCCTACGCTTCGGTATCTTCACTGGGATGCTTATCATCTAAAGTCTTTACCACCTCAGTTCTGTACTAGTTTTCTAGTTGAACTCAACCTCTCTCACAGCTCAATACAAACAGTTTGGAGTGGAAGTCAGCAAGATCTTGGGAACTTACGGAGCCTAAACCTCATAAGCTGCAAGCACCTAAACGAGTTTCCAGACCTTTCAAAGGCAACTAATCTCGAGTCTCTCAAGCTCTCAAACTGTGACAACTTGGTGGAGATCCCTGACTCATCTCTTAGACAACTCAACAAACTCGTCCACTTCAAGTTGAGCAACTGCAAGAATCTAAAAAGCCTCCCAAACAACATCAACTTAAAATCCCTCAGGTCTCTACATCTAAACGGGTGCTCTAGCCTAGAAGAGTTCCCATTCATCTCAGAAACCGTCGAGAAGCTGCTTCTCAACGAGACATCTATCCAACAAGTACCACCATCAATCGAACGTCTCACTCGTCTCAGAGATATACATCTCTCTGGCTGCAAGAGACTGATGAATCTCCCAGAGTGTATCAAGAACCTAAAGTTCCTCAACGATCTTGGCCTCGCAAACTGTCCTAACGTCATATCGTTCCCAGAACTCGGAAGGAGTATAAGATGGTTGAATCTGAACAAGACGGGTATACAAGAAGTGCCTCTGACGATAGGGGACAAGTCAGAGCTCCGTTACTTGAACATGTCTGGATGTGACAAGCTCATGACCCTTCCTCCAACGGTGAAGAAACTGGGACAGCTTAAGTACTTGAATCTTCGCGGTTGCGTTAATGTCACCGAGTCTCCTAACCTCGCTGGAGGCAAAACAATGAAGGCTTTGGACTTGCATGGAACATCGATAACAGAGAAACTGGTTGGCTCCAACAGTGAAGAGCCTCCTCAGTGTGAAGTACCCGTGATAAGACGGTTCTTTATGAGGAACGTTCGAGAACACATCAAGAAACGCAAATCCAACAGATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MALTFLWGVFSFIVFCLGLLRLLHSDRRKKPTHLLHHVTSTTADGSPSLQSPSSRPLWKYDVFLSFRGTDVRKGFLSHLYKALTDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAMATVGFISGWDSRNWNEESKLIEELVQDLSDRIFSAVSTSDTGEWIGMSTHMRSIYPLMSKDPNDVRMVGIWGMGGIGKTTIAKYIYKGFLSEFYGACLLENVKKEFKRHGPSHLREKILSEIFRKKDMNTWNKDSDVMKQRLQGKKVLLVLDDVDDIQQLEELAGSSDWFGPGSRIVITTRDRRVLDQHDVERIYEVKPLRTTQALQLFSKHAFKQPRPSEDYRELSLDVVEQLGGLPLAIQVVGGSLYRRELKFWEDKLDLLRNNGDNSAFKALKVSYEALDEIEKKIFLYVALCFNGVYMDRVRKVLDLCFVSSRRRVLPTRPSIVALMEKCMISLSKNKLLWVHDLLQDMAEEIICEGKDERPWKRLMLWDFEDINHVFSTNMGDEAIDVESIFLDMSEGNELSITPGIFKKMPNLKLLEFYTNSSVEESRTRMLDGLEYLPTLRYLHWDAYHLKSLPPQFCTSFLVELNLSHSSIQTVWSGSQQDLGNLRSLNLISCKHLNEFPDLSKATNLESLKLSNCDNLVEIPDSSLRQLNKLVHFKLSNCKNLKSLPNNINLKSLRSLHLNGCSSLEEFPFISETVEKLLLNETSIQQVPPSIERLTRLRDIHLSGCKRLMNLPECIKNLKFLNDLGLANCPNVISFPELGRSIRWLNLNKTGIQEVPLTIGDKSELRYLNMSGCDKLMTLPPTVKKLGQLKYLNLRGCVNVTESPNLAGGKTMKALDLHGTSITEKLVGSNSEEPPQCEVPVIRRFFMRNVREHIKKRKSNR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
48-200 | TIR Toll-Interleukin receptor
|
SLQSPSSRPLWKYDVFLSFRGTDVRKGFLSHLYKALTDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAMATVGFISGW |
| ProfileScan: PS50104 IPR000157
|
58-197 | TIR Toll-Interleukin receptor
|
WKYDVFLSFRGTDVRKGFLSHLYKALTDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAMATVGFI |
| Gene3D: G3DSA:3.40.50.10140 | 58-193 | G3DSA:3.40.50.10140 | WKYDVFLSFRGTDVRKGFLSHLYKALTDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAMAT |
| HMMSmart: SM00255 IPR000157
|
59-197 | TIR Toll-Interleukin receptor
|
KYDVFLSFRGTDVRKGFLSHLYKALTDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAMATVGFI |
| HMMPfam: PF01582 IPR000157
|
62-191 | TIR Toll-Interleukin receptor
|
VFLSFRGTDVRKGFLSHLYKALTDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAM |
| HMMPanther: PTHR11017 | 84-899 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | TDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAMATVGFISGWDSRNWNEESKLIEELVQDLSDRIFSAVSTSDTGEWIGMSTHMRSIYPLMSKDPNDVRMVGIWGMGGIGKTTIAKYIYKGFLSEFYGACLLENVKKEFKRHGPSHLREKILSEIFRKKDMNTWNKDSDVMKQRLQGKKVLLVLDDVDDIQQLEELAGSSDWFGPGSRIVITTRDRRVLDQHDVERIYEVKPLRTTQALQLFSKHAFKQPRPSEDYRELSLDVVEQLGGLPLAIQVVGGSLYRRELKFWEDKLDLLRNNGDNSAFKALKVSYEALDEIEKKIFLYVALCFNGVYMDRVRKVLDLCFVSSRRRVLPTRPSIVALMEKCMISLSKNKLLWVHDLLQDMAEEIICEGKDERPWKRLMLWDFEDINHVFSTNMGDEAIDVESIFLDMSEGNELSITPGIFKKMPNLKLLEFYTNSSVEESRTRMLDGLEYLPTLRYLHWDAYHLKSLPPQFCTSFLVELNLSHSSIQTVWSGSQQDLGNLRSLNLISCKHLNEFPDLSKATNLESLKLSNCDNLVEIPDSSLRQLNKLVHFKLSNCKNLKSLPNNINLKSLRSLHLNGCSSLEEFPFISETVEKLLLNETSIQQVPPSIERLTRLRDIHLSGCKRLMNLPECIKNLKFLNDLGLANCPNVISFPELGRSIRWLNLNKTGIQEVPLTIGDKSELRYLNMSGCDKLMTLPPTVKKLGQLKYLNLRGC |
| HMMPanther: PTHR11017:SF20 | 84-899 | PTHR11017:SF20,SUBFAMILY NOT NAMED | TDNGIHTFRDDAELQRGNFISPALLGAIEQSRFAVVVLSENYATSRWCLQELVHITKCVEKKQMELIPVFFGVDPSHVKRQSGNFAKAFAEHDKRPNKDAVESWRKAMATVGFISGWDSRNWNEESKLIEELVQDLSDRIFSAVSTSDTGEWIGMSTHMRSIYPLMSKDPNDVRMVGIWGMGGIGKTTIAKYIYKGFLSEFYGACLLENVKKEFKRHGPSHLREKILSEIFRKKDMNTWNKDSDVMKQRLQGKKVLLVLDDVDDIQQLEELAGSSDWFGPGSRIVITTRDRRVLDQHDVERIYEVKPLRTTQALQLFSKHAFKQPRPSEDYRELSLDVVEQLGGLPLAIQVVGGSLYRRELKFWEDKLDLLRNNGDNSAFKALKVSYEALDEIEKKIFLYVALCFNGVYMDRVRKVLDLCFVSSRRRVLPTRPSIVALMEKCMISLSKNKLLWVHDLLQDMAEEIICEGKDERPWKRLMLWDFEDINHVFSTNMGDEAIDVESIFLDMSEGNELSITPGIFKKMPNLKLLEFYTNSSVEESRTRMLDGLEYLPTLRYLHWDAYHLKSLPPQFCTSFLVELNLSHSSIQTVWSGSQQDLGNLRSLNLISCKHLNEFPDLSKATNLESLKLSNCDNLVEIPDSSLRQLNKLVHFKLSNCKNLKSLPNNINLKSLRSLHLNGCSSLEEFPFISETVEKLLLNETSIQQVPPSIERLTRLRDIHLSGCKRLMNLPECIKNLKFLNDLGLANCPNVISFPELGRSIRWLNLNKTGIQEVPLTIGDKSELRYLNMSGCDKLMTLPPTVKKLGQLKYLNLRGC |
| superfamily: SSF52540 | 235-480 | SSF52540 | WIGMSTHMRSIYPLMSKDPNDVRMVGIWGMGGIGKTTIAKYIYKGFLSEFYGACLLENVKKEFKRHGPSHLREKILSEIFRKKDMNTWNKDSDVMKQRLQGKKVLLVLDDVDDIQQLEELAGSSDWFGPGSRIVITTRDRRVLDQHDVERIYEVKPLRTTQALQLFSKHAFKQPRPSEDYRELSLDVVEQLGGLPLAIQVVGGSLYRRELKFWEDKLDLLRNNGDNSAFKALKVSYEALDEIEKKI |
| HMMPfam: PF00931 IPR002182
|
241-494 | NB-ARC,NBS NB-ARC
|
HMRSIYPLMSKDPNDVRMVGIWGMGGIGKTTIAKYIYKGFLSEFYGACLLENVKKEFKRHGPSHLREKILSEIFRKKDMNTWNKDSDVMKQRLQGKKVLLVLDDVDDIQQLEELAGSSDWFGPGSRIVITTRDRRVLDQHDVERIYEVKPLRTTQALQLFSKHAFKQPRPSEDYRELSLDVVEQLGGLPLAIQVVGGSLYRRELKFWEDKLDLLRNNGDNSAFKALKVSYEALDEIEKKIFLYVALCFNGVYMD |
| Gene3D: G3DSA:3.40.50.300 | 257-380 | G3DSA:3.40.50.300 | RMVGIWGMGGIGKTTIAKYIYKGFLSEFYGACLLENVKKEFKRHGPSHLREKILSEIFRKKDMNTWNKDSDVMKQRLQGKKVLLVLDDVDDIQQLEELAGSSDWFGPGSRIVITTRDRRVLDQH |
| FPrintScan: PR00364 IPR000767
|
258-273 | DISEASERSIST Disease resistance protein
|
MVGIWGMGGIGKTTIA |
| FPrintScan: PR00364 IPR000767
|
332-346 | DISEASERSIST Disease resistance protein
|
RLQGKKVLLVLDDVD |
| FPrintScan: PR00364 IPR000767
|
425-439 | DISEASERSIST Disease resistance protein
|
LGGLPLAIQVVGGSL |
| superfamily: SSF52058 | 520-926 | SSF52058,LRR | ALMEKCMISLSKNKLLWVHDLLQDMAEEIICEGKDERPWKRLMLWDFEDINHVFSTNMGDEAIDVESIFLDMSEGNELSITPGIFKKMPNLKLLEFYTNSSVEESRTRMLDGLEYLPTLRYLHWDAYHLKSLPPQFCTSFLVELNLSHSSIQTVWSGSQQDLGNLRSLNLISCKHLNEFPDLSKATNLESLKLSNCDNLVEIPDSSLRQLNKLVHFKLSNCKNLKSLPNNINLKSLRSLHLNGCSSLEEFPFISETVEKLLLNETSIQQVPPSIERLTRLRDIHLSGCKRLMNLPECIKNLKFLNDLGLANCPNVISFPELGRSIRWLNLNKTGIQEVPLTIGDKSELRYLNMSGCDKLMTLPPTVKKLGQLKYLNLRGCVNVTESPNLAGGKTMKALDLHGTSITE |
| Gene3D: G3DSA:3.80.10.10 | 589-820 | G3DSA:3.80.10.10 | LDMSEGNELSITPGIFKKMPNLKLLEFYTNSSVEESRTRMLDGLEYLPTLRYLHWDAYHLKSLPPQFCTSFLVELNLSHSSIQTVWSGSQQDLGNLRSLNLISCKHLNEFPDLSKATNLESLKLSNCDNLVEIPDSSLRQLNKLVHFKLSNCKNLKSLPNNINLKSLRSLHLNGCSSLEEFPFISETVEKLLLNETSIQQVPPSIERLTRLRDIHLSGCKRLMNLPECIKNL |
| HMMPfam: PF00560 IPR001611
|
706-729 | LRR_1 Leucine-rich repeat
|
NLESLKLSNCDNLVEIPDSSLRQL |
| FPrintScan: PR00364 IPR000767
|
750-766 | DISEASERSIST Disease resistance protein
|
INLKSLRSLHLNGCSSL |
| Gene3D: G3DSA:3.80.10.10 | 821-926 | G3DSA:3.80.10.10 | KFLNDLGLANCPNVISFPELGRSIRWLNLNKTGIQEVPLTIGDKSELRYLNMSGCDKLMTLPPTVKKLGQLKYLNLRGCVNVTESPNLAGGKTMKALDLHGTSITE |
| HMMPfam: PF00560 IPR001611
|
867-887 | LRR_1 Leucine-rich repeat
|
LRYLNMSGCDKLMTLPPTVKK |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
